mRNA_P-wetherbeei_contig21290.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21290.1.1
Unique NamemRNA_P-wetherbeei_contig21290.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: UPI001B13561D (Flp family type IVb pilin n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=UPI001B13561D)

HSP 1 Score: 52.8 bits (125), Expect = 4.960e-8
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKV 144
            M FI +L  DE G TAIEYG+IAAL+A+ ++ + ++L +NLSG   KV
Sbjct:    1 MKFINKLLRDEAGATAIEYGLIAALIAVAAITAMQSLGNNLSGTFNKV 48
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: A0A6G6X6F9_9SPHN (Flp family type IVb pilin n=1 Tax=Altererythrobacter sp. BO-6 TaxID=2604537 RepID=A0A6G6X6F9_9SPHN)

HSP 1 Score: 52.4 bits (124), Expect = 9.760e-8
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKV 144
            M FI +L  DE G TAIEYG+IAAL+A+ ++ + ++L  NLSG  T+V
Sbjct:    1 MKFINKLLRDEQGATAIEYGLIAALIAVAAIGALQSLGGNLSGTFTRV 48
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: A0A5C8NXN9_9BURK (Flp family type IVb pilin n=1 Tax=Zeimonas arvi TaxID=2498847 RepID=A0A5C8NXN9_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 1.020e-7
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 FIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKVAFA 153
            FI+  W +E GVTAIEYG+IAAL+A+V + +  A+ +NL+ V  K+A A
Sbjct:    4 FIKNFWLEEEGVTAIEYGLIAALIAVVIITAVTAVGTNLNAVFNKIATA 52
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: A0A1Y0G5J7_9PROT (Flp family type IVb pilin n=1 Tax=Sulfuriferula sp. AH1 TaxID=1985873 RepID=A0A1Y0G5J7_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.460e-7
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 IQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKVA 147
            +QR W DE GVTAIEYG+IAAL+A+V + +  A+ +NLS V   VA
Sbjct:    8 MQRFWKDEEGVTAIEYGLIAALIAVVIIAAVTAVGTNLSNVFNFVA 53
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: A0A1I1CCX2_9BURK (Pilus assembly protein Flp/PilA n=2 Tax=unclassified Janthinobacterium TaxID=2610881 RepID=A0A1I1CCX2_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 2.750e-7
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKVA 147
            M FI+   A+E GVTAIEYG+IAAL+A V V S  ++ +N++ V TK+A
Sbjct:    1 MNFIKNFIAEEDGVTAIEYGLIAALIAAVIVVSVTSIGTNIASVFTKIA 49
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: UPI001665623D (Flp family type IVb pilin n=1 Tax=Tsuneonella deserti TaxID=2035528 RepID=UPI001665623D)

HSP 1 Score: 50.8 bits (120), Expect = 2.810e-7
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKV 144
            M FI+ L  DE G TAIEYG+IAAL+A+ ++ +  +L ++LSG  TKV
Sbjct:    1 MQFIKNLVRDEAGATAIEYGLIAALIAVAAITAMTSLGTSLSGTFTKV 48
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: A0A850H8T3_9SPHN (Flp family type IVb pilin n=1 Tax=Altererythrobacter lutimaris TaxID=2743979 RepID=A0A850H8T3_9SPHN)

HSP 1 Score: 50.4 bits (119), Expect = 4.370e-7
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKVA 147
            MTFI++L+ADE G TAIEYG+IAAL+A+ ++ +  +L   LS   + VA
Sbjct:    1 MTFIKKLYADEQGATAIEYGLIAALIAVAAITAMGSLGDELSTTFSTVA 49
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BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: UPI00053C024D (Flp family type IVb pilin n=1 Tax=Sphingomonas sp. 35-24ZXX TaxID=1545915 RepID=UPI00053C024D)

HSP 1 Score: 50.1 bits (118), Expect = 5.670e-7
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKV 144
            M  I+ L+AD+ G TAIEYG+IAAL+A+ ++ +  +L S+LSG  TKV
Sbjct:    1 MKTIRNLFADKKGATAIEYGLIAALIAVAAITAMGSLGSSLSGTFTKV 48
[Close]
BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: A0A3M9YR96_9SPHN (Flp family type IVb pilin n=2 Tax=Porphyrobacter sp. IPPAS B-1204 TaxID=2483793 RepID=A0A3M9YR96_9SPHN)

