mRNA_P-wetherbeei_contig21133.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A6I3EWT5_9ACTN (Arginine--tRNA ligase n=3 Tax=root TaxID=1 RepID=A0A6I3EWT5_9ACTN) HSP 1 Score: 337 bits (863), Expect = 5.050e-110 Identity = 178/241 (73.86%), Postives = 197/241 (81.74%), Query Frame = 1
Query: 1 DAFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVAL--LPTDLATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLGAHAESVIDNDDPNAFYQAARAKFEGDDDFKARARERVVKLQSGDAETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
DAFA VTGLPA IDPVVRPSDRADAQ N ALALAKQVGRNPRE+A VVA L + EVAGPGFIN+TF +AF+A+QLA ++ D RLGVR AA ER VVDYSAPNVAKEMHVGHLRSTVIGDS+VRLL F+GH+VVRENHIGDWGTPFGMLIEHL+DLG A ID DPN FYQAARAKF+ DDDFKARAR+RVV LQSGD T+++WQ+LVD S YFD +Y LGVLLT D
Sbjct: 14 DAFASVTGLPAVGIDPVVRPSDRADAQVNGALALAKQVGRNPREVADAVVATGALAAICSAVEVAGPGFINLTFTEAFLAEQLAASAEDARLGVRMAAVTERAVVDYSAPNVAKEMHVGHLRSTVIGDSIVRLLQFVGHEVVRENHIGDWGTPFGMLIEHLLDLGDSA--AIDMSDPNPFYQAARAKFDADDDFKARARDRVVALQSGDPSTLAIWQRLVDNSAEYFDIVYRQLGVLLTHD 252
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A3C2B0R6_9ACTN (Arginine--tRNA ligase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B0R6_9ACTN) HSP 1 Score: 307 bits (786), Expect = 2.070e-98 Identity = 166/244 (68.03%), Postives = 191/244 (78.28%), Query Frame = 1
Query: 1 DAFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVV---ALLPTDLATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLGA-HAESVIDNDDPNAFYQAARAKFEGDDDFKARARERVVKLQSG-DAETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
DAFA VTGLPA IDPVVRPS+RADAQ N ALALAKQ+GRNPR++A VV AL AT EVAGPGFIN+TF F+ +QLA A+AD R+GVR AA+PE VVDYSAPNVAKEMHVGHLR+T+IGD+LVR+L FLGH V+RENHIGDWGTPFGMLIEH+VDLG E +D DP+AFY+ ARAKF+ D+FK RAR RV LQS DA TM++WQ+LVD S YFD +Y LGVLL D
Sbjct: 14 DAFAAVTGLPADSIDPVVRPSERADAQVNGALALAKQLGRNPRDVAQAVVDTGALSGVCSAT-EVAGPGFINLTFTPEFLGEQLAAAAADQRVGVRPAANPEIAVVDYSAPNVAKEMHVGHLRTTLIGDALVRMLEFLGHTVIRENHIGDWGTPFGMLIEHMVDLGGVDTELTVDLSDPSAFYKQARAKFDASDEFKDRARARVTLLQSRTDAPTMAIWQKLVDKSADYFDVVYGKLGVLLRRD 256
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A3C1L7E9_9ACTN (Arginine--tRNA ligase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L7E9_9ACTN) HSP 1 Score: 301 bits (771), Expect = 4.190e-96 Identity = 165/248 (66.53%), Postives = 190/248 (76.61%), Query Frame = 1
Query: 1 DAFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVA--LLPTDLATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLGAHAESVIDNDDP------NAFYQAARAKFEGDDDFKARARERVVKLQSGD-AETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
+AFA VTG+PA IDPVVRPSDRADAQAN ALALAKQ+GRNPRE+A VVA LL + EVAGPGFIN+TF F+A QL A+A DRLGVR+A PER VVDYSAPNVAKEMH GHLR+TVIGDSLVRLL F+GH+V+RENHIGDWGTPFGMLIEHLVD+ + + +D D N FY+ AR KF+ D+FKARAR+RVVKLQS D ET +LW LV S ++F+ Y LGVLLTDD
