mRNA_P-wetherbeei_contig21115.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21115.1.1
Unique NamemRNA_P-wetherbeei_contig21115.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: K0SVL0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVL0_THAOC)

HSP 1 Score: 89.0 bits (219), Expect = 1.640e-17
Identity = 57/171 (33.33%), Postives = 82/171 (47.95%), Query Frame = 1
Query:    1 SKQLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKTERIVWRLPPNSATAGTSAXXXXXXXXXXXXXXPPSGPTPSADERIVEVRADDPPSHKAKLQDVIAAADADMGFARAAPAEEERRWRRRRAFLYVRDKHVMGCVVAEPVETAF 513
            S QLFLDFGQ+SFGK   C  CG+LF++  E++  +H   C+        G+   GWK ER V       +T GT                         DERI+E+R  D PSH  K++ V A  D  MGFA++   +EE        +LY+  + V+G +V + +  A+
Sbjct:  263 SNQLFLDFGQKSFGKQSVCRECGMLFMESSEEDVKQHDVICK----DYKEGVVCLGWKNERSV-------STLGT-------------------------DERILEIRPGDAPSHWRKVEQVKAIVDKSMGFAQSGRKKEEDD-AGMTCYLYIAKRRVVGLLVVKRIHRAY 396          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: A0A836CNA6_9STRA (ESCO1/2 acetyl-transferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.390e-17
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 1
Query:    7 QLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKTERIVWRLPPNSAT--AGTSAXXXXXXXXXXXXXXPPSGPTPSADERIVEVRADDPPSHKAKLQDVIAAADADMGFARAAPAEEERRWRRRRAFLYVRDKHVMGCVVAEPV 501
            Q+ LD GQR FG+   C RCG+L++     +   H++ C    A   +G+ F GWK ER+        AT   G   XXXXXXXXXXXXXX  S        R+VE+R+ DP +H AKL +V A  D DMGFA A P +  RR     AFLY+    V GCV+ EP+
Sbjct:   64 QMCLDLGQRDFGRRSQCARCGMLWLPSDPGDAEAHARHC----AAHAAGVAFAGWKHERV-------QATFHGGXXXXXXXXXXXXXXXXXXXSA---GKGARVVEIRSGDPAAHVAKLSEVKALMDEDMGFAHA-PMKAGRR-----AFLYITANKVAGCVIVEPI 210          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: B8BTC6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTC6_THAPS)

HSP 1 Score: 82.4 bits (202), Expect = 3.490e-15
Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = 1
Query:    4 KQLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTG-WKTERIVWRLPPNSATAGTSAXXXXXXXXXXXXXXPPSGPTPSADERIVEVRADDPPSHKAKLQDVIAAADADMGFA----RAAPAEEERRWRRRRAFLYVRDKHVMGCVVAEPVETAF 513
            +QL+LDFGQ +FGK   C  CG+L V G+++++ +H K CR        G+ F G WK ER V R    S++ G                   SG +   + RIVEVR +D    K K+ +V    D +MGFA    R+   + E +     ++LY+  K V+G ++ + V+ A+
Sbjct:  343 QQLYLDFGQSTFGKQSICSLCGMLRVHGLQEDDDQHDKVCR----DYKEGVVFGGGWKNERCVGRFGVCSSSGGGG-----------------SGKSGGEEGRIVEVRPEDGVVMKQKVLEVKEIVDKEMGFAVASKRSGFEDGEDQLEGITSYLYIAKKRVVGLLLVKHVKRAY 496          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: A0A7S1G1E2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1E2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.140e-9
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    7 QLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKT--ERIVW 192
            Q++LDFGQ+SFGK   C +CG+L++ G+E++EA H K C+  +     G+PF   K   +R VW
Sbjct:   85 QMYLDFGQKSFGKNTTCEKCGMLYMNGMEEDEATHRKVCQSYL----HGVPFRSKKMMRDRTVW 144          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: A0A7S1Z443_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z443_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.440e-9
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    7 QLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTG-WKTERIV 189
            QL+LDFGQ SFG+   C  C +L+V G+E++   H K C     +   G+PF G WKTER+V
Sbjct:  195 QLYLDFGQSSFGQQTICPMCNMLYVHGVEEDVLNHRKICE----SYNLGVPFAGGWKTERLV 252          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: A0A2H9ZSQ6_9ASPA (N-acetyltransferase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZSQ6_9ASPA)

