mRNA_P-wetherbeei_contig20975.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20975.2.1
Unique NamemRNA_P-wetherbeei_contig20975.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A2V7EAT1_9BACT (POLIIIAc domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7EAT1_9BACT)

HSP 1 Score: 114 bits (286), Expect = 7.730e-29
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
            VHS+   +RE+MTAR+VRA+ HP            LG R PY+ D EAVF AA  H  A+EIN SP R DL+D+ ARRA+++G+ +++ TD H   +FDN+   VAVARRA +   ++LN   +
Sbjct:  135 VHSRFKQTREEMTARIVRALGHPKVHVLAHPTGRLLGSRDPYDVDLEAVFAAARQHGKAIEINASPERLDLADVHARRAAELGIPIAINTDTHYLHNFDNLALGVAVARRAWIGPSQVLNARPL 258          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A7C2J8H8_9BACT (DNA polymerase beta n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7C2J8H8_9BACT)

HSP 1 Score: 115 bits (288), Expect = 1.530e-27
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
            VHS+  MSRE+MTAR+VRAV HP            +G RA YE D EAV KAA    TA+EIN SP R DL+DL ARRA ++G+ + ++TDAH+    D M + V+VARRA L+   +LN
Sbjct:  439 VHSRFKMSREEMTARIVRAVQHPRVHVLGHPTGRLIGERAAYEVDMEAVLKAAHGSGTAVEINASPSRLDLNDLHARRAKELGVPIVISTDAHTIGQLDYMRFGVSVARRAWLTPKDVLN 558          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A3C0A3C4_9BACT (DNA polymerase beta n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3C0A3C4_9BACT)

HSP 1 Score: 114 bits (285), Expect = 4.420e-27
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNC 363
            VHS M +  E+MTAR++ A+++P            L +R PY+ ++ AVFKAA    TA+EING P RQDL+D+ AR A + GL+L L++DAHS A    M  AV VARRAGL+ D +LNC
Sbjct:  471 VHSSMRLGEEEMTARVLSAMANPYMDALAHPSGRQLNKREPYKLNYAAVFKAARHCGTALEINGQPERQDLTDVTARMAKEAGLKLLLSSDAHSAAQLSYMEQAVIVARRAGLTKDDVLNC 591          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A1F4Q0L2_9BACT (DNA polymerase beta n=2 Tax=unclassified candidate division NC10 TaxID=1207073 RepID=A0A1F4Q0L2_9BACT)

HSP 1 Score: 112 bits (279), Expect = 2.660e-26
Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
            VHS+  MSRE+MTAR+VRAV HPL           +G R  YE D EAV  AA    TA+EIN SP R DL+DL ARRA ++G+ +++ TDAH+    D M + V+VARR  L+   +LN
Sbjct:  439 VHSRFKMSREEMTARIVRAVQHPLVHLLGHPTGRLIGERGAYEVDMEAVLAAARTAGTAVEINASPSRLDLNDLHARRARELGIAIAIDTDAHTVDQLDYMRFGVSVARRGWLTPRDVLN 558          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A2V6WIX9_9BACT (DNA polymerase beta n=5 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6WIX9_9BACT)

HSP 1 Score: 110 bits (274), Expect = 1.270e-25
Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
            VHS+    R  MTAR+VRA+ +P            LG R PY+ D +AVF AA AH  A+EIN SP R DL+D  ARRA++ G+ LS++TD H  ++ DN+   VAVARRA L  D+ILN
Sbjct:  438 VHSRFKQERATMTARIVRALGNPHMDILGHPTGRRLGSREPYDVDLDAVFAAARAHGKAVEINASPERLDLNDAHARRAAEAGVLLSISTDTHYLSELDNVDLGVAVARRAWLGRDQILN 557          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A136KEZ2_9BACT (DNA polymerase/3'-5' exonuclease PolX n=1 Tax=Microgenomates bacterium OLB22 TaxID=1617428 RepID=A0A136KEZ2_9BACT)

