mRNA_P-wetherbeei_contig21295.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21295.1.1
Unique NamemRNA_P-wetherbeei_contig21295.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: A0A7S2WL38_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL38_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.130e-15
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRL 126
            WLP H IDLAPEGFI PHVDSVKFSG VVAGLSL+S AVM+L
Sbjct:   56 WLPVHVIDLAPEGFISPHVDSVKFSGGVVAGLSLLSPAVMKL 97          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: A0A835Z757_9STRA (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z757_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.430e-14
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            WLP HAIDL+ +G IKPHVDSVKFSG+VVAGLSL+S A+M LR
Sbjct:   91 WLPVHAIDLSAQGHIKPHVDSVKFSGKVVAGLSLLSTALMTLR 133          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: A0A7S0CLP9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLP9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.990e-13
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            WLPCHAIDL  +G +  HVDSVKFSG +V+GLSLVS+++MRLR
Sbjct:   76 WLPCHAIDLGNDGTLSAHVDSVKFSGDIVSGLSLVSSSIMRLR 118          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: B8BQR0_THAPS (2OG-FeII_Oxy_2 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQR0_THAPS)

HSP 1 Score: 66.2 bits (160), Expect = 2.510e-12
Identity = 27/43 (62.79%), Postives = 38/43 (88.37%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            W+PCHAIDL+ +G +  HVDSVKFSG++VAG+SL+S ++MRL+
Sbjct:   64 WIPCHAIDLSEKGRLDAHVDSVKFSGKIVAGISLLSDSIMRLK 106          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: A0A7S2LHY8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHY8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.680e-12
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            WLPCHAIDL+ +G +  HVDSVKFSG +VAG+SL+S ++MRLR
Sbjct:  131 WLPCHAIDLSKKGRLDAHVDSVKFSGEIVAGISLLSDSIMRLR 173          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: A0A7S1YZD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZD1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.150e-12
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            WLP HAIDLA  G +  HVDSVKFSG +VAGLSL+S+++MRLR
Sbjct:   48 WLPSHAIDLAKHGELTAHVDSVKFSGGIVAGLSLLSSSIMRLR 90          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: B7GDM4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDM4_PHATC)

HSP 1 Score: 67.0 bits (162), Expect = 3.580e-12
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            WLPCH IDL  EG +  HVDSV+FSG +VAGLSL+S+++MRLR
Sbjct:  137 WLPCHCIDLKKEGELNAHVDSVRFSGDIVAGLSLMSSSIMRLR 179          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: A0A7S2S819_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S819_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.720e-12
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            WLPCHAIDL   G I  HVDSVKFSG +VAGLSL+S ++MRL+
Sbjct:  134 WLPCHAIDLQKRGEITAHVDSVKFSGYIVAGLSLLSPSIMRLK 176          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: K0SDK4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SDK4_THAOC)

HSP 1 Score: 67.0 bits (162), Expect = 7.830e-12
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR 129
            WLPCHAIDLA +G +  HVDSVKFSG VV G+SL+S ++MRLR
Sbjct: 1144 WLPCHAIDLAQDGDLDAHVDSVKFSGGVVCGISLLSDSIMRLR 1186          
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Match: A0A448ZJT6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJT6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.180e-12
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRL 126
            WLPCHAIDL  EG ++ HVDSV+FSG +VAGLSL S AVMRL
Sbjct:  188 WLPCHAIDLKREGELRAHVDSVRFSGHLVAGLSLRSTAVMRL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WL38_9STRA2.130e-1583.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z757_9STRA4.430e-1476.742OG-FeII_Oxy_2 domain-containing protein n=1 Tax=T... [more]
A0A7S0CLP9_9STRA2.990e-1369.77Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B8BQR0_THAPS2.510e-1262.792OG-FeII_Oxy_2 domain-containing protein (Fragment... [more]
A0A7S2LHY8_9STRA2.680e-1267.44Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1YZD1_9STRA3.150e-1269.77Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B7GDM4_PHATC3.580e-1267.44Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2S819_9STRA4.720e-1269.77Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
K0SDK4_THAOC7.830e-1269.77Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A448ZJT6_9STRA8.180e-1273.81Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21295contigP-wetherbeei_contig21295:676..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0SDK4
Model size129
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.28e-12
EggNOG OGsCOG3145@1|root,KOG4176@2759|Eukaryota,2XCWE@2836|Bacillariophyta
Descriptiondioxygenase activity
Cds size129
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.9691658-CDS-P-wetherbeei_contig21295:675..8041683186220.9691658-CDS-P-wetherbeei_contig21295:675..804Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21295 676..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21295.1.1prot_P-wetherbeei_contig21295.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21295 676..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21295.1.1

>prot_P-wetherbeei_contig21295.1.1 ID=prot_P-wetherbeei_contig21295.1.1|Name=mRNA_P-wetherbeei_contig21295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
WLPCHAIDLAPEGFIKPHVDSVKFSGRVVAGLSLVSAAVMRLR
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mRNA from alignment at P-wetherbeei_contig21295:676..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21295.1.1 ID=mRNA_P-wetherbeei_contig21295.1.1|Name=mRNA_P-wetherbeei_contig21295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig21295:676..804- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTGCCTTGCCACGCCATCGACCTGGCGCCGGAGGGCTTCATCAAGCC GCACGTCGACAGCGTAAAGTTCTCCGGCCGCGTCGTCGCCGGCCTCTCCC TCGTCTCGGCGGCCGTCATGCGCCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21295:676..804-

>mRNA_P-wetherbeei_contig21295.1.1 ID=mRNA_P-wetherbeei_contig21295.1.1|Name=mRNA_P-wetherbeei_contig21295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig21295:676..804- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTGCCTTGCCACGCCATCGACCTGGCGCCGGAGGGCTTCATCAAGCC
GCACGTCGACAGCGTAAAGTTCTCCGGCCGCGTCGTCGCCGGCCTCTCCC
TCGTCTCGGCGGCCGTCATGCGCCTGCGC
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