mRNA_P-wetherbeei_contig21114.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21114.1.1
Unique NamemRNA_P-wetherbeei_contig21114.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21114.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21114contigP-wetherbeei_contig21114:262..963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size660
Hectar predicted targeting categoryother localisation
Exons2
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.9080272-UTR-P-wetherbeei_contig21114:261..2671683186216.9080272-UTR-P-wetherbeei_contig21114:261..267Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21114 262..267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.9181612-CDS-P-wetherbeei_contig21114:267..5941683186216.9181612-CDS-P-wetherbeei_contig21114:267..594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21114 268..594 +
1683186216.9276044-CDS-P-wetherbeei_contig21114:636..9631683186216.9276044-CDS-P-wetherbeei_contig21114:636..963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21114 637..963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21114.1.1prot_P-wetherbeei_contig21114.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21114 268..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21114.1.1

>prot_P-wetherbeei_contig21114.1.1 ID=prot_P-wetherbeei_contig21114.1.1|Name=mRNA_P-wetherbeei_contig21114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
MWIQTLNSQKSASYVERFDRLMKYRAQSPENEAKLDKAMRALEKAALSLP
VSESLLSIFMGLPDTADDQPFTGLSYGRRTCDPTAQRDEYLKLASHADAL
LKFLGKPGAELHIPKTHDAKTIKSSATEADRLYQAGMGGRRGLIELKWLA
AALRGANPHRWYLTKQPLAEDRARKTYVKLVAGLNRYLSKGQHVALATLA
NANLPGQKVTPDEIRKAW
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mRNA from alignment at P-wetherbeei_contig21114:262..963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21114.1.1 ID=mRNA_P-wetherbeei_contig21114.1.1|Name=mRNA_P-wetherbeei_contig21114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig21114:262..963+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGTCATGTGGATCCAGACGCTCAATTCACAAAAGAGCGCCAGTTACGT
AGAGCGCTTTGACCGATTGATGAAGTATCGTGCGCAGAGCCCCGAGAACG
AGGCCAAGCTGGACAAGGCAATGAGAGCTTTGGAAAAAGCAGCGTTGTCT
CTCCCCGTTTCCGAGTCGCTGCTCTCTATTTTCATGGGATTGCCAGACAC
TGCAGACGATCAGCCGTTTACTGGCTTGTCATACGGCCGACGGACATGTG
ATCCGACCGCGCAACGCGATGAGTATTTGAAGCTGGCTTCTCATGCGGAC
GCGCTGCTCAAGTTTCTTGGCAAGCCCGGAGCGGTTGCAATGCTGTTGGC
CGATCAGGAGCTTGGGTCGAACGAGGAGCTACACATTCCGAAAACACACG
ATGCCAAGACCATAAAAAGCAGTGCAACTGAGGCGGACAGACTTTATCAA
GCTGGCATGGGGGGCCGCCGTGGTCTCATCGAGCTCAAATGGTTGGCGGC
CGCGCTTCGTGGTGCGAACCCGCATCGCTGGTATTTGACGAAACAGCCAT
TGGCTGAAGATCGAGCGAGAAAAACCTATGTCAAGTTGGTGGCTGGCCTT
AATCGGTATCTGTCGAAGGGGCAGCATGTGGCCCTCGCTACGCTGGCCAA
TGCCAATTTACCGGGTCAAAAGGTGACGCCGGATGAAATTCGGAAAGCTT
GG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21114:262..963+

>mRNA_P-wetherbeei_contig21114.1.1 ID=mRNA_P-wetherbeei_contig21114.1.1|Name=mRNA_P-wetherbeei_contig21114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig21114:262..963+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGATCCAGACGCTCAATTCACAAAAGAGCGCCAGTTACGTAGAGCG
CTTTGACCGATTGATGAAGTATCGTGCGCAGAGCCCCGAGAACGAGGCCA
AGCTGGACAAGGCAATGAGAGCTTTGGAAAAAGCAGCGTTGTCTCTCCCC
GTTTCCGAGTCGCTGCTCTCTATTTTCATGGGATTGCCAGACACTGCAGA
CGATCAGCCGTTTACTGGCTTGTCATACGGCCGACGGACATGTGATCCGA
CCGCGCAACGCGATGAGTATTTGAAGCTGGCTTCTCATGCGGACGCGCTG
CTCAAGTTTCTTGGCAAGCCCGGAGCGGAGCTACACATTCCGAAAACACA
CGATGCCAAGACCATAAAAAGCAGTGCAACTGAGGCGGACAGACTTTATC
AAGCTGGCATGGGGGGCCGCCGTGGTCTCATCGAGCTCAAATGGTTGGCG
GCCGCGCTTCGTGGTGCGAACCCGCATCGCTGGTATTTGACGAAACAGCC
ATTGGCTGAAGATCGAGCGAGAAAAACCTATGTCAAGTTGGTGGCTGGCC
TTAATCGGTATCTGTCGAAGGGGCAGCATGTGGCCCTCGCTACGCTGGCC
AATGCCAATTTACCGGGTCAAAAGGTGACGCCGGATGAAATTCGGAAAGC
TTGG
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