mRNA_P-wetherbeei_contig21024.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21024.1.1
Unique NamemRNA_P-wetherbeei_contig21024.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: D7FRD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD6_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.620e-34
Identity = 107/295 (36.27%), Postives = 145/295 (49.15%), Query Frame = -1
Query:   61 GCGRDGRLGLGD-FASRWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPEAAVWVWGRGAHGRLGCGDLKNRTLPTRL--MQWPPGVYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRNHKAASAGHETDG--AVTVAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARDFRVAPAAVVYPGSDRHLFVAAAAGDRHSVALALETRPP 930
            G G+ G+LGLG+    R  P ++ ALAG  V  V AG AH+L     G    V+ WG G  GRLG GD K+R  P R+  +   P   IG G+            A +                      G +   H      +   G     V   ALGGAH+++L  R     + +P G  S   AWG G  GQLG+G  V  + +P+++   +  ++TS+ AGK+ SLA    G++ AWGKGW G+LG   A+D RVAP  V +PG  RHL V  AAG+RH+ AL L+  PP
Sbjct:  247 GSGQRGQLGLGEGVVDRRTPHVIRALAGLPVRSVVAGAAHALCVTLDGK---VFSWGCGQDGRLGHGDYKDRWEPCRVEGVGSDPVALIGAGA------------AHSMAVSLPQSVHLWGRGAHGRLGTGDNKCRHAPVRLKNWPPGFPGCVVQDVALGGAHSIVLAHRSAPTTLANPWGAESLAYAWGYGYCGQLGLGRRVGEIKMPSKIAFDKKELMTSIVAGKSFSLATNVQGQMFAWGKGWAGQLGLGIAKDSRVAPTRVDFPGVGRHLVVKMAAGERHASALTLDCSPP 526          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: A0A8J2S3N5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S3N5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.390e-32
Identity = 117/302 (38.74%), Postives = 148/302 (49.01%), Query Frame = -1
Query:   73 GCGRDGRLGLGDFASRWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPEAAVWVWGRGAHGRLGCGDLKNRTLPTRLMQW------PPGVYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRNHKAASAGHETDGAVT----------VAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARDFRVAPAAVVYPGSDRHLFVAAAAGDRHSVALALE 930
            G G  G LGLG    R  P  ++AL    V  +A G AH LA  A    AA++VWGRG  GRLG GD ++R  P RL+ +      P  V  GD                ++                     GA GR     +   +T   V           V GAALGGAH+L+L  + +     +P GR   V AWG G  GQ+G    +   ALPTRV +PR+ VV  +A GKAHSLAVTA G+L AWGKGW GELG    R+ R  P  V    S +H F+  AAGDRH++A+AL+
Sbjct:  323 GTGVYGELGLGSTRQRAIPTQMKAL-NRRVHAIACGRAHVLALCA--KPAALFVWGRGRDGRLGHGDYEDRDEPERLVFFDERKLAPRIVAAGDA---------------HSLVVVDAAQGATAPGGVYAWGRGAHGRLGLGRTLNKKTPQNVQKWPSCFQGMHVIGAALGGAHSLVLAEKAIPASGANPWGRQRHVYAWGYGGNGQIG-DECMTDRALPTRVKLPRNEVVQQVACGKAHSLAVTAHGDLYAWGKGWRGELGLGDDRN-RCGPEKV----SGKHQFLKVAAGDRHTLAIALK 600          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: A0A836C846_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C846_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.730e-29
Identity = 103/249 (41.37%), Postives = 121/249 (48.59%), Query Frame = -1
Query:  223 GCGRDGRLGLGDFASRWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPE--------AAVWVWGRGAHGRLGCGDLKNRTLPTRLMQ--WPPGVYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRNHKAASAGHETDGAVTVAGAALGGAHTLLLLLR--PVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVPVPRHH-VVTSLAAGKAHSLAVTASGELLA 930
