mRNA_P-wetherbeei_contig2115.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig2115.1.1
Unique Name	mRNA_P-wetherbeei_contig2115.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig2115.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig2115.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig2115	contig	P-wetherbeei_contig2115:833..3624 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	2794
Hectar predicted targeting category	other localisation
Exons	1
Cds size	2790

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186217.7984264-CDS-P-wetherbeei_contig2115:834..3624	1683186217.7984264-CDS-P-wetherbeei_contig2115:834..3624	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig2115 835..3624 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig2115.1.1	prot_P-wetherbeei_contig2115.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig2115 835..3624 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig2115:833..3624-
coding sequence from alignment at P-wetherbeei_contig2115:833..3624-

protein sequence of mRNA_P-wetherbeei_contig2115.1.1

>prot_P-wetherbeei_contig2115.1.1 ID=prot_P-wetherbeei_contig2115.1.1|Name=mRNA_P-wetherbeei_contig2115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=930bp
QTEHQPLSGAAKQPPGTSAELSAGATERSAAADVAVVAATATDASCASLG
TRKASAAGERTGLNPLTAHATTSERVPESVLSSAALAPSTLLLEGGQRDR
EPALRNYVDDDGGGGGGGNGDGDDDGGDSGGAAFNNAEVEASNPGDHSDP
SEEGGHGNAGAQNGGGDDDGGGATVPAPDPRNSAVSLDVGGIGSAAGTGS
GSCYGRGAPLRRAGIGSSTYSLRVDRSRESGTSPQEAAATTVATATALTA
SVAGSPQASAPRTLSQTVPDSFEDNEESEVLALPPAPETPAPGTPAPPEA
KKEENMDDEVAATDAAAAVSPPTAIAAAAALMGATTIAAADAAGAAAEAC
RSPTDPLPSSGGFLSQTQAAGGQHGDTMLAFMLPAWARGPAAAPAVAPEA
SAVAAAALRAVLAASAAAANLPPTPRIDVETGASEASADLVGGKEEGGGL
PAAAGAVGGVAPQEAAAAGVAAGAGVGGASLQLPPVQLPPPRQSPEKRIP
ATRKPSEWLQARRNPGSPPKLRAAAAGGAGDGGNGRAKAVSSESQQYLPL
PLPPRRRAAMPPPRSPDDGDDLSASSPEASPAQPQRQCRNVEDDDDNNDD
EGGGSERPGSGGSSHRSSGAWGDGARQERRRGGAGADLTSGDGTSGGDGA
AGGGGEGDGGGDGAGDSGAGNDSGGNDGGGNDGGCNDGGGGGVGPWQLSG
LSVLLSPSALSGPAVGMCTGDLQQLNTQELEQVAGQLGRKEEALTRHLSQ
ERRRVLRGEMAAKGVAEDAAEGAAEDDAADDAAEEEADVRSGHRRATGKT
KTAEKPAAAKSAATATAAAAAATEKENAEESDDEMQTLDEALLRHRPPSK
APTASPASPGGGAATTRDGGATPTAAAWSSGDGGRGGAAAENGVGKGAAE
