mRNA_P-wetherbeei_contig2109.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2109.1.1
Unique NamemRNA_P-wetherbeei_contig2109.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2109.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2109contigP-wetherbeei_contig2109:242..1808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size753
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.2001715-UTR-P-wetherbeei_contig2109:241..3261683186216.2001715-UTR-P-wetherbeei_contig2109:241..326Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2109 242..326 +
1683186216.2122347-UTR-P-wetherbeei_contig2109:1140..13991683186216.2122347-UTR-P-wetherbeei_contig2109:1140..1399Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2109 1141..1399 +
1683186216.231617-UTR-P-wetherbeei_contig2109:1789..18081683186216.231617-UTR-P-wetherbeei_contig2109:1789..1808Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2109 1790..1808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.221959-CDS-P-wetherbeei_contig2109:1399..17891683186216.221959-CDS-P-wetherbeei_contig2109:1399..1789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2109 1400..1789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2109.1.1prot_P-wetherbeei_contig2109.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2109 1400..1789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2109.1.1

>prot_P-wetherbeei_contig2109.1.1 ID=prot_P-wetherbeei_contig2109.1.1|Name=mRNA_P-wetherbeei_contig2109.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MARWLTGGMADGALPPVCTSVHGLKIRLSHRGSHGGLRFGFGRLSVDATT
VAAAVTAASRAATRTAWIAASRPEVALVTFAESTLRTSKADFVVPDTTLL
LVWDPLFQLGAVLQRRACGRLRDAQTRIK*
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mRNA from alignment at P-wetherbeei_contig2109:242..1808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2109.1.1 ID=mRNA_P-wetherbeei_contig2109.1.1|Name=mRNA_P-wetherbeei_contig2109.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1567bp|location=Sequence derived from alignment at P-wetherbeei_contig2109:242..1808+ (Phaeothamnion wetherbeei SAG_119_79)
TCTTATGCTCTCTTTGCGGCATTGCAGGCTCCGCTGCGTGCCTTGTGAAG
GGAGTGGCTGCGAGGCGAGTCGGGGGCGCGGCAAGGTGAGTCACCCCCTC
TTTGGCGTCCGCCTTTGCGTCTACCAGCGGTCTTGTGTTGCCCGCGGTCT
CCTGCGCCTTTCCTCCCCGGCCTCGGTTGCCTCGGTTCTTGCATTCCCTT
CCCCTGGTTTTCTGTTCTGACGAAATCTCCCCCCTCTGATGCATTCGTAT
TTCTTTTTAATCTTCTCATAAGATCGCTGCTGGCTTAATTGTACCTATTC
GTAGGTGTTGCTGTTTATTCTCAAGAGTTCGCAAAATTCTCACTGCATCA
TACATCATTTCTGATTCATATCAGTTTTGGAGCATTCTTAAATCGCTGTA
GAGTAGTTTGGAATAGTTGGCGTTCTTTGAGCAGCTCTCCCGGATTGACG
AACAGAAATTGTTCAGGCTGGCTGATGCACTTCCTCAAGGCCGCGCCGCT
TTAGCGACGATGATCGTATTGCGGTCGCGGAGCCCAACGTGGCCCGAAAA
ACGGCTCGCCTAAAGCGATGCCATCTCTCTCGCCACTCCGCGGCTCTCGC
CGCGCTCTCAATAGGCTTTGAAATTCATACCGGATGAAAGAGCTGTTTCT
CGTGTCGTCTTTCGAGTTTTCGGCGTGTCATCCCGCGGTTATTACCGCCC
AACACGATACATGAGAAGGAGCCGGAGAGAGGTCCGAGACGTAACTGTTG
GCAGTTGCCATCCGCGCCCCTTGTTGGCATTTGCCATGCCGTTTCTATGG
TTTGCAGAACTGCGGGTCCCCCAGACTGAACCGCGTTCCGCCCTCTGGAC
ACCGCAAACGCAACTTTGCCTGGAAACACATGTCATTTGCTCTTTGCAGG
TGCTGTGCTAGCAAGCAGCGGGCCTGCACATTAGTAACAAGAGGGATGGG
TGCAGCGGAGCAGCCAGAAGAGCCGGCAGTGTTCCGCTACGGCGACACGC
GCTTCCCGTCCGGCTGTCGGCCGCGGTCTGCTGCGGCTGGTTTTACCTGT
GGCAGTTCGGTTGCCAAGGGGGCATCAGCAGCGGCTGGCAGGGGCATCGG
GTGACACTGATGGCGGCGGCACTGGCTGTGGCGGCACTGGCTGTGGCTGC
GCTGACGGATGGCGCGTTGGCTTACCGGCGGCATGGCGGACGGTGCGCTG
CCACCTGTCTGTACAAGCGTCCACGGCCTCAAGATTCGTCTCTCTCATAG
GGGAAGCCATGGAGGGCTTCGCTTTGGCTTTGGCCGCCTCTCCGTCGACG
CGACGACGGTGGCGGCGGCAGTGACGGCAGCGTCGCGCGCGGCGACTCGA
ACAGCGTGGATCGCCGCGTCGAGGCCTGAGGTCGCATTGGTGACATTCGC
AGAGAGCACTCTTCGAACCAGTAAAGCAGATTTTGTGGTTCCTGATACCA
CTCTGCTTCTTGTGTGGGACCCGTTGTTTCAGCTTGGTGCGGTGCTTCAA
AGGAGGGCCTGCGGGCGGCTGAGAGATGCGCAGACACGCATAAAGTAACG
GCATCCGGCATTTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2109:242..1808+

>mRNA_P-wetherbeei_contig2109.1.1 ID=mRNA_P-wetherbeei_contig2109.1.1|Name=mRNA_P-wetherbeei_contig2109.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig2109:242..1808+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGTTGGCTTACCGGCGGCATGGCGGACGGTGCGCTGCCACCTGT
CTGTACAAGCGTCCACGGCCTCAAGATTCGTCTCTCTCATAGGGGAAGCC
ATGGAGGGCTTCGCTTTGGCTTTGGCCGCCTCTCCGTCGACGCGACGACG
GTGGCGGCGGCAGTGACGGCAGCGTCGCGCGCGGCGACTCGAACAGCGTG
GATCGCCGCGTCGAGGCCTGAGGTCGCATTGGTGACATTCGCAGAGAGCA
CTCTTCGAACCAGTAAAGCAGATTTTGTGGTTCCTGATACCACTCTGCTT
CTTGTGTGGGACCCGTTGTTTCAGCTTGGTGCGGTGCTTCAAAGGAGGGC
CTGCGGGCGGCTGAGAGATGCGCAGACACGCATAAAGTAA
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