            G G+DGRLG GD+  R EPA V ALAG  V   AAG AHSLA  A G          AAVW+WGRGAHGRLG GD +NR  P  L +  WP G +            ++   AGN                              AA    +  G +  +  ALGGAHTLLL  R  P  +    P  R S +LAWG G  GQLGVG  VA +  P RV   +   ++T +AAGKAHSLA  A G L A
Sbjct:  382 GAGKDGRLGHGDYKDRCEPAAVAALAGLRVLSAAAGAAHSLAITAPGERRQQQAAGAAAVWLWGRGAHGRLGLGDRRNRHTPALLQRRAWPVGCHE-----------HTPIKAGNQTA---------------------------AAKCDQDNLGQLRTSSGALGGAHTLLLCERSAPWGKTRACPWARTSVILAWGFGGNGQLGVGEWVAEVLTPRRVDFNKGTPLLTDIAAGKAHSLACCAQGRLYA 592          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: A0A6H5J9Y8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.770e-25
Identity = 89/258 (34.50%), Postives = 123/258 (47.67%), Query Frame = -1
Query:   25 VWVWGRGAHGRLGCGDLKNRTLPTRL--MQWPPGVYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRNHKAASAGHETDG--AVTVAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAA--LALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARDFRVAPAAVVYPGSDRHLFVAAAAGDRHSVALALE-TRPPHSWAQYRRHEEL 777
            V+ WG G  GRLG GD K+R  P R+  +   P   IG G+            A +                      G +   H      +   G     V   ALGGAH+++L  R     + +P G  S   AWG G  GQLG+G  V A  + LP     P   ++ S+ AGK+ SLA    G++ AWGKGW G+LG   A+D RVAP  V +PG  RHL V  AAG+RH+ AL L+ + PP  W + ++ +++
Sbjct:  373 VFSWGCGQDGRLGHGDYKDRWEPCRVEGVGSDPVALIGAGA------------AHSMAVSLPQSVHLWGRGAHGRLGTGDNKCRHAPVRLKNWPPGFPGCVVKDVALGGAHSIVLAHRSAPTTLANPWGTESLAYAWGYGYCGQLGLGRRVGACWVKLPNGCTRPLKELIMSIVAGKSFSLAANVQGQMFAWGKGWAGQLGLGIAKDSRVAPTRVEFPGVGRHLVVKMAAGERHASALTLDCSPPPRGWEKDKQWKKV 618          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: F0Y2K8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2K8_AURAN)

HSP 1 Score: 109 bits (272), Expect = 1.400e-24
Identity = 100/274 (36.50%), Postives = 123/274 (44.89%), Query Frame = -1
Query:  118 RWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPEA--AVWVWGRGAHGRLGCGDLKNRTLPTRLMQWPPG------VYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRNHKAASAGHETDGAVT----------VAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARDFRVAPAAVVYPGSDRHLFV 885
            R  P LV ALA   VT +AAG AH LA  A    A  A++ WG G  GRLG  D  +R  PT +  +         V  GD                ++                     GA GR     +        VT          V GAALGGAH+L+L    V   + +P G    + +WG G  GQLG  A V +  +P +V +P+  VV  +A GKAHSLA+T  G+L AWGKGW GELGH  AR  RVAP  V  P    H FV
Sbjct:    2 RAAPTLVPALARRCVTSIAAGKAHVLALCATQGHARSALYAWGAGRDGRLGHDDYAHRFEPTAVAFFQVARLRVRLVAAGDA---------------HSLAVADATEDARERPGVYTWGRGAHGRLGLRRTLNKRRPHLVTEWPPSFRGCRVVGAALGGAHSLVLAEEAVPPGLVNPWGVRRAIYSWGYGANGQLGTDAVVDS-PVPRKVKMPKFEVVAQIACGKAHSLALTVHGDLYAWGKGWQGELGHGDAR-LRVAPKKVDSP----HQFV 254          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: A0A7S1U7D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7D9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.940e-18
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  193 VAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLG---VGAAVAALALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELG 486
            + G A GGAH+LLL+  P  RC+R+  G  + + AWG G  GQLG   VG   A+   P  V +P  H+VT +AAGKAHS+A+T  GE+ AWGKGW+GELG
