mRNA_P-wetherbeei_contig2131.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2131.6.1
Unique NamemRNA_P-wetherbeei_contig2131.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2131.6.1 vs. uniprot
Match: A0A8K1C3B2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3B2_PYTOL)

HSP 1 Score: 52.8 bits (125), Expect = 2.960e-7
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 DGTYSAVADNSKFLDVVDQAWADDSLSDDELDLPDGVEVPNDVAEV--LGIALDATDQEEDRWQDLGLD 201
            D    +V     FLD+VD+ W  D+LSDDE+++P G EV  + AE+  +G A D  D    RW DLGLD
Sbjct:   14 DSKLPSVFPKRHFLDIVDEKWITDTLSDDEIEVPPGAEVDPNNAELEPVGWAEDKVD----RWNDLGLD 78          
BLAST of mRNA_P-wetherbeei_contig2131.6.1 vs. uniprot
Match: A0A4D9D019_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D019_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.720e-6
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    1 DGTYSAVADNSKFLDVVDQAWADDSLSDDELDLP-------------DGVEVPNDVAEVLG-IALDATDQEEDRWQDLGLDNVL 210
            D +++AV+    FLDV+D+ W  DSLSDDELD+P             D +   +  A   G +       +E+RW+DLGLD +L
Sbjct:    3 DSSFAAVSRYRGFLDVIDEEWTADSLSDDELDVPALSEFFLEDDEDEDTINGGDSAAGRKGFVGTGRRPNQEERWEDLGLDRLL 86          
BLAST of mRNA_P-wetherbeei_contig2131.6.1 vs. uniprot
Match: A0A3F2S300_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S300_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 5.390e-6
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   37 FLDVVDQAWADDSLSDDELDLPDGVEV-------PNDVAEVLGIALDATDQEEDRWQDLGLDNVLQ 213
            +LD+VD  W  DSLSDDE+++P G+EV       P D   V      A D++ +RW DLGLD  ++
Sbjct:   14 YLDIVDDDWIADSLSDDEIEVPPGLEVDPNGNESPTDEPPVW-----AADEKVERWNDLGLDQWVK 74          
BLAST of mRNA_P-wetherbeei_contig2131.6.1 vs. uniprot
Match: A0A6A3P2C0_9STRA (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P2C0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 7.640e-6
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   37 FLDVVDQAWADDSLSDDELDLPDGVEV-PNDVAEVLGIA-LDATDQEEDRWQDLGLDNVLQ 213
            +LD+VD AW  D+LSDDE+D+P  ++V PN      G   + A + + DRW DLGLD  ++
Sbjct:   14 YLDIVDDAWITDTLSDDEIDVPPALDVDPNGSESPTGEPPMWAAEGKVDRWNDLGLDQRVK 74          
BLAST of mRNA_P-wetherbeei_contig2131.6.1 vs. uniprot
Match: A0A2D4CG88_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CG88_PYTIN)

HSP 1 Score: 47.8 bits (112), Expect = 3.140e-5
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 1
Query:    1 DGTYSAVADNSKFLDVVDQAWADDSLSDDELDLPDGVEV-PNDVAEVLGIA----------LDATDQEEDRWQDLGLDNVLQ 213
            D   S+V     +LD+VD AW  DSLSDDE+D+  GV++ PN      G            +  +D   DRW DLGL++ L+
Sbjct:    7 DSKLSSVFPRRHYLDLVDDAWIGDSLSDDEMDVVAGVDLDPNSTEHSRGSLTWKQNAEMEPVGWSDDTIDRWNDLGLEHWLR 88          
BLAST of mRNA_P-wetherbeei_contig2131.6.1 vs. uniprot
Match: A0A1W0A702_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A702_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.480e-5
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   40 LDVVDQAWADDSLSDDELDLPDGVEVPN-DVAEVLGIALDA---TDQEEDRWQDLGL 198
            LDVVDQAW  D LSDDE++LP G+E+ N D    L + +     TDQ E RW DLGL
Sbjct:   67 LDVVDQAWMQDYLSDDEIELPMGLEMNNEDGTPPLALPVFPGLRTDQPE-RWNDLGL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2131.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A8K1C3B2_PYTOL2.960e-744.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D019_9STRA1.720e-636.90Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A3F2S300_9STRA5.390e-642.42Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A6A3P2C0_9STRA7.640e-644.26Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A2D4CG88_PYTIN3.140e-537.80Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1W0A702_9STRA8.480e-554.39Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2131contigP-wetherbeei_contig2131:5809..6045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo142721
Model size237
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.42e-06
EggNOG OGs2ET2P@1|root,2SVH4@2759|Eukaryota,3QFF8@4776|Peronosporales
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186221.5821562-CDS-P-wetherbeei_contig2131:5808..60451683186221.5821562-CDS-P-wetherbeei_contig2131:5808..6045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2131 5809..6045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2131.6.1prot_P-wetherbeei_contig2131.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2131 5809..6045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2131.6.1

>prot_P-wetherbeei_contig2131.6.1 ID=prot_P-wetherbeei_contig2131.6.1|Name=mRNA_P-wetherbeei_contig2131.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
DGTYSAVADNSKFLDVVDQAWADDSLSDDELDLPDGVEVPNDVAEVLGIA
LDATDQEEDRWQDLGLDNVLQREGGFPH*
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mRNA from alignment at P-wetherbeei_contig2131:5809..6045-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2131.6.1 ID=mRNA_P-wetherbeei_contig2131.6.1|Name=mRNA_P-wetherbeei_contig2131.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig2131:5809..6045- (Phaeothamnion wetherbeei SAG_119_79)
GACGGCACCTACAGTGCGGTGGCGGACAACTCCAAGTTCTTGGACGTCGT GGACCAGGCGTGGGCGGACGACTCCCTCTCAGACGATGAGCTGGACCTGC CGGACGGGGTCGAGGTGCCCAACGACGTCGCCGAGGTGCTCGGCATCGCC CTCGACGCCACGGACCAGGAGGAGGACCGGTGGCAGGACCTGGGACTCGA TAACGTGCTGCAAAGAGAAGGCGGCTTCCCGCATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2131:5809..6045-

>mRNA_P-wetherbeei_contig2131.6.1 ID=mRNA_P-wetherbeei_contig2131.6.1|Name=mRNA_P-wetherbeei_contig2131.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig2131:5809..6045- (Phaeothamnion wetherbeei SAG_119_79)
GACGGCACCTACAGTGCGGTGGCGGACAACTCCAAGTTCTTGGACGTCGT
GGACCAGGCGTGGGCGGACGACTCCCTCTCAGACGATGAGCTGGACCTGC
CGGACGGGGTCGAGGTGCCCAACGACGTCGCCGAGGTGCTCGGCATCGCC
CTCGACGCCACGGACCAGGAGGAGGACCGGTGGCAGGACCTGGGACTCGA
TAACGTGCTGCAAAGAGAAGGCGGCTTCCCGCATTAG
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