HSP 1 Score: 108 bits (270), Expect = 4.910e-25
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILN 360
            +HS  + S+EDMT R+++A+S+P            +G+R   +ADW+A+F   + H  AMEIN SP R DL +L+ RRA+  G   S+ TD+H+ A   +M + V+VARRAGL+ D+I+N
Sbjct:  477 IHSSFSQSKEDMTKRILKALSYPKVKIMGHPTGRMIGKRDSIDADWDAIFTHCVKHQIAMEINASPERLDLPELLVRRAADTGCHFSIDTDSHAAAHLPSMLYGVSVARRAGLTKDRIIN 596          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A382FQP9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FQP9_9ZZZZ)

HSP 1 Score: 102 bits (255), Expect = 6.660e-25
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
            VHS M+M    MT R++RA+ HP            LGRR P++ D + V +AAL  + A+EIN +P R DL+D+ ARRA ++G+++++ TDAHS    D+M + V  ARR  +  D +LN  T+
Sbjct:   63 VHSLMDMDETTMTDRVIRAMQHPSVDIIAHPTGRLLGRREPFQLDTDEVLRAALDLDVAVEINANPNRLDLNDVQARRAKELGVKITINTDAHSTQGLDHMSYGVDQARRGWIERDDVLNTMTV 186          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A800JXX9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A800JXX9_9BACT)

HSP 1 Score: 100 bits (250), Expect = 1.260e-24
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
            VHS M+M +  MT R++ A+ HP            LGRR P+  D + V +AA   + A+EIN +P R DLSD+ ARRA ++G+ +S+ TDAHS    D+M + V  ARRA +  D +LN  T+
Sbjct:   20 VHSLMDMDQATMTDRVITAMQHPNVDIVGHPTGRLLGRREPFRLDMDEVLRAASELDVAVEINANPNRLDLSDIQARRAKELGVMISINTDAHSVQRLDHMSYGVDQARRAWIEKDDVLNTMTV 143          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A3D0YXW2_9FIRM (POLIIIAc domain-containing protein (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D0YXW2_9FIRM)

HSP 1 Score: 105 bits (262), Expect = 2.320e-24
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCE 366
            VH+++ + RE MTAR +RA   P            +G+R PYE D + V +A     T +EIN SP R D+ D  AR+A ++G++L L TDAH+P   ++M W +A+ARRA L  + ++NC 
Sbjct:  281 VHTRLRLDREAMTARFLRAAEEPSVDALGHLTGRLIGQRDPYEVDLDRVLEACRRTGTWLEINASPERLDVDDRAARKARELGVKLMLGTDAHAPVCLEDMAWGIAIARRAWLGPEDVVNCR 402          
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Match: A0A538R142_9BACT (DNA-directed DNA polymerase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A538R142_9BACT)

HSP 1 Score: 106 bits (264), Expect = 3.010e-24
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 VHSQMNMSREDMTARLVRAVSHPLAXXXXXXXXXXLGRRAPYEADWEAVFKAALAHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWAVAVARRAGLSVDKILNCETM 372
            VHS+   SRE+MTAR+VRA+++P            L  RAPY+ D EAVF+AA  H  A+EIN SP R DL D  ARRA+ +G+ ++++TD H   + +++   VAVARRA L   ++LN   +
Sbjct:  439 VHSRFKQSREEMTARIVRALANPWMNVLAHPTGRLLSSRAPYDVDLEAVFEAAARHGKAVEINASPDRLDLGDTHARRAAALGIPIAISTDTHYLRELEHVELGVAVARRAWLEPAQVLNARPL 562          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20975.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V7EAT1_9BACT7.730e-2945.97POLIIIAc domain-containing protein n=1 Tax=Candida... [more]
A0A7C2J8H8_9BACT1.530e-2750.83DNA polymerase beta n=1 Tax=candidate division NC1... [more]
A0A3C0A3C4_9BACT4.420e-2748.76DNA polymerase beta n=1 Tax=Elusimicrobia bacteriu... [more]
A0A1F4Q0L2_9BACT2.660e-2649.17DNA polymerase beta n=2 Tax=unclassified candidate... [more]
A0A2V6WIX9_9BACT1.270e-2549.17DNA polymerase beta n=5 Tax=Candidatus Rokubacteri... [more]
A0A136KEZ2_9BACT4.910e-2542.50DNA polymerase/3'-5' exonuclease PolX n=1 Tax=Micr... [more]
A0A382FQP9_9ZZZZ6.660e-2541.13Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A800JXX9_9BACT1.260e-2441.94Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A3D0YXW2_9FIRM2.320e-2440.16POLIIIAc domain-containing protein (Fragment) n=1 ... [more]
A0A538R142_9BACT3.010e-2444.35DNA-directed DNA polymerase n=1 Tax=Candidatus Rok... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20975contigP-wetherbeei_contig20975:818..1192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog671143.DAMO_2750
Preferred namepolX
PFAMsDNA_pol_B_palm,DNA_pol_B_thumb,HHH_5,HHH_8,PHP
Model size375
Max annot lvl2|Bacteria
KEGG koko:K02347,ko:K04477
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.83e-22
EggNOG OGsCOG1387@1|root,COG1796@1|root,COG1387@2|Bacteria,COG1796@2|Bacteria,2NNNK@2323|unclassified Bacteria
DescriptionDNA polymerase X family
Cds size363
COG categoryL
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186213.1654484-CDS-P-wetherbeei_contig20975:817..11801683186213.1654484-CDS-P-wetherbeei_contig20975:817..1180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20975 818..1180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186213.1906781-UTR-P-wetherbeei_contig20975:1180..11921683186213.1906781-UTR-P-wetherbeei_contig20975:1180..1192Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20975 1181..1192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20975.2.1prot_P-wetherbeei_contig20975.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20975 818..1180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20975.2.1

