mRNA_P-wetherbeei_contig2111.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2111.2.1
Unique NamemRNA_P-wetherbeei_contig2111.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.230e-25
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   13 PQRFQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTERATI 225
            P +FQEQ+GMPKEEDLNSWSHH++TDT DDPVFR A+ GTGDSLVSFVFGLEVTW LL  Q   + E  T+
Sbjct:  947 PAKFQEQMGMPKEEDLNSWSHHYSTDTADDPVFRGAMMGTGDSLVSFVFGLEVTWDLLSVQLEQEAEARTL 1017
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A7S1DCT5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCT5_CYCTE)

HSP 1 Score: 91.3 bits (225), Expect = 7.610e-21
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTERATI 225
            FQEQ+GMP EED+ +WSHH++TD+VDDP+FRAA+ G   S VSFVFGLEVTW L+Q ++  + ER  +
Sbjct:   47 FQEQIGMPDEEDMRNWSHHYSTDSVDDPIFRAAMKGC--SAVSFVFGLEVTWSLIQQRQQEEEERKAL 112
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A7S1BT35_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BT35_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.870e-20
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTER 216
            FQEQ+GMP+EED+ +WSHHH+TDTVDDPVFRAA+ G     VSFVFGLEVTW L+Q +E    ER
Sbjct:  212 FQEQIGMPEEEDMRNWSHHHSTDTVDDPVFRAAMRGFNS--VSFVFGLEVTWSLIQEKEQEQEER 274
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A7S1BT52_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BT52_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.390e-20
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTER 216
            FQEQ+GMP+EED+ +WSHHH+TDTVDDPVFRAA+ G     VSFVFGLEVTW L+Q +E    ER
Sbjct:  937 FQEQIGMPEEEDMRNWSHHHSTDTVDDPVFRAAMRGFNS--VSFVFGLEVTWSLIQEKEQEQEER 999
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A448YY45_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY45_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.580e-19
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTERATI 225
            +QEQ+GMP EE++ SWSHHHTTDTVDDP+FRAA+ G  DS VSFVFGLEVTWG +Q ++  + +RA +
Sbjct:  978 YQEQIGMPDEENMRSWSHHHTTDTVDDPIFRAAMRGY-DS-VSFVFGLEVTWGKIQQRQQEEEDRAAM 1043
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A7S4APF4_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APF4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.500e-19
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTERATI 225
            +QEQ+GMP EE++ +WSHHHTTDTVDDP+FRAA+ G  DS VSFVFGLEVTWG +Q ++  + +RA +
Sbjct:  987 YQEQIGMPDEENMRAWSHHHTTDTVDDPIFRAAMRGY-DS-VSFVFGLEVTWGKIQQRQQEEEDRAAM 1052
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: K0TNR5_THAOC (Bromo domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNR5_THAOC)

HSP 1 Score: 91.7 bits (226), Expect = 6.720e-19
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTERATIVA 231
            +QEQ+GMP EE++  WSHHH+TDTVDDP+FRAA+ G  DS VSFVFGLEVTW L+Q ++  + ERA + A
Sbjct:  222 YQEQIGMPDEENMRHWSHHHSTDTVDDPIFRAAMRGY-DS-VSFVFGLEVTWSLIQQRQQEEEERAALEA 289
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A1Z5KRM6_FISSO (DNA repair and recombination protein RAD54 and RAD54-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRM6_FISSO)