Sbjct:  227 IRGIAAGGAHSLLLIWLPRPRCIRYHWGVETRIFAWGLGLNGQLGCSWVGLRTAST--PQPVKMPPWHIVTQIAAGKAHSMALTNRGEVFAWGKGWVGELG 325          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: UPI000373ABD3 (RCC1 domain-containing protein n=4 Tax=Salinispora arenicola TaxID=168697 RepID=UPI000373ABD3)

HSP 1 Score: 85.1 bits (209), Expect = 1.060e-14
Identity = 88/294 (29.93%), Postives = 120/294 (40.82%), Query Frame = -1
Query:   58 GRLGLGDFASRWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPEAAVWVWGRGAHGRLGCGDLKNRTLPTRLMQWPPGVYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGR-NHKAASAGHETDGAVTVAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARDFRVAPAAVVYPGSDRHLFVAAAAGDRHSVALA-------LETRPPH 915
            G+LG G    R  P  V+  AG  +T VAAG  HSLA  + G    V  WG  + G+LG     + + P  +   P G  I            +   AG                         DG  N  +     +     T+   A GG H+L +                  VLAWG  T GQLG G+   + + P  V VP    +T++AAG+ HSLAVT++GE+LAWG    G+LG     +   +P AV  P        A A GD HS+A+        L+  PP+
Sbjct:  229 GQLGDGTTTRRRTPVAVDVPAGTTITAVAAGQGHSLAVTSTGD---VLAWGDNSSGQLGDATTTDSSTPVAVGV-PAGTTI------------TAVAAGGLHSLAVTSAGTMLAWGDNGSGQLGDGTTNSSSIPVAVDVPAGTTITAVAAGGRHSLAVT-------------SAGDVLAWGDNTAGQLGDGSTTHS-STPVTVDVPAGTTITAVAAGQGHSLAVTSTGEVLAWGDNTFGQLGDGSTTNSS-SPVAVNMPAGTT--ITALAGGDFHSLAIVPPTSTTTLQASPPN 489          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: A0A7S0EUL9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EUL9_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 2.520e-14
Identity = 105/332 (31.63%), Postives = 130/332 (39.16%), Query Frame = -1
Query:    7 GCGRDGRLGLGDFASRWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPEAAVWVWGRGAHGRLGCGDLKNRTLPTRLM-------------QWPPGVYIGDG---SGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRNHKAASAGHETDGAVTVAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVP--VPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARD----FRVAPAAVVYPGSDRH--LFVAAAAGDRHSVALALETRPPHSWAQYRRHEELAAAGLG 930
            G G +G+LG GD ASR  P L+E L+   V  +A G  HSLAA   G   A++ WG G  GRLG  + + R LP  +              +W       DG   S GGG  G  G G   +                             AA +G      V V G A G  HTL L                  + +WG G  G+LG G     L LPT +   V    VVT LAAG  HSLAVT  G LL WG G  G LGH         +  A   V  P         VA +AG+ H +A+  +    ++W  Y R   L     G
Sbjct:   60 GYGGEGQLGQGDEASRAAPTLIEELSHETVACIAVGDDHSLAATEGG---ALYSWGYGIDGRLGLAEAEGRLLPELVSALGGVRVTGVAAGRWHSLARTADGALYSWGGGGFGRLGHGDEASLRLPTLV----------------------AALSG------VHVTGMAAGAHHTLALT-------------DAGRLYSWGLGGNGRLGHGDTEPRL-LPTPIASLVQSGVVVTCLAAGAHHSLAVTDQGALLTWGDGGGGRLGHGDINALVGVYIEADCLVPTPVEAMRGLCVVAVSAGEEHCLAVTRDGAA-YTWGDYGRESTLGVPRHG 345          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: UPI0009EC6D60 (Ig-like domain repeat protein n=1 Tax=Salinispora fenicalii TaxID=1137263 RepID=UPI0009EC6D60)

HSP 1 Score: 79.7 bits (195), Expect = 6.530e-13
Identity = 85/280 (30.36%), Postives = 115/280 (41.07%), Query Frame = -1
Query:   79 GRLGLGDFASRWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPEAAVWVWGRGAHGRLGCGDLKNRTLPTRLMQWPPGVYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRN-HKAASAGHETDGAVTVAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARDFRVAPAAVVYPGSDRHLFVAAAAGDRHSVALA 915
