mRNA_P-wetherbeei_contig21083.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21083.2.1
Unique NamemRNA_P-wetherbeei_contig21083.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: UPI00198B52DE (Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha n=1 Tax=Aeromicrobium sp. TaxID=1871063 RepID=UPI00198B52DE)

HSP 1 Score: 300 bits (768), Expect = 4.000e-97
Identity = 160/204 (78.43%), Postives = 180/204 (88.24%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPAAKKGHGHGGGA-PMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            Q+STLY TNLFRLAEELCKTKDGVINVNM+DDAIRGLT++K+GA+TWPAPP KL A PA  K A A+  AKK HG G  + PM+ GKL +MFA+AA  FWF+GANAP AFLGHFTVFVLACFVGYMVVWNVTP+LHTPLMSVTNAISSIIVIGALVQIAPPA+A  G+ RPD++IRW+AV GIALTA+NMFGGFAVT+RMLAMF
Sbjct:  103 QASTLYGTNLFRLAEELCKTKDGVINVNMDDDAIRGLTIVKDGAVTWPAPPPKLPAVPAP-KSADAI-IAKKSHGRGAASEPMSSGKLTVMFAIAAALFWFVGANAPPAFLGHFTVFVLACFVGYMVVWNVTPSLHTPLMSVTNAISSIIVIGALVQIAPPAVA--GISRPDELIRWVAVVGIALTAVNMFGGFAVTRRMLAMF 302          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A142LLS0_9PROT (NAD(P) transhydrogenase subunit alpha n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A142LLS0_9PROT)

HSP 1 Score: 306 bits (785), Expect = 1.010e-96
Identity = 166/205 (80.98%), Postives = 184/205 (89.76%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAA-KPAVAVPAAKKGHGHGGGA-PMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            Q+STLY TNLFRLAEELCKTKDG+INVNMEDDAIRGLTVIK+GA+TWPAPP KL  PPA   KPA AV  AKK HGHG  + PM+GGKLA+MFA+AA  FWF+GANAP AFLGHFTVFVLACFVGYMVVWNVTP+LHTPLMSVTNAISSIIVIGALVQIAPPA+A  G+ RPD++IRW+A+ GIALTA+NMFGGFAVT+RMLAMF
Sbjct:  326 QASTLYGTNLFRLAEELCKTKDGMINVNMEDDAIRGLTVIKDGAVTWPAPPPKL--PPAPIPKPASAV-VAKKSHGHGAPSEPMSGGKLAVMFAIAAGLFWFVGANAPPAFLGHFTVFVLACFVGYMVVWNVTPSLHTPLMSVTNAISSIIVIGALVQIAPPAVA--GISRPDELIRWIALVGIALTAVNMFGGFAVTRRMLAMF 525          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: U4U2R7_DENPD (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4U2R7_DENPD)

HSP 1 Score: 314 bits (804), Expect = 2.080e-95
Identity = 186/365 (50.96%), Postives = 239/365 (65.48%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPAAKKGHGHGGGAPMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMFLAYIGATILFILSLGGLSNPETSRRGNLYGIIGMTIAVLATVLGPRVTAAGIPWIVGAMVAGGSIGLYLARTVQMTQMPELVAFMHSLVGLAAVVVGFASYVDPTSTLNLTSAEKAIHELEVYIGVFIGAVTLSGSVIAFGKLSGKISGKPLLLPARHWLNL 1095
            QSS LY TNL  L + LCK K+G I ++ +D  +RG+TV+K G ITWPAPPI+++A P AAK  V  P+AK         P +     I+ A+A V F ++   AP  FL HFTVF L+C VGY VVWNV+ ALHTPLM+VTNAIS IIV+GAL+QI                + +L+   + + +IN+FGGF VTQRML +              L GLS  ETSR+GN++GI GM IA++ T+LGP     G  WI+ AMV GG+IG+YLAR V+MTQMPELVA +HS VGLAAV+VGF SY+D    + +    + IH +EV++G+FIGAVT +GS++AFGKL G  S KPL LP RH LNL
Sbjct:  322 QSSQLYGTNLLNLLKLLCKEKNGEIVIDFDDTVVRGVTVVKSGEITWPAPPIQVSAQPQAAK--VEAPSAKTAA-----KPSSPWTKYIIMAIAVVLFGWLADVAPKEFLSHFTVFALSCVVGYYVVWNVSHALHTPLMAVTNAISGIIVVGALLQIGH-----------GGWVSFLSFVAVLIASINIFGGFTVTQRMLKI--------------LAGLSKHETSRQGNIFGITGMAIALIVTILGPDSGHTG--WIILAMVVGGAIGVYLARKVEMTQMPELVAILHSFVGLAAVLVGFNSYLD-RGAVPMEGVMENIHLVEVFLGIFIGAVTFTGSIVAFGKLRGIFSSKPLALPHRHKLNL 651          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A6S6Y3W9_9PROT (NAD(P) transhydrogenase subunit alpha n=2 Tax=Denitratisoma oestradiolicum TaxID=311182 RepID=A0A6S6Y3W9_9PROT)