HSP 1 Score: 65.9 bits (159), Expect = 1.500e-9
Identity = 48/171 (28.07%), Postives = 76/171 (44.44%), Query Frame = 1
Query:    4 KQLFLDFGQRSFGKPVH-CHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKTERIVWRLPPNSATAGTSAXXXXXXXXXXXXXXPPSGPTPSADERIVEVRADDPPSHKAKLQDVIAAADADMGFARAAPAEEERRWRRRRAFLYVRDKHVMGCVVAEPVETAF 513
            +Q +LD GQ  F   +H C  CGL++ +G+E++E  H KF +        GI    W+ ER+V  L PN   +                             RIV V   DPP+ + K+Q V      ++GF       E  +      +L++    ++GC+VAEP++TA+
Sbjct:   71 EQYYLDLGQSDF--VLHTCSVCGLMYARGVEEDEQVHRKFHQEF----NKGIQIKSWQNERVV--LTPNINAS-----------------------------RIVLVLRSDPPTQQHKVQKVANLMVKELGFNAEHLIHEHCK-----VYLFICGHRIVGCLVAEPIKTAY 199          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: A0A7S2M707_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M707_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.030e-9
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    7 QLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKTERIV 189
            QLFLDFGQ SFGK   C+ CG++ V G+ +++ +H+K C+        G+   GWK ER V
Sbjct:   92 QLFLDFGQASFGKRTVCNICGMMRVHGVTEDDVQHAKICK----DYKEGVTCLGWKNERKV 148          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: R1C5H1_EMIHU (zf-C2H2_3 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C5H1_EMIHU)

HSP 1 Score: 60.5 bits (145), Expect = 1.560e-8
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 1
Query:    7 QLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKTERIVWRLPPNS 210
            QL+LDFGQRSFG+ + C  CGL++ +G   +EA H     RA+     G P    ++E +  RLP  S
Sbjct:    2 QLYLDFGQRSFGRQITCPECGLMYTEGEPNDEAGHRAHHERALR----GAPMRECESESVACRLPDGS 65          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: A0A1Z5K1X0_FISSO (N-acetyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1X0_FISSO)

HSP 1 Score: 61.6 bits (148), Expect = 2.750e-8
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    4 KQLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKTERIV 189
            +QL+LD GQR FGKPVHCH CG+++V G++++   H++ C         G+ +T     R+V
Sbjct:   41 EQLYLDLGQRDFGKPVHCHTCGMMYVPGVKEDGMTHAQRCH----VFQHGVRWTPTPAMRLV 98          
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Match: A0A7S3AIS9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AIS9_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 5.640e-8
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    4 KQLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGSGIPFTGWKTERIVWRLP 201
            +Q++LDFGQR+FG+ V C +CG+ + +G   +E  H K  R+A+A    G+   G   ER+V  LP
Sbjct:   24 EQMYLDFGQRTFGRHVLCEQCGMRYCEGEPTDEEAHRKHHRKALA----GVIVRGGAAERLVHTLP 85          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21115.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
K0SVL0_THAOC1.640e-1733.33Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A836CNA6_9STRA2.390e-1743.71ESCO1/2 acetyl-transferase-domain-containing prote... [more]
B8BTC6_THAPS3.490e-1532.57Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1G1E2_9STRA1.140e-943.75Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1Z443_9STRA1.440e-946.77Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2H9ZSQ6_9ASPA1.500e-928.07N-acetyltransferase n=1 Tax=Apostasia shenzhenica ... [more]
A0A7S2M707_9STRA6.030e-944.26Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
R1C5H1_EMIHU1.560e-841.18zf-C2H2_3 domain-containing protein n=1 Tax=Emilia... [more]
A0A1Z5K1X0_FISSO2.750e-840.32N-acetyltransferase n=1 Tax=Fistulifera solaris Ta... [more]
A0A7S3AIS9_9EUKA5.640e-840.91Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21115contigP-wetherbeei_contig21115:665..1177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo138043
PFAMsAcetyltransf_13,zf-C2H2_3
Model size513
Max annot lvl4776|Peronosporales
KEGG koko:K11268
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.08e-24
EggNOG OGsKOG3014@1|root,KOG3014@2759|Eukaryota,3QBFG@4776|Peronosporales
Descriptionzinc-finger of acetyl-transferase ESCO
Cds size513
COG categoryL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.9552727-CDS-P-wetherbeei_contig21115:664..11771683186216.9552727-CDS-P-wetherbeei_contig21115:664..1177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21115 665..1177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21115.1.1prot_P-wetherbeei_contig21115.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21115 665..1177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21115.1.1

