mRNA_P-wetherbeei_contig2115.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2115.2.1
Unique NamemRNA_P-wetherbeei_contig2115.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2115.2.1 vs. uniprot
Match: A0A6I8P5R2_ORNAN (Ataxin-10 n=5 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8P5R2_ORNAN)

HSP 1 Score: 53.9 bits (128), Expect = 6.280e-6
Identity = 43/123 (34.96%), Postives = 57/123 (46.34%), Query Frame = 1 
Query:    1 SEVHRDVFEEDADWTLP--PEPPVSAAAAVGLKAAFRALRDACVRCPANQCTLRNTTLWLEALRFALDGASALDARDDGGEDAAPLPQRQEIERAIVSALQFAHNFAVGSPENQAALWKAAFP 363
            +E  R+     ADW     PEP +  AA      +FR LR+ACVRCPANQ  +RN  L   A+ F       L +R +G          +    A+   LQF  N A G+ + Q  +WK  FP
Sbjct:   62 TEARREAEVASADWARREHPEPCLQLAAE-----SFRCLRNACVRCPANQGVIRNLNLIGVAVDFI---CLLLRSRAEG----------ESPSSAVRCGLQFLGNIATGNSDAQDDIWKRGFP 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2115.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6I8P5R2_ORNAN6.280e-634.96Ataxin-10 n=5 Tax=Ornithorhynchus anatinus TaxID=9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2115contigP-wetherbeei_contig2115:4989..5351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog9258.ENSOANP00000031312
Preferred nameATXN10
PFAMsAtx10homo_assoc
Model size363
Max annot lvl33208|Metazoa
KEGG koko:K19323
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019899,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030425,GO:0031175,GO:0032501,GO:0032502,GO:0036477,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048471,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051259,GO:0051260,GO:0060271,GO:0065003,GO:0070206,GO:0070207,GO:0070925,GO:0071840,GO:0071944,GO:0097447,GO:0097458,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
Evalue4.22e-07
EggNOG OGsKOG2676@1|root,KOG2676@2759|Eukaryota,39FKY@33154|Opisthokonta,3BCX6@33208|Metazoa,3D18Y@33213|Bilateria,47Z1E@7711|Chordata,49757@7742|Vertebrata,3JCJB@40674|Mammalia
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-06_007380.2
Descriptionprotein homotrimerization
Cds size363
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186217.8376145-CDS-P-wetherbeei_contig2115:4988..53511683186217.8376145-CDS-P-wetherbeei_contig2115:4988..5351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2115 4989..5351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2115.2.1prot_P-wetherbeei_contig2115.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2115 4989..5351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2115.2.1

>prot_P-wetherbeei_contig2115.2.1 ID=prot_P-wetherbeei_contig2115.2.1|Name=mRNA_P-wetherbeei_contig2115.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
SEVHRDVFEEDADWTLPPEPPVSAAAAVGLKAAFRALRDACVRCPANQCT
LRNTTLWLEALRFALDGASALDARDDGGEDAAPLPQRQEIERAIVSALQF
AHNFAVGSPENQAALWKAAFP
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mRNA from alignment at P-wetherbeei_contig2115:4989..5351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2115.2.1 ID=mRNA_P-wetherbeei_contig2115.2.1|Name=mRNA_P-wetherbeei_contig2115.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig2115:4989..5351+ (Phaeothamnion wetherbeei SAG_119_79)
TCAGAAGTGCACCGCGATGTCTTTGAAGAGGATGCGGATTGGACTCTGCC
ACCCGAGCCGCCAGTCTCCGCTGCTGCGGCCGTCGGCCTCAAGGCCGCCT
TCAGAGCCCTTCGCGACGCCTGCGTGCGCTGCCCTGCCAACCAATGCACG
TTGCGAAACACGACCTTGTGGCTAGAAGCGCTCCGGTTCGCGCTGGACGG
CGCATCTGCCCTGGACGCTAGGGACGACGGCGGGGAGGACGCCGCTCCCC
TGCCGCAGAGGCAAGAAATCGAGCGCGCGATCGTCTCCGCCCTGCAGTTT
GCCCACAACTTCGCCGTCGGGAGCCCCGAAAACCAAGCAGCGCTCTGGAA
GGCGGCGTTCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2115:4989..5351+

>mRNA_P-wetherbeei_contig2115.2.1 ID=mRNA_P-wetherbeei_contig2115.2.1|Name=mRNA_P-wetherbeei_contig2115.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig2115:4989..5351+ (Phaeothamnion wetherbeei SAG_119_79)
TCAGAAGTGCACCGCGATGTCTTTGAAGAGGATGCGGATTGGACTCTGCC
ACCCGAGCCGCCAGTCTCCGCTGCTGCGGCCGTCGGCCTCAAGGCCGCCT
TCAGAGCCCTTCGCGACGCCTGCGTGCGCTGCCCTGCCAACCAATGCACG
TTGCGAAACACGACCTTGTGGCTAGAAGCGCTCCGGTTCGCGCTGGACGG
CGCATCTGCCCTGGACGCTAGGGACGACGGCGGGGAGGACGCCGCTCCCC
TGCCGCAGAGGCAAGAAATCGAGCGCGCGATCGTCTCCGCCCTGCAGTTT
GCCCACAACTTCGCCGTCGGGAGCCCCGAAAACCAAGCAGCGCTCTGGAA
GGCGGCGTTCCCG
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