HSP 1 Score: 303 bits (775), Expect = 3.560e-95
Identity = 164/204 (80.39%), Postives = 173/204 (84.80%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPA-AKKGHGHGGGAPMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            QSSTLY+TNLFRLAEELCKTKDGVINVNM+DDAIRGLTV+KEG ITWP P  KLAA P            AKKGHGH    PMA GKLAIMF+VA+  FWFIGANAP AFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSII IGALVQIAPP L +AG  RPD++IRWLA AGIALTAINMFGGFAVT+RMLAMF
Sbjct:  326 QSSTLYATNLFRLAEELCKTKDGVINVNMDDDAIRGLTVVKEGNITWPPPAPKLAAAPXXXXXXXXXXXXAKKGHGHRDHTPMAAGKLAIMFSVASALFWFIGANAPEAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIAIGALVQIAPPLLGNAGAGRPDELIRWLAFAGIALTAINMFGGFAVTRRMLAMF 529          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A1G8FRN8_9BURK (NAD(P) transhydrogenase subunit alpha n=1 Tax=Variovorax sp. OV700 TaxID=1882826 RepID=A0A1G8FRN8_9BURK)

HSP 1 Score: 303 bits (776), Expect = 4.490e-95
Identity = 164/204 (80.39%), Postives = 173/204 (84.80%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPAAKKGHGHGGGA-PMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            QSSTLY+TNLFRL+EELCKTKDG+INVNMEDDAIRGLTVIKEG+I+WP PP K AA PA  KPA A  A KK HGHG  + PMAG KLAI+F V+A  FWF+GANAPAAFL HFTVFVLACFVGYMVVWNV PALHTPLMSVTNAISSII IGALVQIAPP    A   RPDD IRWLA AGI LTAINMFGGFAVTQRMLAMF
Sbjct:  349 QSSTLYATNLFRLSEELCKTKDGIINVNMEDDAIRGLTVIKEGSISWPPPPPKQAAAPAQTKPAAAPVAVKKAHGHGAPSEPMAGNKLAILFGVSAALFWFVGANAPAAFLAHFTVFVLACFVGYMVVWNVKPALHTPLMSVTNAISSIIAIGALVQIAPPIAGAA--NRPDDWIRWLAAAGIVLTAINMFGGFAVTQRMLAMF 550          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A1G0CYQ6_9PROT (NAD(P) transhydrogenase subunit alpha n=7 Tax=Nitrosomonadales TaxID=32003 RepID=A0A1G0CYQ6_9PROT)

HSP 1 Score: 302 bits (773), Expect = 6.720e-95
Identity = 170/205 (82.93%), Postives = 176/205 (85.85%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVP-AAKKGHGHGG-GAPMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            QSSTLY+TNLFRL EELCKTKDG+INVNM+DDAIRGLTVI EG ITWPAP  KL A PA  KPA   P  A KGHGHGG G PMAGGKLAIMF VAAV F FIGA AP AFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSII IGALVQIAPP L  + + RPDD IRWLAVAGIALTA+NMFGGFAVTQRMLAMF
Sbjct:  326 QSSTLYATNLFRLIEELCKTKDGIINVNMDDDAIRGLTVINEGNITWPAPAPKLPAAPA--KPASTKPITAPKGHGHGGSGEPMAGGKLAIMFGVAAVLFLFIGAYAPPAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIAIGALVQIAPP-LMGSDVSRPDDWIRWLAVAGIALTAVNMFGGFAVTQRMLAMF 527          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A3E1RAD5_9BURK (NAD(P) transhydrogenase subunit alpha n=1 Tax=Rhodoferax lacus TaxID=2184758 RepID=A0A3E1RAD5_9BURK)

