mRNA_P-wetherbeei_contig2111.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2111.1.1
Unique NamemRNA_P-wetherbeei_contig2111.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 388 bits (996), Expect = 3.090e-121
Identity = 209/316 (66.14%), Postives = 239/316 (75.63%), Query Frame = 1 
Query:    4 GKQTNILSSIGALQKLCNHPSLL------QGSRGMEEVAAYLPS-----------------MGQDAKRQRSS-------HPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRCRRDEALRAARDDAEEAERLAVPRQLERCGALLAELRVL 861
            GKQTNILSSIGA+QKLCNHP LL      + S G  E+A+ LP+                  G     +RSS        P+WSGK+ TLFRL+R M+  GDDRIVVVSN+T +       LDLIG++CREN WP+VRLDGSTGVSKRQK+V+ FN+P  +SF FLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLS+KDLK+LF+L +GTPSDTHDKL C+RC  DEA++A +D  E   R A+P+QL  C  LL+EL  L
Sbjct:  427 GKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSGGHAEIASMLPAETSSSAALAGGVGGRGMSGGGGFGRRSSGGMQKGVFPEWSGKMETLFRLMREMRNTGDDRIVVVSNFTSS-------LDLIGSMCRENSWPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSSKDLKDLFKLYEGTPSDTHDKLRCKRCNIDEAVQAVKDIDESGLRRALPQQLALCEELLSELSAL 735
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 353 bits (907), Expect = 2.920e-116
Identity = 180/266 (67.67%), Postives = 210/266 (78.95%), Query Frame = 1 
Query:    4 GKQTNILSSIGALQKLCNHPSLLQGS--------RGM----------EEVAAYLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRC 747
            GKQTNILSSIG++QKLCNHP LL+          RG           EEVA+ LP+   ++ R RS HP+WSGK+ TLFRL++ M++ GDDRIVVVSNYT A       LDLIG +C+EN WPY RLDGSTG  KR+ +V  FND  + +F FLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQ+KRC+VYRF+STGTIEEK+FQRQLSKEGLQ++V+D+ EVNSLS+KDL+NLF+LRDGTP DTHDKL C RC
Sbjct:  273 GKQTNILSSIGSMQKLCNHPKLLEAGAAAAAGAKRGAGGPSMAEHLAEEVASMLPA---ESGRGRSVHPEWSGKMETLFRLMQGMRKSGDDRIVVVSNYTSA-------LDLIGRMCQENHWPYCRLDGSTGGKKRKLMVAQFNDQKTDNFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQRKRCYVYRFISTGTIEEKIFQRQLSKEGLQSVVEDQAEVNSLSSKDLRNLFKLRDGTPCDTHDKLRCGRC 528
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: B8CBU1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBU1_THAPS)

HSP 1 Score: 327 bits (838), Expect = 7.180e-106
Identity = 165/255 (64.71%), Postives = 192/255 (75.29%), Query Frame = 1 
Query:    4 GKQTNILSSIGALQKLCNHPSLLQGSR-----GMEEVAAYLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGD--DRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRC 747
            GKQ N L SI  L KLCNHPSL+   +     G + +A ++P       R     P+ SGK+  LFRL+R M++ G+  D+IV+VSNYTQ        LDLIG +CREN W + RLDGS  + KRQK+ D FNDP S    FLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDK++VNSLSTKDLKNLF+LR GTPSDTHDKL C RC
Sbjct:  296 GKQVNCLGSIQMLMKLCNHPSLVVNEKSSAAPGADGIAKFMPYEAIRGDRNAPVMPELSGKMFVLFRLMREMRRPGNGNDKIVIVSNYTQT-------LDLIGRMCRENNWGFCRLDGSISMKKRQKMCDEFNDPSSSLVAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVVDDKDQVNSLSTKDLKNLFKLRSGTPSDTHDKLKCERC 543
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: K0SII4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SII4_THAOC)