HSP 1 Score: 50.1 bits (118), Expect = 5.930e-7
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKV 144
            MTF ++L  DE G TAIEYG+IAAL+A+ ++ S  AL + LSG    V
Sbjct:    1 MTFFKKLVLDEQGATAIEYGLIAALIAVAAITSMTALGTTLSGTFNNV 48
[Close]
BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Match: UPI00070EA6EC (Flp family type IVb pilin n=1 Tax=Tsuneonella troitsensis TaxID=292222 RepID=UPI00070EA6EC)

HSP 1 Score: 50.1 bits (118), Expect = 6.200e-7
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKV 144
            M FI+ L  DE G TAIEYG+IAAL+A+ ++ +  +L +NLSG  T +
Sbjct:    1 MQFIKNLVRDEAGATAIEYGLIAALIAVAAITAMTSLGNNLSGTFTTI 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001B13561D4.960e-852.08Flp family type IVb pilin n=1 Tax=Novosphingobium ... [more]
A0A6G6X6F9_9SPHN9.760e-852.08Flp family type IVb pilin n=1 Tax=Altererythrobact... [more]
A0A5C8NXN9_9BURK1.020e-751.02Flp family type IVb pilin n=1 Tax=Zeimonas arvi Ta... [more]
A0A1Y0G5J7_9PROT1.460e-756.52Flp family type IVb pilin n=1 Tax=Sulfuriferula sp... [more]
A0A1I1CCX2_9BURK2.750e-753.06Pilus assembly protein Flp/PilA n=2 Tax=unclassifi... [more]
UPI001665623D2.810e-752.08Flp family type IVb pilin n=1 Tax=Tsuneonella dese... [more]
A0A850H8T3_9SPHN4.370e-751.02Flp family type IVb pilin n=1 Tax=Altererythrobact... [more]
UPI00053C024D5.670e-752.08Flp family type IVb pilin n=1 Tax=Sphingomonas sp.... [more]
A0A3M9YR96_9SPHN5.930e-752.08Flp family type IVb pilin n=2 Tax=Porphyrobacter s... [more]
UPI00070EA6EC6.200e-750.00Flp family type IVb pilin n=1 Tax=Tsuneonella troi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21290contigP-wetherbeei_contig21290:251..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1545915.JROG01000003_gene936
PFAMsFlp_Fap
Model size153
Max annot lvl204457|Sphingomonadales
KEGG koko:K02651
KEGG Pathwayko04112,map04112
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.29e-08
EggNOG OGsCOG3847@1|root,COG3847@2|Bacteria,1Q1G3@1224|Proteobacteria,2V11R@28211|Alphaproteobacteria,2K7TI@204457|Sphingomonadales
DescriptionFlp pilus assembly protein, pilin Flp
Cds size153
COG categoryU
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.940947-CDS-P-wetherbeei_contig21290:250..4031683186220.940947-CDS-P-wetherbeei_contig21290:250..403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21290 251..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21290.1.1prot_P-wetherbeei_contig21290.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21290 251..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21290.1.1

>prot_P-wetherbeei_contig21290.1.1 ID=prot_P-wetherbeei_contig21290.1.1|Name=mRNA_P-wetherbeei_contig21290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MTFIQRLWADETGVTAIEYGMIAALLALVSVPSFEALASNLSGVMTKVAF
A
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mRNA from alignment at P-wetherbeei_contig21290:251..403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21290.1.1 ID=mRNA_P-wetherbeei_contig21290.1.1|Name=mRNA_P-wetherbeei_contig21290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig21290:251..403- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTTCATCCAACGACTGTGGGCCGACGAGACCGGCGTAACGGCAAT
CGAGTACGGAATGATCGCCGCGTTGCTCGCGTTGGTTTCGGTCCCCTCGT
TTGAAGCGCTCGCGAGCAATCTTTCCGGGGTGATGACCAAGGTCGCCTTC
GCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21290:251..403-

>mRNA_P-wetherbeei_contig21290.1.1 ID=mRNA_P-wetherbeei_contig21290.1.1|Name=mRNA_P-wetherbeei_contig21290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig21290:251..403- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTTCATCCAACGACTGTGGGCCGACGAGACCGGCGTAACGGCAAT
CGAGTACGGAATGATCGCCGCGTTGCTCGCGTTGGTTTCGGTCCCCTCGT
TTGAAGCGCTCGCGAGCAATCTTTCCGGGGTGATGACCAAGGTCGCCTTC
GCC
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