HSP 1 Score: 302 bits (774), Expect = 8.460e-95
Identity = 165/204 (80.88%), Postives = 173/204 (84.80%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPAAKKGHGHGGGA-PMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            QSSTLYSTNLFRL EELCKTKDGVINVNMEDDAIRGLTV K+G ITWPAP  K+AA PA AKPA A PAAKK HGHG  + PMAG KLA+MF V+A  FWF+GANAP AFL HFTVFVLACFVGYMVVWNV PALHTPLMSVTNAISSII IGALVQIAPP +  A   RPDD IRWLA  GI LT+INMFGGFAVTQRMLAMF
Sbjct:  347 QSSTLYSTNLFRLTEELCKTKDGVINVNMEDDAIRGLTVTKDGTITWPAPAPKVAAAPAVAKPAAA-PAAKKAHGHGAPSEPMAGNKLAVMFGVSAALFWFVGANAPQAFLAHFTVFVLACFVGYMVVWNVKPALHTPLMSVTNAISSIIAIGALVQIAPPLVVGAA-GRPDDWIRWLATGGIVLTSINMFGGFAVTQRMLAMF 548          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A4Y7B3H2_9BURK (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Ramlibacter sp. WS9 TaxID=1882741 RepID=A0A4Y7B3H2_9BURK)

HSP 1 Score: 302 bits (773), Expect = 1.520e-94
Identity = 167/210 (79.52%), Postives = 177/210 (84.29%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPAAKKGHGHGGGA-PMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPP------ALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            QSSTLYSTNLFRL EELCKTKDGVI+VNMEDDAIRGLTV+K+G+ITWPAPP+K AA PAA KPA     AKKGHGHG  + PMAG KLAIMF +AA  FWF+GANAP AFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSII IGALVQIAPP      A+A AG   P   IRWLAV GI LTA+NMFGGFAVTQRMLAMF
Sbjct:  350 QSSTLYSTNLFRLTEELCKTKDGVIDVNMEDDAIRGLTVVKDGSITWPAPPLKAAAVPAA-KPAAXXXXAKKGHGHGAPSEPMAGNKLAIMFGIAAALFWFVGANAPTAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIAIGALVQIAPPLGEGASAIAAAG-AGPGQWIRWLAVGGIVLTAVNMFGGFAVTQRMLAMF 557          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A7X6DGX3_9BURK (NAD(P) transhydrogenase subunit alpha n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A7X6DGX3_9BURK)

HSP 1 Score: 300 bits (768), Expect = 7.040e-94
Identity = 163/204 (79.90%), Postives = 172/204 (84.31%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPAAKKGHGHGGGA-PMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            QSSTLY+TNLFRL EELCKTKDGVI+VNMED+AIRGLTVIKEG+ITWP PP K+ A P AAK     P AKKGHGHG  + PM+G KLAIMF VAA  FWF+GANAPAAFL HFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSII IGALVQIAPP    AG   PD  IRWLAV GI LTA+NMFGGFAVTQRMLAMF
Sbjct:  350 QSSTLYATNLFRLTEELCKTKDGVIDVNMEDEAIRGLTVIKEGSITWPPPPPKVTAAPPAAKXXXXKPEAKKGHGHGAASEPMSGTKLAIMFGVAAALFWFVGANAPAAFLAHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIAIGALVQIAPPL---AGGAAPDSWIRWLAVGGIVLTAVNMFGGFAVTQRMLAMF 550          
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Match: A0A3C0KFA5_9BURK (Proton-translocating NAD(P)(+) transhydrogenase (Fragment) n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A3C0KFA5_9BURK)