HSP 1 Score: 322 bits (824), Expect = 1.760e-104
Identity = 172/316 (54.43%), Postives = 207/316 (65.51%), Query Frame = 1 
Query:    1 QGKQTNILSSIGALQKLCNHPSLL------------------------------QGSRGMEEVAAYLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGD--DRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRCRRDEALRAARDDAEEAERLAVPRQLERCGALLAEL 852
            +GKQ N L SI  L KLCNHPSL+                                + G   +A ++P       R     P+ SGK+  L+RL+R M++ G+  D+IV+VSNYTQ        LDLIG +CREN W + RLDGS  + KRQK+ D FNDP S    FLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDKE+VN+LSTKDL+NLF+LR GTPSDTHDKL C RC+         DDA+      +P++L  C  LL +L
Sbjct:   38 EGKQVNCLGSIQMLMKLCNHPSLVVDGDSSRNNNIGGRSGRNKKKVCYAEEEKSSAAPGANGIAKFMPYEAMGGGRNAPVMPELSGKMFVLWRLMREMRKPGNGGDKIVIVSNYTQT-------LDLIGRMCRENSWGFCRLDGSISMKKRQKMCDEFNDPSSSLIAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFMATGTVEEKIFQRQLSKEGLQSVVDDKEQVNALSTKDLRNLFKLRTGTPSDTHDKLKCERCK------IIVDDADAQAAKVLPKKLTACRELLEQL 340
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: W4GPJ1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GPJ1_9STRA)

HSP 1 Score: 334 bits (856), Expect = 4.100e-104
Identity = 169/254 (66.54%), Postives = 198/254 (77.95%), Query Frame = 1 
Query:   13 TNILSSIGALQKLCNHPSLL--QGSRGMEEVAA-------YLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRC 747
            T++LSSI AL+KLCNHPSL+  Q + G  ++AA       YLP  G    RQRS HP+WSGK   L RL++ M++  DDRIV+VSNYTQ        LD++  LCRE  +P VRLDGST   KR+ LVD+FNDP S SF FLLSSKAGGCG+NLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV+TGT+EEK+FQRQLSKEGLQ+IVDDKEEVNSLSTKDLK LF   +GTPSDTHD+L C RC
Sbjct:  458 THVLSSITALKKLCNHPSLIFEQSANGQTKIAAGFEDCMAYLPEQGH---RQRSCHPEWSGKFQVLDRLMQVMRRKTDDRIVIVSNYTQT-------LDVVSALCRERNFPAVRLDGSTSAKKRKNLVDVFNDPKSNSFAFLLSSKAGGCGINLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIVDDKEEVNSLSTKDLKRLFVFMEGTPSDTHDQLKCLRC 701
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: A0A024TUM9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUM9_9STRA)

HSP 1 Score: 333 bits (855), Expect = 6.720e-104
Identity = 167/255 (65.49%), Postives = 198/255 (77.65%), Query Frame = 1 
Query:   13 TNILSSIGALQKLCNHPSLL---------QGSRGMEEVAAYLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRCR 750
            T++LSSI AL+KLCNHPSL+         + + G E+  AYLP  G    R RS HP+WSGK   L RL++ M++  DDRIV+VSNYTQ        LD++  LCRE  +P VRLDGST   KR+ LVD+FNDP + SF FLLSSKAGGCGLNLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV+TGT+EEK+FQRQLSKEGLQ+IVDDKEEVNSLSTKDLK LF   +GTPSDTHD+L C+RC+
Sbjct:  455 THVLSSITALKKLCNHPSLIIEQQASGQTKVAAGFEDCMAYLPEQGH---RNRSCHPEWSGKFQVLDRLMQVMRRKTDDRIVIVSNYTQT-------LDVVSALCRERNFPSVRLDGSTSAKKRKSLVDVFNDPKTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIVDDKEEVNSLSTKDLKRLFVFMEGTPSDTHDQLKCQRCK 699
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: A0A485KVK0_9STRA (Aste57867_12445 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVK0_9STRA)

HSP 1 Score: 330 bits (847), Expect = 8.160e-103
Identity = 170/254 (66.93%), Postives = 196/254 (77.17%), Query Frame = 1 
Query:   13 TNILSSIGALQKLCNHPSLL--QGSRG-------MEEVAAYLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRC 747
            ++ILSSI AL+KLCNHPSL+  Q S G        EE   YLP  GQ   R RS HP+WSGK   L RL++ M++   DRIV+VSNYTQ        LD++  LCRE  +P VRLDGST  +KR+KLVD+FNDP S SF FLLSSKAGGCGLNLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV+TGT+EEK+FQRQLSKEGLQ+IVDDKEEVNSLSTKDLK LF   + TPSDTHD+L C RC
Sbjct:  461 SHILSSITALKKLCNHPSLIFEQNSSGNTKIAPGFEECIQYLPEQGQ---RHRSCHPEWSGKFQVLDRLMQVMRRKTTDRIVIVSNYTQT-------LDVVSTLCRERNFPSVRLDGSTSANKRKKLVDVFNDPKSNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIVDDKEEVNSLSTKDLKRLFVFMEETPSDTHDQLKCSRC 704
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: A0A067CTJ9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTJ9_SAPPC)