KAGSNKTAARPAYSPGIAPKAPAVIMRNIR

mRNA from alignment at P-wetherbeei_contig2115:833..3624-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig2115.1.1 ID=mRNA_P-wetherbeei_contig2115.1.1|Name=mRNA_P-wetherbeei_contig2115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2792bp|location=Sequence derived from alignment at P-wetherbeei_contig2115:833..3624- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGAGCACCAACCTCTGTCAGGCGCGGCAAAACAGCCGCCAGGCAC
TTCGGCAGAACTCTCTGCGGGTGCGACCGAGCGCTCTGCAGCCGCAGACG
TAGCCGTGGTTGCCGCCACCGCCACTGACGCCTCCTGCGCCTCGCTTGGG
ACGAGAAAGGCCTCGGCCGCCGGAGAACGCACGGGATTGAACCCGTTAAC
GGCTCATGCGACGACCAGCGAAAGAGTGCCCGAAAGTGTGCTGTCCTCTG
CAGCTCTGGCGCCGTCGACTCTGTTGTTGGAGGGAGGACAGCGAGATCGG
GAGCCTGCGCTCAGAAATTATGTCGATGATGATGGCGGCGGCGGAGGCGG
CGGGAACGGCGATGGCGACGACGACGGCGGCGACAGCGGCGGGGCTGCTT
TTAATAATGCTGAAGTTGAGGCCTCAAACCCGGGCGACCACAGCGACCCT
TCGGAGGAGGGTGGCCACGGCAATGCGGGCGCGCAGAACGGCGGCGGTGA
CGATGATGGCGGTGGCGCGACGGTGCCGGCCCCCGATCCCCGTAACAGCG
CCGTCTCTCTGGATGTCGGCGGCATCGGGAGTGCGGCTGGGACCGGGAGC
GGCAGCTGTTACGGCCGCGGGGCGCCGCTGCGCAGAGCGGGAATCGGGTC
GAGCACTTACAGCTTGCGTGTTGACCGGAGCAGAGAAAGCGGCACTTCGC
CGCAGGAGGCGGCGGCGACGACGGTGGCGACGGCGACGGCGCTGACAGCG
TCGGTAGCCGGCTCGCCGCAAGCCAGCGCGCCGAGGACGCTGTCACAGAC
GGTGCCCGATTCCTTTGAAGACAACGAGGAGTCTGAAGTTTTGGCGTTGC
CGCCGGCGCCGGAAACGCCGGCGCCAGGAACGCCGGCGCCGCCAGAGGCA
AAAAAGGAAGAGAACATGGACGACGAGGTGGCGGCAACGGACGCGGCGGC
AGCGGTGTCTCCGCCGACCGCGATTGCAGCCGCCGCCGCCTTGATGGGTG
CCACCACTATTGCAGCGGCGGACGCCGCCGGAGCGGCGGCGGAGGCATGC
CGCTCGCCGACTGATCCTCTCCCATCCTCCGGCGGCTTTCTGAGCCAGAC
GCAGGCGGCCGGCGGACAGCACGGCGACACAATGCTCGCGTTCATGCTGC
CTGCGTGGGCGCGAGGGCCGGCGGCGGCGCCGGCGGTGGCACCAGAAGCA
TCCGCCGTCGCCGCGGCAGCGCTGCGTGCCGTTCTGGCGGCCAGCGCCGC
CGCCGCAAATTTGCCCCCGACGCCGCGCATCGACGTCGAGACCGGCGCCT
CCGAAGCCTCCGCTGATTTGGTTGGGGGGAAGGAAGAGGGCGGCGGGCTG
CCTGCGGCGGCGGGTGCTGTGGGAGGTGTGGCGCCGCAGGAGGCAGCGGC
GGCGGGAGTTGCAGCGGGAGCAGGAGTGGGAGGAGCGTCGTTGCAGTTGC
CGCCTGTGCAGCTTCCTCCTCCCCGCCAGAGCCCGGAGAAGCGCATCCCG
GCGACCCGCAAGCCTTCGGAATGGCTGCAAGCGCGACGCAACCCCGGATC
GCCGCCCAAGCTTCGTGCCGCTGCGGCAGGTGGCGCCGGTGACGGTGGGA
ACGGTCGGGCAAAAGCCGTGAGCTCTGAATCGCAGCAGTACCTCCCGCTG
CCGCTGCCGCCGCGCCGGCGGGCCGCCATGCCGCCGCCTCGCAGCCCCGA
