mRNA_P-wetherbeei_contig20973.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20973.2.1
Unique NamemRNA_P-wetherbeei_contig20973.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: A0A6L8EHA4_9GAMM (Hydroxyquinol 1,2-dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EHA4_9GAMM)

HSP 1 Score: 206 bits (524), Expect = 6.030e-64
Identity = 94/117 (80.34%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRSPVTWNPSIVSVV  SAYCPTSEEHILP+ HGNDRVEWFIQ+SDEITW+VADKNTAAP +++TMKAGD+A MPADI HRG++PKRSMLLVWEN+TPGLE+RY+ GEL P  A F
Sbjct:  222 LSRSPVTWNPSIVSVVRSSAYCPTSEEHILPVDHGNDRVEWFIQMSDEITWKVADKNTAAPMSVVTMKAGDVACMPADIRHRGFSPKRSMLLVWENLTPGLEKRYADGELPPVPATF 338
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: A0A3D5DG91_9GAMM (Hydroxyquinol 1,2-dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG91_9GAMM)

HSP 1 Score: 204 bits (518), Expect = 3.880e-63
Identity = 93/117 (79.49%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRSPVTWNPSIVS+V  SAYCPTSEEHILPI HGNDRVEWFIQLSDEI+W+V DK++ APRA++TMKAGD++ MPADI H+G++PKRSMLLVWEN+TPGLE RYSSGEL P  AEF
Sbjct:  214 LSRSPVTWNPSIVSIVKNSAYCPTSEEHILPIDHGNDRVEWFIQLSDEISWRVGDKDSGAPRAVVTMKAGDVSCMPADIRHKGFSPKRSMLLVWENLTPGLELRYSSGELPPVPAEF 330
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: B2JUH3_PARP8 (PnpCD_PnpD_N domain-containing protein n=40 Tax=Burkholderiaceae TaxID=119060 RepID=B2JUH3_PARP8)

HSP 1 Score: 184 bits (466), Expect = 3.400e-55
Identity = 83/117 (70.94%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ SV G+S +CPT+EE+ILP+ HGNDRVEWF+QLSDEI W + DKNT APRA ITM+AGDI AMPADI H+GY+ KRSMLLVWEN TP L +RY SGEL P   +F
Sbjct:  223 LSRSDVTWNPSVTSVCGESLFCPTTEEYILPVFHGNDRVEWFLQLSDEIVWDIGDKNTGAPRARITMRAGDICAMPADIRHQGYSTKRSMLLVWENATPNLPKRYESGELKPYPVDF 339
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: UPI000487B297 (hydroxyquinol 1,2-dioxygenase n=1 Tax=Paraburkholderia oxyphila TaxID=614212 RepID=UPI000487B297)

HSP 1 Score: 184 bits (466), Expect = 3.400e-55
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ SV G S +CPT+EE+ILP+ HGNDRVEWF+QLSDEI W V DKNT APRA ITM+AGDI AMPADI H+GY+ KRSMLLVWEN TP L +RY SGEL P   +F
Sbjct:  223 LSRSDVTWNPSVTSVCGSSLFCPTTEEYILPVFHGNDRVEWFLQLSDEIVWDVGDKNTGAPRARITMRAGDICAMPADIRHKGYSTKRSMLLVWENATPNLPKRYESGELKPYPVDF 339
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: UPI0003FB40ED (hydroxyquinol 1,2-dioxygenase n=1 Tax=unclassified Cupriavidus TaxID=2640874 RepID=UPI0003FB40ED)

HSP 1 Score: 183 bits (464), Expect = 6.790e-55
Identity = 84/117 (71.79%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ SV GQS +CPT+EE ILP+ HGNDRVEWF+QLSDEI W + DKNT APRA +TM+AGDI AMPADI H+GY+ KRSMLLVWEN TP L  RY SGEL P   EF
Sbjct:  223 LSRSDVTWNPSVTSVCGQSLFCPTTEEFILPVFHGNDRVEWFLQLSDEIVWDIGDKNTGAPRARVTMRAGDICAMPADIRHQGYSTKRSMLLVWENATPDLPGRYESGELKPYPVEF 339
[Close]
BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: A2W121_9BURK (PnpCD_PnpD_N domain-containing protein n=304 Tax=Burkholderiaceae TaxID=119060 RepID=A2W121_9BURK)