Sbjct: 14 EAFAAVTGMPAAGIDPVVRPSDRADAQANGALALAKQLGRNPREVAEAVVATGLLDAVCSHVEVAGPGFINLTFTPQFLAAQLVDAAATDRLGVRSAESPERAVVDYSAPNVAKEMHAGHLRTTVIGDSLVRLLEFMGHEVIRENHIGDWGTPFGMLIEHLVDVASVDVAGVDGVDDLEVADLNVFYREARTKFDESDEFKARARDRVVKLQSRDHLETTNLWLALVHQSTKHFNEAYRKLGVLLTDD 261
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A6I2WMB9_9ACTN (Arginine--tRNA ligase n=4 Tax=root TaxID=1 RepID=A0A6I2WMB9_9ACTN) HSP 1 Score: 299 bits (766), Expect = 1.860e-95 Identity = 158/239 (66.11%), Postives = 185/239 (77.41%), Query Frame = 1
Query: 7 FARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVALLPTDL---ATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLG-AHAESVIDNDDPNAFYQAARAKFEGDDDFKARARERVVKLQSGDAETMSLWQQLVDTSMRYFDAIYADLGVLLT 711
F VTG+ A DPVVR SDRADAQ N ALA AKQVGRNPRE+AAE+VA L AT E+AGPGFIN+TF DAFVA +LA A+ D LGVR ER++VDYSAPNVAKEMHVGHLR+T+IGD+LVR+L F+GH+V+RENHIGDWGTPFGMLIEHL+DLG A A + + D + FY+ AR KF+ DDDFK R+R RVV LQSGD ET+ LWQ+LVD S YF+ +Y LGVLLT
Sbjct: 16 FRAVTGVDA---DPVVRASDRADAQVNGALAAAKQVGRNPREVAAEIVAAAADPLRGLATMEIAGPGFINLTFSDAFVAGELASAARDPHLGVRPTPVAERIIVDYSAPNVAKEMHVGHLRTTIIGDALVRMLEFVGHEVIRENHIGDWGTPFGMLIEHLLDLGEAEAANELSVGDLDGFYRQARVKFDSDDDFKQRSRLRVVALQSGDVETLRLWQELVDASAAYFNIVYRKLGVLLT 251
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A7K1B690_9ACTN (Arginine--tRNA ligase n=2 Tax=root TaxID=1 RepID=A0A7K1B690_9ACTN) HSP 1 Score: 296 bits (759), Expect = 2.020e-94 Identity = 158/237 (66.67%), Postives = 183/237 (77.22%), Query Frame = 1
Query: 4 AFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVALLPTD-LATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLGAHAESVIDNDDPNAFYQAARAKFEGDDDFKARARERVVKLQS-GDAETMSLWQQLVDTSMRYFDAIYADLGVLL 708
AF RV G G +DPVVRPSDRA AQAN AL LAK++GRNPRE+A E+VA D +A EVAGPGFIN+TF F+A Q+A+ +ADD LGVR AA PE VVVDYSAPNVAKEMHVGHLR+T+IGD+LVR+LGF+GH V+RENHIGDWGTPFGMLIEH++DLG ID DP A Y+ ARAKF+ D+FK RAR+RV LQS D TM LWQ+LVD S YFD +Y LGVLL
Sbjct: 15 AFERVAGR--GGVDPVVRPSDRAHAQANGALPLAKELGRNPREVATEIVAAAALDGVAALEVAGPGFINLTFTAEFLAGQVALVAADDHLGVRPAAAPETVVVDYSAPNVAKEMHVGHLRTTLIGDALVRMLGFVGHRVIRENHIGDWGTPFGMLIEHVIDLGGELGE-IDLTDPGALYKQARAKFDASDEFKERARQRVTLLQSRSDPMTMELWQRLVDQSADYFDLVYGRLGVLL 248
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A6J7FH50_9ZZZZ (Arginine--tRNA ligase n=2 Tax=root TaxID=1 RepID=A0A6J7FH50_9ZZZZ) HSP 1 Score: 290 bits (742), Expect = 1.380e-91 Identity = 158/246 (64.23%), Postives = 188/246 (76.42%), Query Frame = 1
Query: 4 AFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVALLPTDLA----TFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLGAHAESVIDND----DPNAFYQAARAKFEGDDDFKARARERVVKLQSGDAETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