TGATGGCGATGACCTCTCAGCAAGCTCACCCGAGGCGTCCCCGGCACAGC
CACAGCGGCAGTGTCGCAACGTGGAAGATGATGACGACAATAATGACGAC
GAAGGAGGCGGAAGCGAGCGGCCGGGCAGCGGCGGCAGCTCCCACCGGAG
CAGCGGCGCGTGGGGCGACGGTGCACGTCAAGAACGCAGAAGAGGTGGTG
CTGGCGCAGATCTGACATCAGGGGACGGCACCTCCGGCGGCGACGGCGCC
GCTGGAGGTGGCGGCGAGGGCGACGGCGGTGGCGACGGTGCTGGCGATAG
CGGCGCCGGTAACGACAGCGGCGGCAACGATGGCGGCGGCAACGATGGCG
GCTGTAACGACGGCGGCGGCGGCGGCGTCGGGCCATGGCAGCTCTCGGGA
CTCTCGGTGCTCTTGAGCCCGTCGGCGCTCTCGGGGCCGGCTGTGGGGAT
GTGCACAGGCGACCTGCAGCAGCTCAACACGCAGGAGCTCGAGCAGGTCG
CTGGGCAGCTCGGCCGCAAGGAAGAAGCGCTAACTCGCCACCTTAGCCAG
GAGCGACGGCGCGTCTTGCGGGGCGAGATGGCGGCGAAGGGCGTTGCAGA
GGATGCCGCGGAGGGCGCGGCAGAAGACGATGCGGCGGACGACGCGGCAG
AGGAGGAGGCTGACGTTCGCTCTGGCCACCGCCGTGCCACAGGAAAGACG
AAGACCGCAGAGAAGCCGGCGGCAGCGAAGTCGGCGGCAACGGCAACAGC
TGCTGCAGCAGCTGCGACGGAGAAGGAGAACGCGGAGGAGTCAGACGACG
AGATGCAGACTTTGGACGAGGCGCTGCTGCGGCACCGACCGCCAAGCAAG
GCGCCGACAGCTAGTCCCGCCTCGCCGGGCGGCGGCGCGGCGACCACTCG
CGATGGTGGCGCCACGCCAACCGCGGCGGCGTGGAGCAGCGGTGACGGCG
GAAGGGGGGGTGCTGCAGCGGAAAACGGCGTGGGCAAGGGCGCAGCCGAG
AAGGCCGGCTCGAATAAGACGGCGGCGCGGCCGGCCTACAGCCCAGGGAT
CGCGCCCAAGGCGCCGGCCGTGATCATGCGGAACATCCGGGC

Coding sequence (CDS) from alignment at P-wetherbeei_contig2115:833..3624-

>mRNA_P-wetherbeei_contig2115.1.1 ID=mRNA_P-wetherbeei_contig2115.1.1|Name=mRNA_P-wetherbeei_contig2115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2790bp|location=Sequence derived from alignment at P-wetherbeei_contig2115:833..3624- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGAGCACCAACCTCTGTCAGGCGCGGCAAAACAGCCGCCAGGCAC
TTCGGCAGAACTCTCTGCGGGTGCGACCGAGCGCTCTGCAGCCGCAGACG
TAGCCGTGGTTGCCGCCACCGCCACTGACGCCTCCTGCGCCTCGCTTGGG
ACGAGAAAGGCCTCGGCCGCCGGAGAACGCACGGGATTGAACCCGTTAAC
GGCTCATGCGACGACCAGCGAAAGAGTGCCCGAAAGTGTGCTGTCCTCTG
CAGCTCTGGCGCCGTCGACTCTGTTGTTGGAGGGAGGACAGCGAGATCGG
GAGCCTGCGCTCAGAAATTATGTCGATGATGATGGCGGCGGCGGAGGCGG
CGGGAACGGCGATGGCGACGACGACGGCGGCGACAGCGGCGGGGCTGCTT
TTAATAATGCTGAAGTTGAGGCCTCAAACCCGGGCGACCACAGCGACCCT
TCGGAGGAGGGTGGCCACGGCAATGCGGGCGCGCAGAACGGCGGCGGTGA
CGATGATGGCGGTGGCGCGACGGTGCCGGCCCCCGATCCCCGTAACAGCG
CCGTCTCTCTGGATGTCGGCGGCATCGGGAGTGCGGCTGGGACCGGGAGC
GGCAGCTGTTACGGCCGCGGGGCGCCGCTGCGCAGAGCGGGAATCGGGTC