            G+LG G    R  P  V    G  +T VAAG  HSLA  + G    V  WG  + G+LG G L + + P   +  P G  I            +   AG                         DG    K+     +     T+   + G  HTL +                 T+LAWG    GQLG G+   +   P  V +P    +T++AAG  H+LAVT++G +LAWG   LG++G       R  P AV  P        AAAAG+RHS+A+A
Sbjct:  197 GQLGDGTTTRRSTPVAVNLPTGTTITAVAAGDRHSLALTSTGT---VLAWGDNSAGQLGDGTLTDSSTPV-AVDLPAGTTI------------TTVAAGAYHSLALTSADTLLAWGYNIFGQLGDGTTTDKSTPVAVDLPAGTTITTVSGGARHTLAVT-------------SADTLLAWGHNNFGQLGDGSTTDSNT-PVAVNLPTGTTITTVAAGAFHTLAVTSTGTMLAWGYNALGQVGDGTTATRRRTPVAVDLPAGTT--ITAAAAGNRHSLAIA 444          
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Match: UPI001E52A7CD (Ig-like domain repeat protein n=1 Tax=Salinispora pacifica TaxID=351187 RepID=UPI001E52A7CD)

HSP 1 Score: 76.6 bits (187), Expect = 6.800e-12
Identity = 81/279 (29.03%), Postives = 111/279 (39.78%), Query Frame = -1
Query:   82 DGRLGLGDFASRWEPALVEALAGHVVTLVAAGHAHSLAAVAAGPEAAVWVWGRGAHGRLGCGDLKNRTLPTRLMQWPPGVYIGDGSGGGGSCGNSGQGAGNAXXXXXXXXXXXXXXXXXXXXXGADGRNHKAASAGHETDGAVTVAGAALGGAHTLLLLLRPVQRCMRHPHGRVSTVLAWGCGTGGQLGVGAAVAALALPTRVPVPRHHVVTSLAAGKAHSLAVTASGELLAWGKGWLGELGHSQARDFRVAPAAVVYPGSDRHLFVAAAAGDRHSVAL 918
            DG+LG G   SR  P  V    G  +T +AAG  HSLA  + G    V  WG  + G+LG G   NR+ P   +  PPG  +            +  G  +                      G      ++          V V   A  G H L L                 T+LAWG   GGQLG G   +  + P  V +P    +T++AAG  HSLA+T++G +LAWG  + G+LG     + R  P  V  P        A   G+ HS+A+
Sbjct:  119 DGQLGDGTTTSRSTPVTVNLPPGTTITAIAAGDEHSLALTSTGT---VLAWGDNSEGQLGDGTTTNRSTPV-TVNLPPGTEV-----------TAIAGGDDHSLALTSADTVLAWGENNDGELGDGTTTDRSTPITVNLPVGVAVTAIAAHGDHNLALT-------------STDTMLAWGANFGGQLGDGTTTSK-STPVNVNLPAGVTITAIAAGDEHSLALTSTGTVLAWGDNFDGQLGDGTNTN-RSTPVTVNLPTGVT--ITAITGGNLHSLAV 365          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRD6_ECTSI2.620e-3436.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2S3N5_9STRA7.390e-3238.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836C846_9STRA3.730e-2941.37Regulator of chromosome condensation 1/beta-lactam... [more]
A0A6H5J9Y8_9PHAE3.770e-2534.50WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
F0Y2K8_AURAN1.400e-2436.50Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1U7D9_9STRA5.940e-1851.49Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI000373ABD31.060e-1429.93RCC1 domain-containing protein n=4 Tax=Salinispora... [more]
A0A7S0EUL9_9EUKA2.520e-1431.63Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
UPI0009EC6D606.530e-1330.36Ig-like domain repeat protein n=1 Tax=Salinispora ... [more]
UPI001E52A7CD6.800e-1229.03Ig-like domain repeat protein n=1 Tax=Salinispora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21024contigP-wetherbeei_contig21024:259..1190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size932
Hectar predicted targeting categorymitochondrion
Exons1
Cds size930
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.0632045-CDS-P-wetherbeei_contig21024:258..11881683186215.0632045-CDS-P-wetherbeei_contig21024:258..1188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21024 259..1188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21024.1.1prot_P-wetherbeei_contig21024.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21024 259..1188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21024.1.1