HSP 1 Score: 326 bits (835), Expect = 2.390e-101
Identity = 168/255 (65.88%), Postives = 194/255 (76.08%), Query Frame = 1 
Query:    7 KQTNILSSIGALQKLCNHPSLLQG--------SRGMEEVAAYLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRC 747
            K + IL SI AL+KLCNHP+L+          + G EE AA+LP    D  R RS HP+WSGK   L +L+  M++   DRIV+VSNYTQ        LD+I  LCRE G P VRLDGST  SKR+KLVD+FNDP + SF FLLSSKAGGCGLNLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV+TGT+EEK+FQRQLSKEGLQ+IVDDKEEVNSLSTKDLK LF   + T SDTHD+L CRRC
Sbjct:  446 KSSRILPSITALKKLCNHPNLIIDMSNGKTTIAPGFEECAAFLP---HDDHRHRSCHPEWSGKFQVLDKLMHEMRKKTTDRIVIVSNYTQT-------LDVITALCRERGLPAVRLDGSTSASKRKKLVDVFNDPKTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIVDDKEEVNSLSTKDLKKLFVFMENTDSDTHDQLKCRRC 690
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: A0A6G0XKV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKV7_9STRA)

HSP 1 Score: 325 bits (833), Expect = 7.450e-101
Identity = 168/254 (66.14%), Postives = 193/254 (75.98%), Query Frame = 1 
Query:   13 TNILSSIGALQKLCNHPSLL---QGSRGM------EEVAAYLPSMGQDAKRQRSSHPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRC 747
            ++ILSSI AL+KLCNHPSL+   Q   GM      EE   YLP  G    R+RS HP+WSGK   L RL++ M++  DDRIV+VSNYTQ        LD++  LCRE   P VRLDGST   KR+ LVD FNDP + SF FLLSSKAGGCGLNLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV+TGT+EEK+FQRQLSKEGLQ+IVDDKEEVNSLSTKDLK LF   + TPSDTHD+L C RC
Sbjct:  457 SHILSSITALKKLCNHPSLIFEQQSGGGMKVAPGFEECVVYLPEQGY---RERSCHPEWSGKFLVLDRLMQTMRRKTDDRIVIVSNYTQT-------LDVVSALCRERNLPAVRLDGSTSAKKRKNLVDTFNDPKTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIVDDKEEVNSLSTKDLKRLFVFMEETPSDTHDQLKCSRC 700
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BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Match: A0A7S2KDU5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDU5_9STRA)

HSP 1 Score: 325 bits (834), Expect = 8.440e-101
Identity = 174/303 (57.43%), Postives = 213/303 (70.30%), Query Frame = 1 
Query:    4 GKQTNILSSIGALQKLCNHPSLLQ---------GSRGMEEV--AAYLPSM---GQDA-------KRQRSSHPDWSGKLHTLFRLLRAMQQMGD--DRIVVVSNYTQASDRDGDGLDLIGNLCRENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRCRRDEALRAARDDAEEAERLAVPRQLERCGALL 843
            GKQ N LSSI  L KLCNHP L+          G RG +++  A   PS    G D              HP+WSGK+  L+RL+  M++ G+  D+IV++SNYTQ        LDLIG +C+EN W   RLDGS G+ KRQ +VD FNDP S    FLLSSKAGGCG+NLIGGNRLVLFDPDWNPAVDKQAAAR WR+GQKKRCF YRF+++GT+EEK+FQRQLSKEGLQ+IVDDKE+VN+LSTKDL+ LF+LR+ TPSDTHDKL C+RC+        +D+AEE +RL +P++L  C  LL
Sbjct:  217 GKQQNCLSSIQMLMKLCNHPKLVVEEDTSASRGGRRGNKKICYAEDAPSSAAPGADGISKFLPYSSSNGIHPEWSGKMFVLYRLMYEMRRPGNGNDKIVIISNYTQT-------LDLIGKMCKENNWKSCRLDGSVGMKKRQAMVDEFNDPTSSLVAFLLSSKAGGCGINLIGGNRLVLFDPDWNPAVDKQAAARCWREGQKKRCFTYRFLASGTVEEKIFQRQLSKEGLQSIVDDKEQVNALSTKDLQKLFKLREDTPSDTHDKLNCQRCK------LTKDNAEEMDRLTLPKRLAACKVLL 506
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2111.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSB9_9PHAE3.090e-12166.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHF7_9STRA2.920e-11667.67SNF2 family N-terminal domain-containing protein n... [more]
B8CBU1_THAPS7.180e-10664.71Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0SII4_THAOC1.760e-10454.43Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
W4GPJ1_9STRA4.100e-10466.54Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A024TUM9_9STRA6.720e-10465.49Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KVK0_9STRA8.160e-10366.93Aste57867_12445 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CTJ9_SAPPC2.390e-10165.88Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6G0XKV7_9STRA7.450e-10166.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2KDU5_9STRA8.440e-10157.43Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2111contigP-wetherbeei_contig2111:276..1875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYB3
Preferred nameRAD54L
PFAMsHelicase_C,Rad54_N,SNF2_N
Model size861
Max annot lvl2759|Eukaryota
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons4
Evalue1.19e-121
EggNOG OGsCOG0553@1|root,KOG0390@2759|Eukaryota
DescriptionDNA repair and recombination protein
Cds size861
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.645903-CDS-P-wetherbeei_contig2111:275..5501683186216.645903-CDS-P-wetherbeei_contig2111:275..550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2111 276..550 +
1683186216.6602783-CDS-P-wetherbeei_contig2111:852..10841683186216.6602783-CDS-P-wetherbeei_contig2111:852..1084Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2111 853..1084 +
1683186216.6741164-CDS-P-wetherbeei_contig2111:1365..14491683186216.6741164-CDS-P-wetherbeei_contig2111:1365..1449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2111 1366..1449 +
1683186216.6847987-CDS-P-wetherbeei_contig2111:1605..18751683186216.6847987-CDS-P-wetherbeei_contig2111:1605..1875Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2111 1606..1875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2111.1.1prot_P-wetherbeei_contig2111.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2111 276..1875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2111.1.1