HSP 1 Score: 184 bits (466), Expect = 1.090e-54
Identity = 85/117 (72.65%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ SV G+S +CPT+EE ILP+ HGNDRVEWF+QLSDEI W + DKNT APRA ITM+AGDI AMPADI H+GY+ KRSMLLVWEN TP L QRY SGELAP    F
Sbjct:  269 LSRSDVTWNPSVTSVCGRSLFCPTTEEFILPVFHGNDRVEWFLQLSDEIVWDIGDKNTGAPRARITMRAGDICAMPADIRHQGYSTKRSMLLVWENATPDLPQRYESGELAPYPIAF 385
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: A0A1L6HUT7_9BURK (Hydroxyquinol 1,2-dioxygenase n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A1L6HUT7_9BURK)

HSP 1 Score: 182 bits (462), Expect = 1.160e-54
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ SV G S +CPT+EE +LP+ HGNDRVEWF+QLSD+I W +ADKNT  PRA ITM  GDIAAMPADI H+GY+PKRSMLLVWEN+TPGL +RY  GEL P    F
Sbjct:  217 LSRSDVTWNPSVTSVCGHSLFCPTTEEFMLPVFHGNDRVEWFLQLSDQIVWDIADKNTGEPRARITMNPGDIAAMPADIRHKGYSPKRSMLLVWENVTPGLHERYECGELPPHPIRF 333
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: A0A512N2V0_9HYPH (PnpCD_PnpD_N domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A512N2V0_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 1.470e-54
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ +V   S  CPT+EE ILP+ HGNDRVEWFIQLSDEI W V DKNT APRA +TMKAGD+AAMPADI H+GY+ KRSML VWEN+TPGL QRY SGEL+P   +F
Sbjct:  213 LSRSDVTWNPSVTAVCKASLACPTTEEFILPVFHGNDRVEWFIQLSDEIVWDVGDKNTGAPRARVTMKAGDVAAMPADIRHQGYSTKRSMLYVWENVTPGLPQRYESGELSPYPVDF 329
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BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: A0A375GHK1_9BURK (PnpCD_PnpD_N domain-containing protein n=9 Tax=Cupriavidus TaxID=106589 RepID=A0A375GHK1_9BURK)

HSP 1 Score: 181 bits (460), Expect = 2.860e-54
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ SV GQS +CPT+EE ILP+ HGNDRVEWF+QLSDEI W + DKNT +PRA ITM+AGDI AMPADI H+GY+ +RSMLLVWEN TP L +RY SGEL P   +F
Sbjct:  225 LSRSDVTWNPSVTSVCGQSLFCPTTEEFILPVFHGNDRVEWFLQLSDEIVWDIGDKNTGSPRARITMRAGDICAMPADIRHQGYSTRRSMLLVWENATPNLPKRYESGELKPYPVDF 341
[Close]
BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Match: A0A5P3VEW8_9BURK (Hydroxyquinol 1,2-dioxygenase n=1 Tax=Cupriavidus oxalaticus TaxID=96344 RepID=A0A5P3VEW8_9BURK)