>prot_P-wetherbeei_contig20975.2.1 ID=prot_P-wetherbeei_contig20975.2.1|Name=mRNA_P-wetherbeei_contig20975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MNMSREDMTARLVRAVSHPLARVLAHPSGRVLGRRAPYEADWEAVFKAAL
AHNTAMEINGSPRRQDLSDLMARRASQIGLRLSLATDAHSPADFDNMGWA
VAVARRAGLSVDKILNCETM*
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mRNA from alignment at P-wetherbeei_contig20975:818..1192-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20975.2.1 ID=mRNA_P-wetherbeei_contig20975.2.1|Name=mRNA_P-wetherbeei_contig20975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig20975:818..1192- (Phaeothamnion wetherbeei SAG_119_79)
GTTCACAGCCAGATGAACATGTCCAGGGAGGACATGACGGCGCGGCTGGT GCGCGCCGTATCCCATCCTCTCGCGCGCGTTTTGGCACATCCAAGCGGAC GCGTTTTGGGACGCCGCGCACCTTATGAGGCAGATTGGGAAGCGGTCTTC AAAGCTGCGCTCGCTCATAACACGGCGATGGAAATCAACGGTTCCCCGCG ACGCCAGGATCTCTCGGATTTGATGGCTCGACGAGCTTCCCAGATCGGAC TGAGGCTTTCTCTGGCAACCGACGCACATTCCCCGGCCGACTTCGACAAT ATGGGGTGGGCCGTGGCGGTCGCTCGGCGAGCGGGCTTGAGCGTCGACAA AATCCTGAACTGCGAGACCATGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20975:818..1192-

>mRNA_P-wetherbeei_contig20975.2.1 ID=mRNA_P-wetherbeei_contig20975.2.1|Name=mRNA_P-wetherbeei_contig20975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig20975:818..1192- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACATGTCCAGGGAGGACATGACGGCGCGGCTGGTGCGCGCCGTATC
CCATCCTCTCGCGCGCGTTTTGGCACATCCAAGCGGACGCGTTTTGGGAC
GCCGCGCACCTTATGAGGCAGATTGGGAAGCGGTCTTCAAAGCTGCGCTC
GCTCATAACACGGCGATGGAAATCAACGGTTCCCCGCGACGCCAGGATCT
CTCGGATTTGATGGCTCGACGAGCTTCCCAGATCGGACTGAGGCTTTCTC
TGGCAACCGACGCACATTCCCCGGCCGACTTCGACAATATGGGGTGGGCC
GTGGCGGTCGCTCGGCGAGCGGGCTTGAGCGTCGACAAAATCCTGAACTG
CGAGACCATGTAA
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