>prot_P-wetherbeei_contig21024.1.1 ID=prot_P-wetherbeei_contig21024.1.1|Name=mRNA_P-wetherbeei_contig21024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=310bp
AVAKASCRQLLVPPVLCPAVRRPRLQRQRDRMAVAGGGGHEEVAVRARVD
DGRRRHTKVPGLTVAQFAQPALAPGQQLPRGGDGEAVSLAGRQRRDDVVT
GNGNSRWERQRGDGGTDAQLAASAAAPSQDRRDAAVGVPHAALDGSQEEQ
QRVRAAERRAGDGHGTVRFVTSAGCFVVPAVSAAVSAAATVSKNAAAAVV
VAASSISGSLPAVSAAAAATTAVTDVDARRPLHQPRRQRSVLQVAAAKAA
VGAAAPHPHGRLWPSCDRRQRMRVACRHQRDDVPRQGFHQSGLPPGRKIP
EPQSAVAPAA
back to top

mRNA from alignment at P-wetherbeei_contig21024:259..1190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21024.1.1 ID=mRNA_P-wetherbeei_contig21024.1.1|Name=mRNA_P-wetherbeei_contig21024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=932bp|location=Sequence derived from alignment at P-wetherbeei_contig21024:259..1190+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGTCGCCAAGGCCAGCTGCCGCCAGCTCCTCGTGCCGCCTGTACTGTG CCCAGCTGTGCGGCGGCCGCGTCTCCAGCGCCAGCGCGACCGAATGGCGG TCGCCGGCGGCGGCGGCCACGAAGAGGTGGCGGTCCGAGCCCGGGTAGAC GACGGCCGCCGGCGCCACACGAAAGTCCCGGGCTTGACTGTGGCCCAGTT CGCCCAGCCAGCCCTTGCCCCAGGCCAGCAGCTCCCCCGAGGCGGTGACG GCGAGGCTGTGAGCCTTGCCGGCCGCCAACGACGTGACGACGTGGTGACG GGGAACGGGAACTCGCGTTGGGAGCGCCAACGCGGCGACGGCGGCACCGA CGCCCAGCTGGCCGCCAGTGCCGCAGCCCCAAGCCAGGACCGTCGAGACG CGGCCGTGGGGGTGCCGCATGCAGCGCTGGACGGGTCGCAGGAGGAGCAG CAGCGTGTGCGCGCCGCCGAGCGCCGCGCCGGCGACGGTCACGGCACCGT CCGTTTCGTGACCAGCGCTGGCTGCTTTGTGGTTCCGGCCGTCAGCGCCG CTGTTTCCGCCGCCGCCACCGTGAGTAAAAACGCTGCCGCCGCCGTCGTC GTCGCTGCCTCCAGCATTTCCGGCTCCTTGCCCGCTGTTTCCGCAGCTGC CGCCGCCACCACTGCCGTCACCGATGTAGACGCCCGGCGGCCATTGCATC AGCCGCGTCGGCAGCGTTCGGTTCTTCAGGTCGCCGCAGCCAAGGCGGCC GTGGGCGCCGCGGCCCCACACCCACACGGCCGCCTCTGGCCCAGCTGCGA CCGCCGCCAGCGAATGCGCGTGGCCTGCCGCCACCAGCGTGACGACGTGC CCCGCCAGGGCTTCCACCAAAGCGGGCTCCCACCGGGACGCAAAATCCCC GAGCCCCAGTCGGCCGTCGCGCCCGCAGCCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21024:259..1190+

>mRNA_P-wetherbeei_contig21024.1.1 ID=mRNA_P-wetherbeei_contig21024.1.1|Name=mRNA_P-wetherbeei_contig21024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=930bp|location=Sequence derived from alignment at P-wetherbeei_contig21024:259..1190+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGTCGCCAAGGCCAGCTGCCGCCAGCTCCTCGTGCCGCCTGTACTGTG
CCCAGCTGTGCGGCGGCCGCGTCTCCAGCGCCAGCGCGACCGAATGGCGG
TCGCCGGCGGCGGCGGCCACGAAGAGGTGGCGGTCCGAGCCCGGGTAGAC
GACGGCCGCCGGCGCCACACGAAAGTCCCGGGCTTGACTGTGGCCCAGTT
CGCCCAGCCAGCCCTTGCCCCAGGCCAGCAGCTCCCCCGAGGCGGTGACG
GCGAGGCTGTGAGCCTTGCCGGCCGCCAACGACGTGACGACGTGGTGACG
GGGAACGGGAACTCGCGTTGGGAGCGCCAACGCGGCGACGGCGGCACCGA
CGCCCAGCTGGCCGCCAGTGCCGCAGCCCCAAGCCAGGACCGTCGAGACG
CGGCCGTGGGGGTGCCGCATGCAGCGCTGGACGGGTCGCAGGAGGAGCAG
CAGCGTGTGCGCGCCGCCGAGCGCCGCGCCGGCGACGGTCACGGCACCGT
CCGTTTCGTGACCAGCGCTGGCTGCTTTGTGGTTCCGGCCGTCAGCGCCG
CTGTTTCCGCCGCCGCCACCGTGAGTAAAAACGCTGCCGCCGCCGTCGTC
GTCGCTGCCTCCAGCATTTCCGGCTCCTTGCCCGCTGTTTCCGCAGCTGC
CGCCGCCACCACTGCCGTCACCGATGTAGACGCCCGGCGGCCATTGCATC
AGCCGCGTCGGCAGCGTTCGGTTCTTCAGGTCGCCGCAGCCAAGGCGGCC
GTGGGCGCCGCGGCCCCACACCCACACGGCCGCCTCTGGCCCAGCTGCGA
CCGCCGCCAGCGAATGCGCGTGGCCTGCCGCCACCAGCGTGACGACGTGC
CCCGCCAGGGCTTCCACCAAAGCGGGCTCCCACCGGGACGCAAAATCCCC
GAGCCCCAGTCGGCCGTCGCGCCCGCAGCC
back to top