HSP 1 Score: 181 bits (460), Expect = 2.860e-54
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEITWQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPGLEQRYSSGELAPTAAEF 351
            LSRS VTWNPS+ SV GQS +CPT+EE ILP+ HGNDRVEWF+QLSDEI W + DKNT +PRA ITM+AGDI AMPADI H+GY+ +RSMLLVWEN TP L +RY SGEL P   +F
Sbjct:  225 LSRSDVTWNPSVTSVCGQSLFCPTTEEFILPVFHGNDRVEWFLQLSDEIVWDIGDKNTGSPRARITMRAGDICAMPADIRHQGYSTRRSMLLVWENATPNLPKRYESGELKPYPVDF 341
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20973.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L8EHA4_9GAMM6.030e-6480.34Hydroxyquinol 1,2-dioxygenase n=1 Tax=Gammaproteob... [more]
A0A3D5DG91_9GAMM3.880e-6379.49Hydroxyquinol 1,2-dioxygenase n=1 Tax=Gammaproteob... [more]
B2JUH3_PARP83.400e-5570.94PnpCD_PnpD_N domain-containing protein n=40 Tax=Bu... [more]
UPI000487B2973.400e-5571.79hydroxyquinol 1,2-dioxygenase n=1 Tax=Paraburkhold... [more]
UPI0003FB40ED6.790e-5571.79hydroxyquinol 1,2-dioxygenase n=1 Tax=unclassified... [more]
A2W121_9BURK1.090e-5472.65PnpCD_PnpD_N domain-containing protein n=304 Tax=B... [more]
A0A1L6HUT7_9BURK1.160e-5470.09Hydroxyquinol 1,2-dioxygenase n=2 Tax=Paraburkhold... [more]
A0A512N2V0_9HYPH1.470e-5471.79PnpCD_PnpD_N domain-containing protein n=3 Tax=Alp... [more]
A0A375GHK1_9BURK2.860e-5470.09PnpCD_PnpD_N domain-containing protein n=9 Tax=Cup... [more]
A0A5P3VEW8_9BURK2.860e-5470.09Hydroxyquinol 1,2-dioxygenase n=1 Tax=Cupriavidus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20973contigP-wetherbeei_contig20973:840..1193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog395019.Bmul_6073
Model size354
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.46e-57
EggNOG OGs28IZD@1|root,2Z8WU@2|Bacteria,1NEGQ@1224|Proteobacteria,2VNRH@28216|Betaproteobacteria,1K4V7@119060|Burkholderiaceae
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186213.1196167-CDS-P-wetherbeei_contig20973:839..11931683186213.1196167-CDS-P-wetherbeei_contig20973:839..1193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20973 840..1193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20973.2.1prot_P-wetherbeei_contig20973.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20973 840..1193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20973.2.1

>prot_P-wetherbeei_contig20973.2.1 ID=prot_P-wetherbeei_contig20973.2.1|Name=mRNA_P-wetherbeei_contig20973.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
LSRSPVTWNPSIVSVVGQSAYCPTSEEHILPILHGNDRVEWFIQLSDEIT
WQVADKNTAAPRAIITMKAGDIAAMPADISHRGYAPKRSMLLVWENMTPG
LEQRYSSGELAPTAAEF*
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mRNA from alignment at P-wetherbeei_contig20973:840..1193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20973.2.1 ID=mRNA_P-wetherbeei_contig20973.2.1|Name=mRNA_P-wetherbeei_contig20973.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig20973:840..1193- (Phaeothamnion wetherbeei SAG_119_79)
CTGTCGCGCTCACCGGTGACCTGGAATCCTTCCATTGTCTCGGTGGTCGG
TCAGAGCGCCTATTGTCCGACCTCGGAAGAGCACATCCTGCCGATACTGC
ATGGCAATGATCGCGTCGAGTGGTTTATTCAACTGTCGGACGAGATCACC
TGGCAGGTAGCGGATAAAAATACCGCCGCGCCGCGCGCCATTATCACCAT
GAAGGCCGGTGACATCGCCGCCATGCCGGCCGACATCAGCCACCGCGGCT
ATGCGCCTAAACGCTCCATGCTGCTGGTGTGGGAGAACATGACGCCGGGT
TTGGAACAGCGCTACAGCTCGGGCGAGTTGGCGCCGACGGCGGCGGAGTT
TTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20973:840..1193-

>mRNA_P-wetherbeei_contig20973.2.1 ID=mRNA_P-wetherbeei_contig20973.2.1|Name=mRNA_P-wetherbeei_contig20973.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig20973:840..1193- (Phaeothamnion wetherbeei SAG_119_79)
CTGTCGCGCTCACCGGTGACCTGGAATCCTTCCATTGTCTCGGTGGTCGG
TCAGAGCGCCTATTGTCCGACCTCGGAAGAGCACATCCTGCCGATACTGC
ATGGCAATGATCGCGTCGAGTGGTTTATTCAACTGTCGGACGAGATCACC
TGGCAGGTAGCGGATAAAAATACCGCCGCGCCGCGCGCCATTATCACCAT
GAAGGCCGGTGACATCGCCGCCATGCCGGCCGACATCAGCCACCGCGGCT
ATGCGCCTAAACGCTCCATGCTGCTGGTGTGGGAGAACATGACGCCGGGT
TTGGAACAGCGCTACAGCTCGGGCGAGTTGGCGCCGACGGCGGCGGAGTT
TTAG
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