HSP 1 Score: 290 bits (741), Expect = 5.460e-93
Identity = 158/205 (77.07%), Postives = 173/205 (84.39%), Query Frame = 1
Query:    1 QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAPPIKLAAPPAAAKPAVAVPAAKKG--HGHGGGAPMAGGKLAIMFAVAAVAFWFIGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIVIGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRMLAMF 609
            QSSTLY+TNLFRL+EELCKTKDGVI+VNM+DDAIRGLTVIK+G ITWPAPP+  AAP  A KPA AV A KKG  HGHG   P+    LAI+FAV A+AFWF+GA APAAFLGHFTVFVLACF+GYMVVWNVTPALHTPLMSVTNAISSII IGALVQIAPPA    G  RPD +I WLA A + LTA+NMFGGFAVT+RMLAMF
Sbjct:  105 QSSTLYATNLFRLSEELCKTKDGVIHVNMDDDAIRGLTVIKDGEITWPAPPLAPAAPRPAPKPAAAV-AEKKGGSHGHGSTGPLPARTLAIIFAVGALAFWFVGAYAPAAFLGHFTVFVLACFIGYMVVWNVTPALHTPLMSVTNAISSIIAIGALVQIAPPAAGSLG--RPDGLILWLAFAALVLTAVNMFGGFAVTRRMLAMF 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198B52DE4.000e-9778.43Re/Si-specific NAD(P)(+) transhydrogenase subunit ... [more]
A0A142LLS0_9PROT1.010e-9680.98NAD(P) transhydrogenase subunit alpha n=2 Tax=uncl... [more]
U4U2R7_DENPD2.080e-9550.96Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A6S6Y3W9_9PROT3.560e-9580.39NAD(P) transhydrogenase subunit alpha n=2 Tax=Deni... [more]
A0A1G8FRN8_9BURK4.490e-9580.39NAD(P) transhydrogenase subunit alpha n=1 Tax=Vari... [more]
A0A1G0CYQ6_9PROT6.720e-9582.93NAD(P) transhydrogenase subunit alpha n=7 Tax=Nitr... [more]
A0A3E1RAD5_9BURK8.460e-9580.88NAD(P) transhydrogenase subunit alpha n=1 Tax=Rhod... [more]
A0A4Y7B3H2_9BURK1.520e-9479.52Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7X6DGX3_9BURK7.040e-9479.90NAD(P) transhydrogenase subunit alpha n=2 Tax=Burk... [more]
A0A3C0KFA5_9BURK5.460e-9377.07Proton-translocating NAD(P)(+) transhydrogenase (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21083contigP-wetherbeei_contig21083:15..1184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3659.XP_004154413.1
PFAMsAlaDh_PNT_C,AlaDh_PNT_N,PNTB,PNTB_4TM
Model size1128
Max annot lvl33090|Viridiplantae
KEGG rclassRC00001
KEGG koko:K00323
KEGG ReactionR00112
KEGG Pathwayko00760,ko01100,map00760,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.06e-102
EggNOG OGsCOG1282@1|root,2QQ0A@2759|Eukaryota,37Q5P@33090|Viridiplantae
EC1.6.1.2
DescriptionNAD(P) transhydrogenase beta subunit
Cds size1128
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.0886958-CDS-P-wetherbeei_contig21083:14..5321683186216.0886958-CDS-P-wetherbeei_contig21083:14..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21083 15..532 -
1683186216.0993934-CDS-P-wetherbeei_contig21083:574..11841683186216.0993934-CDS-P-wetherbeei_contig21083:574..1184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21083 575..1184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21083.2.1prot_P-wetherbeei_contig21083.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21083 15..1184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21083.2.1

>prot_P-wetherbeei_contig21083.2.1 ID=prot_P-wetherbeei_contig21083.2.1|Name=mRNA_P-wetherbeei_contig21083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=376bp
QSSTLYSTNLFRLAEELCKTKDGVINVNMEDDAIRGLTVIKEGAITWPAP
PIKLAAPPAAAKPAVAVPAAKKGHGHGGGAPMAGGKLAIMFAVAAVAFWF
IGANAPAAFLGHFTVFVLACFVGYMVVWNVTPALHTPLMSVTNAISSIIV
IGALVQIAPPALADAGLQRPDDMIRWLAVAGIALTAINMFGGFAVTQRML
AMFLAYIGATILFILSLGGLSNPETSRRGNLYGIIGMTIAVLATVLGPRV
TAAGIPWIVGAMVAGGSIGLYLARTVQMTQMPELVAFMHSLVGLAAVVVG
FASYVDPTSTLNLTSAEKAIHELEVYIGVFIGAVTLSGSVIAFGKLSGKI
SGKPLLLPARHWLNLLGHTGPRPAG*
back to top