AFA V G A DPVVRPSDRADAQAN ALA+AKQVG+NPR++A EV+A+ LA T E+AGPGF+N+TF D+F+A QLA A+AD RLGVRTA E ++VDYS PNVAKEMHVGHLR+TVIGDSLVR+L +GH V +ENHIGDWGTPFGMLIEH++DLG E+ ND D FY+ ARAKF+ D+ F+ RAR+RVV LQ GDAET+ LW LV S RYF+ +YA LGVLLTD+
Sbjct: 39 AFAAVGGEGA---DPVVRPSDRADAQANGALAIAKQVGKNPRQVAEEVLAIAREQLADVCSTIEIAGPGFLNLTFSDSFLAQQLAEAAADPRLGVRTATLAEHIIVDYSHPNVAKEMHVGHLRTTVIGDSLVRMLQLVGHRVTKENHIGDWGTPFGMLIEHMLDLG---ETTAANDLSVGDLAGFYKGARAKFDADEVFQDRARQRVVLLQGGDAETLRLWGILVAESTRYFNGVYATLGVLLTDE 278
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: UPI000836B389 (arginine--tRNA ligase n=1 Tax=Actinomadura rubrobrunea TaxID=115335 RepID=UPI000836B389) HSP 1 Score: 288 bits (737), Expect = 4.640e-91 Identity = 150/243 (61.73%), Postives = 184/243 (75.72%), Query Frame = 1
Query: 1 DAFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVALLPTD--LATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLGAHAESVIDND--DPNAFYQAARAKFEGDDDFKARARERVVKLQSGDAETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
DA A V G + DPV+RPS AD QAN ALALAK+ GR PRELA E+VA L T +A EV+GPGFIN+T DA++A+Q A A AD+RLGV P++V+V+YS+PNVAKEMHVGHLR+T++GDS+ R+L FLGH VVR+NHIGDWGTPFGMLIEHL+D+G A D+ D AFYQAAR KF+GD +F R+R RVV+LQ+GD ET+ LW+ LVD S RYF+ +YA LGV LTDD
Sbjct: 14 DALAAVLGPSYADADPVIRPSQFADLQANVALALAKKAGRKPRELADEIVAHLDTGDVIAKAEVSGPGFINLTLSDAWIAEQTAQALADERLGVPPVESPQKVIVEYSSPNVAKEMHVGHLRTTIVGDSIARILEFLGHRVVRDNHIGDWGTPFGMLIEHLLDIGEDAAERDDSSVADLTAFYQAARQKFDGDPEFAERSRLRVVRLQAGDPETLRLWRILVDVSKRYFNTVYARLGVTLTDD 256
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A539E041_9ACTN (Arginine--tRNA ligase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E041_9ACTN) HSP 1 Score: 284 bits (727), Expect = 2.010e-89 Identity = 150/241 (62.24%), Postives = 184/241 (76.35%), Query Frame = 1
Query: 4 AFARVTGLPAGEI-DPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVALLPTD-LATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLG-AHAESVIDNDDPNAFYQAARAKFEGDDDFKARARERVVKLQSGDAETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
AF +V G AG + DPVVRPSDRADAQAN ALALAKQ+GRNPR++AA+VVA D +AT EVAGPGFIN+TF D ++A LA +AD+ LG ++ P V+DYS PNVAKEMHVGHLRST+IGD + R++ FLGH V+RENHIGDWG PFGMLIEHL+DLG A A + D N+FY+ A KF D+ F+ RAR+RVV+LQ GD ET+ LW+ LV S RYF+++YA LGVLL+DD
Sbjct: 30 AFRQVAGPVAGAVVDPVVRPSDRADAQANGALALAKQLGRNPRDVAADVVAAARLDGVATLEVAGPGFINVTFADDYLAASLAAIAADELLGASQSSSPLTAVIDYSHPNVAKEMHVGHLRSTIIGDCIARVMTFLGHRVIRENHIGDWGRPFGMLIEHLLDLGEAEAAHELSVGDMNSFYREAGRKFAADEAFQVRARQRVVELQGGDPETLRLWRLLVHESTRYFNSVYARLGVLLSDD 270
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A6L6DW69_9ACTN (Arginine--tRNA ligase n=4 Tax=root TaxID=1 RepID=A0A6L6DW69_9ACTN) HSP 1 Score: 283 bits (724), Expect = 3.680e-89 Identity = 151/245 (61.63%), Postives = 183/245 (74.69%), Query Frame = 1