GAGCACTTACAGCTTGCGTGTTGACCGGAGCAGAGAAAGCGGCACTTCGC
CGCAGGAGGCGGCGGCGACGACGGTGGCGACGGCGACGGCGCTGACAGCG
TCGGTAGCCGGCTCGCCGCAAGCCAGCGCGCCGAGGACGCTGTCACAGAC
GGTGCCCGATTCCTTTGAAGACAACGAGGAGTCTGAAGTTTTGGCGTTGC
CGCCGGCGCCGGAAACGCCGGCGCCAGGAACGCCGGCGCCGCCAGAGGCA
AAAAAGGAAGAGAACATGGACGACGAGGTGGCGGCAACGGACGCGGCGGC
AGCGGTGTCTCCGCCGACCGCGATTGCAGCCGCCGCCGCCTTGATGGGTG
CCACCACTATTGCAGCGGCGGACGCCGCCGGAGCGGCGGCGGAGGCATGC
CGCTCGCCGACTGATCCTCTCCCATCCTCCGGCGGCTTTCTGAGCCAGAC
GCAGGCGGCCGGCGGACAGCACGGCGACACAATGCTCGCGTTCATGCTGC
CTGCGTGGGCGCGAGGGCCGGCGGCGGCGCCGGCGGTGGCACCAGAAGCA
TCCGCCGTCGCCGCGGCAGCGCTGCGTGCCGTTCTGGCGGCCAGCGCCGC
CGCCGCAAATTTGCCCCCGACGCCGCGCATCGACGTCGAGACCGGCGCCT
CCGAAGCCTCCGCTGATTTGGTTGGGGGGAAGGAAGAGGGCGGCGGGCTG
CCTGCGGCGGCGGGTGCTGTGGGAGGTGTGGCGCCGCAGGAGGCAGCGGC
GGCGGGAGTTGCAGCGGGAGCAGGAGTGGGAGGAGCGTCGTTGCAGTTGC
CGCCTGTGCAGCTTCCTCCTCCCCGCCAGAGCCCGGAGAAGCGCATCCCG
GCGACCCGCAAGCCTTCGGAATGGCTGCAAGCGCGACGCAACCCCGGATC
GCCGCCCAAGCTTCGTGCCGCTGCGGCAGGTGGCGCCGGTGACGGTGGGA
ACGGTCGGGCAAAAGCCGTGAGCTCTGAATCGCAGCAGTACCTCCCGCTG
CCGCTGCCGCCGCGCCGGCGGGCCGCCATGCCGCCGCCTCGCAGCCCCGA
TGATGGCGATGACCTCTCAGCAAGCTCACCCGAGGCGTCCCCGGCACAGC
CACAGCGGCAGTGTCGCAACGTGGAAGATGATGACGACAATAATGACGAC
GAAGGAGGCGGAAGCGAGCGGCCGGGCAGCGGCGGCAGCTCCCACCGGAG
CAGCGGCGCGTGGGGCGACGGTGCACGTCAAGAACGCAGAAGAGGTGGTG
CTGGCGCAGATCTGACATCAGGGGACGGCACCTCCGGCGGCGACGGCGCC
GCTGGAGGTGGCGGCGAGGGCGACGGCGGTGGCGACGGTGCTGGCGATAG
CGGCGCCGGTAACGACAGCGGCGGCAACGATGGCGGCGGCAACGATGGCG
GCTGTAACGACGGCGGCGGCGGCGGCGTCGGGCCATGGCAGCTCTCGGGA
CTCTCGGTGCTCTTGAGCCCGTCGGCGCTCTCGGGGCCGGCTGTGGGGAT
GTGCACAGGCGACCTGCAGCAGCTCAACACGCAGGAGCTCGAGCAGGTCG
CTGGGCAGCTCGGCCGCAAGGAAGAAGCGCTAACTCGCCACCTTAGCCAG
GAGCGACGGCGCGTCTTGCGGGGCGAGATGGCGGCGAAGGGCGTTGCAGA
GGATGCCGCGGAGGGCGCGGCAGAAGACGATGCGGCGGACGACGCGGCAG
AGGAGGAGGCTGACGTTCGCTCTGGCCACCGCCGTGCCACAGGAAAGACG
AAGACCGCAGAGAAGCCGGCGGCAGCGAAGTCGGCGGCAACGGCAACAGC
TGCTGCAGCAGCTGCGACGGAGAAGGAGAACGCGGAGGAGTCAGACGACG
AGATGCAGACTTTGGACGAGGCGCTGCTGCGGCACCGACCGCCAAGCAAG
GCGCCGACAGCTAGTCCCGCCTCGCCGGGCGGCGGCGCGGCGACCACTCG
CGATGGTGGCGCCACGCCAACCGCGGCGGCGTGGAGCAGCGGTGACGGCG
GAAGGGGGGGTGCTGCAGCGGAAAACGGCGTGGGCAAGGGCGCAGCCGAG
AAGGCCGGCTCGAATAAGACGGCGGCGCGGCCGGCCTACAGCCCAGGGAT
CGCGCCCAAGGCGCCGGCCGTGATCATGCGGAACATCCGG