>prot_P-wetherbeei_contig21115.1.1 ID=prot_P-wetherbeei_contig21115.1.1|Name=mRNA_P-wetherbeei_contig21115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
SKQLFLDFGQRSFGKPVHCHRCGLLFVKGIEQEEAEHSKFCRRAIATTGS
GIPFTGWKTERIVWRLPPNSATAGTSAAAAAATAAPAAALAPPSGPTPSA
DERIVEVRADDPPSHKAKLQDVIAAADADMGFARAAPAEEERRWRRRRAF
LYVRDKHVMGCVVAEPVETAF
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mRNA from alignment at P-wetherbeei_contig21115:665..1177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21115.1.1 ID=mRNA_P-wetherbeei_contig21115.1.1|Name=mRNA_P-wetherbeei_contig21115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig21115:665..1177+ (Phaeothamnion wetherbeei SAG_119_79)
TCCAAACAGCTATTTCTGGACTTCGGCCAGCGGAGCTTCGGAAAACCTGT CCACTGCCACCGCTGCGGCTTGCTGTTTGTCAAGGGAATCGAGCAGGAGG AGGCCGAGCACAGCAAATTCTGCCGCCGCGCTATCGCGACGACCGGCAGC GGCATCCCTTTTACCGGCTGGAAGACCGAGCGTATCGTTTGGCGCCTTCC CCCCAACTCGGCCACGGCCGGAACCTCCGCCGCCGCCGCTGCCGCCACCG CGGCCCCCGCCGCGGCGCTGGCGCCTCCCTCCGGGCCGACGCCATCCGCC GACGAACGTATCGTTGAAGTGCGGGCGGACGACCCCCCGAGCCACAAAGC GAAGCTGCAAGACGTTATTGCCGCGGCCGACGCTGACATGGGCTTTGCGC GGGCGGCGCCGGCCGAGGAGGAGCGGCGGTGGCGGCGGCGGCGGGCGTTC CTGTACGTCCGGGACAAGCACGTCATGGGCTGCGTGGTCGCCGAGCCGGT GGAGACGGCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21115:665..1177+

>mRNA_P-wetherbeei_contig21115.1.1 ID=mRNA_P-wetherbeei_contig21115.1.1|Name=mRNA_P-wetherbeei_contig21115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig21115:665..1177+ (Phaeothamnion wetherbeei SAG_119_79)
TCCAAACAGCTATTTCTGGACTTCGGCCAGCGGAGCTTCGGAAAACCTGT
CCACTGCCACCGCTGCGGCTTGCTGTTTGTCAAGGGAATCGAGCAGGAGG
AGGCCGAGCACAGCAAATTCTGCCGCCGCGCTATCGCGACGACCGGCAGC
GGCATCCCTTTTACCGGCTGGAAGACCGAGCGTATCGTTTGGCGCCTTCC
CCCCAACTCGGCCACGGCCGGAACCTCCGCCGCCGCCGCTGCCGCCACCG
CGGCCCCCGCCGCGGCGCTGGCGCCTCCCTCCGGGCCGACGCCATCCGCC
GACGAACGTATCGTTGAAGTGCGGGCGGACGACCCCCCGAGCCACAAAGC
GAAGCTGCAAGACGTTATTGCCGCGGCCGACGCTGACATGGGCTTTGCGC
GGGCGGCGCCGGCCGAGGAGGAGCGGCGGTGGCGGCGGCGGCGGGCGTTC
CTGTACGTCCGGGACAAGCACGTCATGGGCTGCGTGGTCGCCGAGCCGGT
GGAGACGGCCTTC
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