mRNA from alignment at P-wetherbeei_contig21083:15..1184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21083.2.1 ID=mRNA_P-wetherbeei_contig21083.2.1|Name=mRNA_P-wetherbeei_contig21083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1170bp|location=Sequence derived from alignment at P-wetherbeei_contig21083:15..1184- (Phaeothamnion wetherbeei SAG_119_79)
CAGTCCTCGACGCTGTATTCGACCAACCTGTTTCGTCTGGCAGAGGAACT GTGCAAAACCAAGGACGGCGTCATCAACGTCAACATGGAAGACGATGCCA TCCGCGGGCTGACGGTCATCAAGGAAGGCGCGATCACGTGGCCTGCACCG CCCATCAAACTGGCTGCCCCGCCTGCGGCTGCCAAGCCGGCCGTTGCTGT GCCGGCCGCCAAGAAGGGGCATGGTCACGGCGGCGGCGCGCCGATGGCAG GAGGCAAGTTGGCAATCATGTTCGCCGTTGCCGCGGTCGCGTTCTGGTTT ATCGGCGCCAATGCGCCGGCGGCCTTCCTCGGTCACTTCACGGTGTTCGT GCTTGCCTGCTTCGTGGGCTATATGGTGGTGTGGAACGTGACGCCCGCGC TGCACACGCCCCTGATGAGCGTGACCAACGCAATCAGCAGCATCATCGTG ATTGGCGCGCTGGTGCAGATCGCGCCGCCGGCGCTTGCCGATGCCGGATT GCAACGCCCGGATGACATGATCCGCTGGCTGGCAGTGGCCGGCATCGCGC TGACCGCCATCAATATGTTCGGCGGTTTCGCCGTCACCCAGCGCATGCTG GCCATGTTCCGTAAATAAGCGAGAAAATCCATGTCCTCAAGCCTGGTCAC AGTCGCTTATATCGGCGCCACCATATTATTCATCCTGAGCCTCGGCGGCC TCTCCAATCCCGAGACTTCGCGGCGCGGCAACCTCTACGGCATCATCGGC ATGACCATCGCGGTGCTCGCCACCGTGCTGGGTCCGCGCGTTACTGCGGC GGGCATTCCGTGGATTGTCGGCGCGATGGTGGCGGGCGGCAGTATCGGCC TTTATCTCGCGCGTACCGTGCAGATGACGCAGATGCCGGAACTCGTCGCT TTCATGCACAGTCTCGTCGGTCTTGCCGCGGTGGTGGTGGGTTTCGCGAG CTATGTTGATCCGACATCGACGCTCAACCTGACGTCCGCGGAGAAGGCGA TACACGAACTTGAAGTCTATATCGGCGTATTCATCGGCGCGGTGACGTTG TCCGGTTCGGTGATCGCGTTCGGCAAACTGTCGGGCAAGATCAGCGGCAA GCCGCTGCTGCTCCCCGCGCGCCACTGGCTGAACCTGCTGGGGCACACTG GCCCCCGGCCAGCGGGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21083:15..1184-

>mRNA_P-wetherbeei_contig21083.2.1 ID=mRNA_P-wetherbeei_contig21083.2.1|Name=mRNA_P-wetherbeei_contig21083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1128bp|location=Sequence derived from alignment at P-wetherbeei_contig21083:15..1184- (Phaeothamnion wetherbeei SAG_119_79)
CAGTCCTCGACGCTGTATTCGACCAACCTGTTTCGTCTGGCAGAGGAACT
GTGCAAAACCAAGGACGGCGTCATCAACGTCAACATGGAAGACGATGCCA
TCCGCGGGCTGACGGTCATCAAGGAAGGCGCGATCACGTGGCCTGCACCG
CCCATCAAACTGGCTGCCCCGCCTGCGGCTGCCAAGCCGGCCGTTGCTGT
GCCGGCCGCCAAGAAGGGGCATGGTCACGGCGGCGGCGCGCCGATGGCAG
GAGGCAAGTTGGCAATCATGTTCGCCGTTGCCGCGGTCGCGTTCTGGTTT
ATCGGCGCCAATGCGCCGGCGGCCTTCCTCGGTCACTTCACGGTGTTCGT
GCTTGCCTGCTTCGTGGGCTATATGGTGGTGTGGAACGTGACGCCCGCGC
TGCACACGCCCCTGATGAGCGTGACCAACGCAATCAGCAGCATCATCGTG
ATTGGCGCGCTGGTGCAGATCGCGCCGCCGGCGCTTGCCGATGCCGGATT
GCAACGCCCGGATGACATGATCCGCTGGCTGGCAGTGGCCGGCATCGCGC
TGACCGCCATCAATATGTTCGGCGGTTTCGCCGTCACCCAGCGCATGCTG
GCCATGTTCCTCGCTTATATCGGCGCCACCATATTATTCATCCTGAGCCT
CGGCGGCCTCTCCAATCCCGAGACTTCGCGGCGCGGCAACCTCTACGGCA
TCATCGGCATGACCATCGCGGTGCTCGCCACCGTGCTGGGTCCGCGCGTT
ACTGCGGCGGGCATTCCGTGGATTGTCGGCGCGATGGTGGCGGGCGGCAG
TATCGGCCTTTATCTCGCGCGTACCGTGCAGATGACGCAGATGCCGGAAC
TCGTCGCTTTCATGCACAGTCTCGTCGGTCTTGCCGCGGTGGTGGTGGGT
TTCGCGAGCTATGTTGATCCGACATCGACGCTCAACCTGACGTCCGCGGA
GAAGGCGATACACGAACTTGAAGTCTATATCGGCGTATTCATCGGCGCGG
TGACGTTGTCCGGTTCGGTGATCGCGTTCGGCAAACTGTCGGGCAAGATC
AGCGGCAAGCCGCTGCTGCTCCCCGCGCGCCACTGGCTGAACCTGCTGGG
GCACACTGGCCCCCGGCCAGCGGGCTGA
back to top