>prot_P-wetherbeei_contig2111.1.1 ID=prot_P-wetherbeei_contig2111.1.1|Name=mRNA_P-wetherbeei_contig2111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=287bp
QGKQTNILSSIGALQKLCNHPSLLQGSRGMEEVAAYLPSMGQDAKRQRSS
HPDWSGKLHTLFRLLRAMQQMGDDRIVVVSNYTQASDRDGDGLDLIGNLC
RENGWPYVRLDGSTGVSKRQKLVDMFNDPLSKSFVFLLSSKAGGCGLNLI
GGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQ
RQLSKEGLQNIVDDKEEVNSLSTKDLKNLFRLRDGTPSDTHDKLLCRRCR
RDEALRAARDDAEEAERLAVPRQLERCGALLAELRVL
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mRNA from alignment at P-wetherbeei_contig2111:276..1875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2111.1.1 ID=mRNA_P-wetherbeei_contig2111.1.1|Name=mRNA_P-wetherbeei_contig2111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1600bp|location=Sequence derived from alignment at P-wetherbeei_contig2111:276..1875+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCAAGCAGACAAACATCCTGTCGAGCATCGGCGCCCTCCAGAAACT
CTGCAACCACCCATCGCTGCTGCAGGGCTCCCGCGGCATGGAGGAAGTAG
CGGCGTACCTGCCGTCGATGGGGCAGGACGCCAAGCGGCAGCGGTCGTCT
CATCCAGATTGGTCCGGCAAGCTGCACACGCTGTTCCGGCTGCTACGTGC
CATGCAGCAGATGGGGGACGACCGCATCGTCGTCGTCTCCAACTACACGC
AGGCGAGTGACAGAGACGGAGATGGGTTCCTGTTGTGGGTTTTTGGTGGT
TATGCGGATTTGATGGTGGCGGTGGCCGCGGCGGCGGCGGCGCCAGCGGC
TGCTGCTGTCGCCGTCGGCAGAGCAATGGTGGTGGTGGCGATGATGGTGT
TATAGCAGTGGCGACGGCGGTGGTGGCGTATTGTTATTGCCCTTTTATCG
ACTCCCACTGGTTTCACCTCGCTTTCCGTCTGTCCACACGCGTGCACACC
CTGGACGAGCCTTCCGCTGATCGCCGACCTTTTCGCTTGCCACCCAAAAC
GGGGGCGTACGCTTTCCATTTGCAGAGCCTGGACCTGATCGGCAACCTGT
GCCGCGAGAACGGCTGGCCATACGTGCGGCTGGATGGCTCGACGGGCGTG
TCGAAGCGGCAGAAGCTGGTGGATATGTTCAACGACCCGCTCTCCAAGTC
GTTCGTCTTCCTGCTGTCGTCCAAGGCCGGTGGCTGCGGCCTTAACCTCA
TCGGGGGCAACCGCCTTGTCCTCTTCGACCCAGATTGGAACCCGGCCGTC
GACAAGCAGGTGTGGCGGTGCGGTTGCGGCGGTACGGTTTGCGATAGTGG
TGCAGGTGTGACGCTGCAGTTGTGGCGGTGCGGTTTGCGATAGTGGTGAT
GCTGGTGTTCATGGTTGATGCGGTAGTGGTGATGCTGCTTCGTGCCGCTG
CCGCTGCTTTCGGCGTTGCAGCTGCTGTGCTGCCGCTTCTCGCCTGTCAT
TTCCATTTGCAGTTGCGTAGATGTGCGTGCTAATCGTCTTTTGGTGCCCA
CCAACCGCTTCTCGCCTTGCTGGATCGTCATGCCGTGTAGGCGGCAGCGC
GGGTCTGGCGGGACGGGCAGAAGAAACGCTGCTTCGTCTACCGCTTCGTG
TCCACCGGCACCATCGAAGAGAAGGTAAGGCCGCAGCGAGCCATGTATTC
TGTCTCGAATCGCTGTCCAACTTTATTCGGCCGCGTACCGCCTTGCCAGA
TCTCATCCTTTTCCTTTCTACCTTTCCTTCCTGCCACTCCTTTCGCGCAA
TTTCTTCCCCTCCAACCGGCCACTCCGCAGGTGTTCCAGCGGCAGTTGAG
CAAGGAGGGGCTACAAAACATTGTCGACGACAAAGAAGAGGTCAATTCGC
TCTCCACCAAGGACCTGAAGAATCTCTTCCGCCTGCGGGACGGCACCCCG
TCCGACACACATGACAAGCTGCTTTGCCGCCGCTGCCGCCGCGACGAGGC
ACTGCGCGCGGCTCGCGATGACGCCGAGGAGGCCGAGCGGCTGGCGGTGC
CGCGGCAGCTGGAGCGCTGTGGCGCGCTGCTGGCAGAGCTGCGGGTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2111:276..1875+