HSP 1 Score: 91.7 bits (226), Expect = 8.910e-19
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTER 216
            +QEQ+GMP EE++ +WSHHHTTDTVDDP+FRAA+ G     VSFVFGLEVTW L+Q ++  + ER
Sbjct:  910 YQEQIGMPDEENMRNWSHHHTTDTVDDPIFRAAMRGC--DAVSFVFGLEVTWSLIQERQQEEEER 972
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A6T8PAH4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8PAH4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-18
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQELADTERATI 225
            FQEQLGMP EE++ SWSHH++T+TVDDP+FRAA+ G     VSFVFGLEVTW L+Q + + + E+A +
Sbjct:   77 FQEQLGMPDEENMRSWSHHYSTNTVDDPIFRAAMKGY--DTVSFVFGLEVTWSLIQQRAMEEEEKAAM 142
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BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Match: A0A7S2PQ74_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PQ74_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.200e-18
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   22 FQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVSFVFGLEVTWGLLQAQE 198
            +QEQLGMP EE++ SWSHHHTTDTVDDP+FRAA+ G     VSFVFGLEVTW L+Q ++
Sbjct:  960 YQEQLGMPDEENMRSWSHHHTTDTVDDPIFRAAMHGY--DAVSFVFGLEVTWSLIQERQ 1016
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2111.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSB9_9PHAE1.230e-2571.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1DCT5_CYCTE7.610e-2160.29Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S1BT35_9STRA1.870e-2067.69Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BT52_9STRA7.390e-2067.69Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A448YY45_9STRA2.580e-1964.71Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4APF4_9STRA6.500e-1963.24Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
K0TNR5_THAOC6.720e-1962.86Bromo domain-containing protein n=1 Tax=Thalassios... [more]
A0A1Z5KRM6_FISSO8.910e-1963.08DNA repair and recombination protein RAD54 and RAD... [more]
A0A6T8PAH4_9STRA1.820e-1860.29Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2PQ74_9STRA4.200e-1869.49Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2111contigP-wetherbeei_contig2111:2641..3067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYB3
Preferred nameRAD54L
PFAMsHelicase_C,Rad54_N,SNF2_N
Model size428
Max annot lvl2759|Eukaryota
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue2.02e-26
EggNOG OGsCOG0553@1|root,KOG0390@2759|Eukaryota
DescriptionDNA repair and recombination protein
Cds size426
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.7493865-CDS-P-wetherbeei_contig2111:2640..30661683186216.7493865-CDS-P-wetherbeei_contig2111:2640..3066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2111 2641..3066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2111.2.1prot_P-wetherbeei_contig2111.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2111 2641..3066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2111.2.1

>prot_P-wetherbeei_contig2111.2.1 ID=prot_P-wetherbeei_contig2111.2.1|Name=mRNA_P-wetherbeei_contig2111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
GDGAPQRFQEQLGMPKEEDLNSWSHHHTTDTVDDPVFRAALAGTGDSLVS
FVFGLEVTWGLLQAQELADTERATIVAAATAEAAATAAGAKKGGDAASGV
AAETEDAAVATPAAAGAAGKAANGKPRARTPAAGDAAVARAA
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mRNA from alignment at P-wetherbeei_contig2111:2641..3067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2111.2.1 ID=mRNA_P-wetherbeei_contig2111.2.1|Name=mRNA_P-wetherbeei_contig2111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=427bp|location=Sequence derived from alignment at P-wetherbeei_contig2111:2641..3067+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGGGGCGCCGCAGCGCTTCCAGGAGCAGCTGGGCATGCCGAAGGA
AGAAGATCTGAACTCGTGGAGCCACCACCACACAACCGACACAGTGGACG
ACCCCGTCTTCCGGGCGGCGCTGGCAGGCACAGGCGACTCGCTCGTCAGC
TTCGTCTTCGGGCTCGAAGTGACGTGGGGTCTGCTGCAGGCGCAGGAGCT
GGCCGACACCGAGCGCGCCACCATCGTCGCTGCTGCCACGGCTGAGGCAG
CTGCGACGGCGGCGGGGGCGAAGAAGGGAGGTGATGCGGCAAGCGGTGTT
GCAGCTGAGACTGAGGACGCAGCGGTGGCGACGCCGGCAGCAGCGGGGGC
GGCGGGGAAGGCGGCGAACGGCAAGCCGCGGGCGAGGACGCCGGCAGCCG
GCGATGCGGCTGTGGCGCGCGCGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2111:2641..3067+

>mRNA_P-wetherbeei_contig2111.2.1 ID=mRNA_P-wetherbeei_contig2111.2.1|Name=mRNA_P-wetherbeei_contig2111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig2111:2641..3067+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGGGGCGCCGCAGCGCTTCCAGGAGCAGCTGGGCATGCCGAAGGA
AGAAGATCTGAACTCGTGGAGCCACCACCACACAACCGACACAGTGGACG
ACCCCGTCTTCCGGGCGGCGCTGGCAGGCACAGGCGACTCGCTCGTCAGC
TTCGTCTTCGGGCTCGAAGTGACGTGGGGTCTGCTGCAGGCGCAGGAGCT
GGCCGACACCGAGCGCGCCACCATCGTCGCTGCTGCCACGGCTGAGGCAG
CTGCGACGGCGGCGGGGGCGAAGAAGGGAGGTGATGCGGCAAGCGGTGTT
GCAGCTGAGACTGAGGACGCAGCGGTGGCGACGCCGGCAGCAGCGGGGGC
GGCGGGGAAGGCGGCGAACGGCAAGCCGCGGGCGAGGACGCCGGCAGCCG
GCGATGCGGCTGTGGCGCGCGCGGCG
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