Query: 4 AFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVAL---LPTDLATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLG----AHAESVIDNDDPNAFYQAARAKFEGDDDFKARARERVVKLQSGDAETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
AFA V G DPVVRPSDRADAQAN ALALAK +G PR++A V+ + LA+ E+AGPGFIN+ F + ++A Q+A+A AD+RLGVR + P VV+DYSAPNVAKEMHVGHLRSTVIGD+LVR+L F+GH V++ENHIGDWGTPFGMLIEHL+DLG AH V D D FY+ ARAKFE D+FK RAR+RVV LQ GDA+T+ +W+ LV S RYF+ +Y+ L VLLTDD
Sbjct: 15 AFAAVAG---NACDPVVRPSDRADAQANGALALAKALGSTPRDVAQRVLDAAGDVSDVLASTEIAGPGFINLVFTNEYLATQVAIAMADERLGVRASTDPHTVVIDYSAPNVAKEMHVGHLRSTVIGDALVRVLSFVGHTVIKENHIGDWGTPFGMLIEHLIDLGEENAAHELGVGDLD---GFYKQARAKFEASDEFKTRARQRVVLLQGGDADTLRMWRTLVQESTRYFNKVYSQLDVLLTDD 253
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Match: A0A7K0ZD98_9ACTN (Arginine--tRNA ligase n=5 Tax=root TaxID=1 RepID=A0A7K0ZD98_9ACTN) HSP 1 Score: 281 bits (718), Expect = 2.900e-88 Identity = 152/246 (61.79%), Postives = 181/246 (73.58%), Query Frame = 1
Query: 1 DAFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVAL---LPTDLATFEVAGPGFINITFHDAFVADQLAVASADDRLGVRTAAHPERVVVDYSAPNVAKEMHVGHLRSTVIGDSLVRLLGFLGHDVVRENHIGDWGTPFGMLIEHLVDLG----AHAESVIDNDDPNAFYQAARAKFEGDDDFKARARERVVKLQSGDAETMSLWQQLVDTSMRYFDAIYADLGVLLTDD 717
DAF+ V G +DPVVRPSDRADAQAN ALA+AK +G PRE+A + + L LA+ E+AGPGFIN+ F D F+A QL +A A+ LGVR + P VV+DYSAPNVAKEMHVGHLRSTVIGD+LVR+L F+G+ VVRENHIGDWGTPFGMLIEHL+DLG AH V D D FY+ AR+KFE D+FK RAR+RVV LQSGD +TM LW+ LV S RYF+ +Y L VLLTD+
Sbjct: 14 DAFSAVAGT---TVDPVVRPSDRADAQANGALAIAKSMGAQPREVAQKALDAAGDLSDILASTEIAGPGFINLVFSDEFIAQQLTLAMAEATLGVRVSPDPHTVVIDYSAPNVAKEMHVGHLRSTVIGDALVRVLEFVGNTVVRENHIGDWGTPFGMLIEHLIDLGEESAAHELGVGDLD---GFYKQARSKFEASDEFKTRARQRVVMLQSGDEDTMRLWRTLVKESTRYFNKVYTQLDVLLTDE 253 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21133.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig21133.1.1 >prot_P-wetherbeei_contig21133.1.1 ID=prot_P-wetherbeei_contig21133.1.1|Name=mRNA_P-wetherbeei_contig21133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp DAFARVTGLPAGEIDPVVRPSDRADAQANAALALAKQVGRNPRELAAEVVback to top mRNA from alignment at P-wetherbeei_contig21133:1..717- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig21133.1.1 ID=mRNA_P-wetherbeei_contig21133.1.1|Name=mRNA_P-wetherbeei_contig21133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig21133:1..717- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig21133:1..717- >mRNA_P-wetherbeei_contig21133.1.1 ID=mRNA_P-wetherbeei_contig21133.1.1|Name=mRNA_P-wetherbeei_contig21133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig21133:1..717- (Phaeothamnion wetherbeei SAG_119_79)back to top |