>mRNA_P-wetherbeei_contig2111.1.1 ID=mRNA_P-wetherbeei_contig2111.1.1|Name=mRNA_P-wetherbeei_contig2111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig2111:276..1875+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCAAGCAGACAAACATCCTGTCGAGCATCGGCGCCCTCCAGAAACT
CTGCAACCACCCATCGCTGCTGCAGGGCTCCCGCGGCATGGAGGAAGTAG
CGGCGTACCTGCCGTCGATGGGGCAGGACGCCAAGCGGCAGCGGTCGTCT
CATCCAGATTGGTCCGGCAAGCTGCACACGCTGTTCCGGCTGCTACGTGC
CATGCAGCAGATGGGGGACGACCGCATCGTCGTCGTCTCCAACTACACGC
AGGCGAGTGACAGAGACGGAGATGGCCTGGACCTGATCGGCAACCTGTGC
CGCGAGAACGGCTGGCCATACGTGCGGCTGGATGGCTCGACGGGCGTGTC
GAAGCGGCAGAAGCTGGTGGATATGTTCAACGACCCGCTCTCCAAGTCGT
TCGTCTTCCTGCTGTCGTCCAAGGCCGGTGGCTGCGGCCTTAACCTCATC
GGGGGCAACCGCCTTGTCCTCTTCGACCCAGATTGGAACCCGGCCGTCGA
CAAGCAGGCGGCAGCGCGGGTCTGGCGGGACGGGCAGAAGAAACGCTGCT
TCGTCTACCGCTTCGTGTCCACCGGCACCATCGAAGAGAAGGTGTTCCAG
CGGCAGTTGAGCAAGGAGGGGCTACAAAACATTGTCGACGACAAAGAAGA
GGTCAATTCGCTCTCCACCAAGGACCTGAAGAATCTCTTCCGCCTGCGGG
ACGGCACCCCGTCCGACACACATGACAAGCTGCTTTGCCGCCGCTGCCGC
CGCGACGAGGCACTGCGCGCGGCTCGCGATGACGCCGAGGAGGCCGAGCG
GCTGGCGGTGCCGCGGCAGCTGGAGCGCTGTGGCGCGCTGCTGGCAGAGC
TGCGGGTGCTG
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