mRNA_P-wetherbeei_contig20971.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20971.1.1
Unique NamemRNA_P-wetherbeei_contig20971.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A6I3WMX4_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=2 Tax=root TaxID=1 RepID=A0A6I3WMX4_9ACTN)

HSP 1 Score: 635 bits (1638), Expect = 6.390e-228
Identity = 331/383 (86.42%), Postives = 350/383 (91.38%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANGS 1149
            +DLFEYQGKQYFAR+ IPVSPGG+A TV+EAV  A AAGYPVVVKAQVQVGGRGKAGGIKLAN+ADEVRLHAGNILGMDIKGHVVKRVWVE ASDIAEEYYASFTLDRAAKKHLLMLS EGGVEIE VAETNPDAILLRH++P+DGIDL WARQAAID   P QS+EGVA ILV+LYRC+TEGDCDLAEINPLILKPTGEIHALDAKVSLDNNA FRHPEW EY ATEELD RE MAR+  LQYIGL G+VGIIANGAGLAMSTLDVVNQVGG+AANFLDIGGGANAD+M+AALEVIN D +V SI INIFGGITRGEEVAKGIVEAL RV+LRAPIVIRLDGTNA EGRQIL  AGIPES L SKPTMLEAARAAVAIAN +
Sbjct:    1 MDLFEYQGKQYFARYGIPVSPGGIADTVEEAVVQAAAAGYPVVVKAQVQVGGRGKAGGIKLANNADEVRLHAGNILGMDIKGHVVKRVWVEYASDIAEEYYASFTLDRAAKKHLLMLSVEGGVEIETVAETNPDAILLRHINPIDGIDLDWARQAAIDAKMPAQSVEGVASILVQLYRCFTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNADFRHPEWAEYHATEELDERELMARDKGLQYIGLQGSVGIIANGAGLAMSTLDVVNQVGGAAANFLDIGGGANADLMSAALEVINSDHSVKSILINIFGGITRGEEVAKGIVEALNRVELRAPIVIRLDGTNATEGRQILESAGIPESVLQSKPTMLEAARAAVAIANAN 383          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A6I3EU16_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=4 Tax=root TaxID=1 RepID=A0A6I3EU16_9ACTN)

HSP 1 Score: 627 bits (1618), Expect = 7.360e-225
Identity = 322/383 (84.07%), Postives = 354/383 (92.43%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANGS 1149
            +DLFEYQGKQYFARFDIPVSPG VAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLA++ADEVRLHAGNI+GMDIKGH+VKRVWVE+ASDI +EYYAS++LDR AKKHLLMLS EGGVEIE+VAE+NPDAI+L H+DPVDGI LA AR AA+      ++++GVA++LVKLY C+T GDCDLAEINPLIL+P G +HALDAKVSLDNNA FRHPEW+E+RATEELD REQ+AR HDLQYIGLDG+VGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANAD+M AALEVIN DQ+V SIFINIFGGITRGEEVAKGIVEAL RV+LRAPIVIRLDGTNA EGR IL  AGIPESKLTSKPTMLEAARAAVA+ANG+
Sbjct:    1 MDLFEYQGKQYFARFDIPVSPGDVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLADNADEVRLHAGNIIGMDIKGHLVKRVWVEHASDIVKEYYASYSLDRGAKKHLLMLSAEGGVEIESVAESNPDAIVLLHIDPVDGITLAVARDAAVRAKIDAEAVDGVAEMLVKLYDCFTRGDCDLAEINPLILRPDGGVHALDAKVSLDNNAGFRHPEWEEFRATEELDEREQLARTHDLQYIGLDGSVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADMMTAALEVINSDQSVKSIFINIFGGITRGEEVAKGIVEALRRVELRAPIVIRLDGTNAEEGRAILAAAGIPESKLTSKPTMLEAARAAVALANGT 383          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A524B599_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B599_9ACTN)

HSP 1 Score: 625 bits (1612), Expect = 5.820e-224
Identity = 320/382 (83.77%), Postives = 352/382 (92.15%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANG 1146
            +DLFEYQGKQYFARFDIPVSPGG A TVDEAV  A AAG+PVVVKAQVQVGGRGKAGGIKLAN+ DEVRLHAGNILGMDIKGHVVKR+WVE+ASDIAEEYYAS+TLDR+AKKHLLMLS +GGV+IE VA  +P AI+  H+DPVDGI  A ARQAA+D   P ++++GVA ILV+LYRC+TEGDCDLAEINPLILKPTGE+HALDAKVSLDNNA+FRHPEW+EYRATEELD REQ+AR HDLQYIGL+G+VGIIANGAGLAMSTLDVVNQVGG AANFLDIGGGANADVMAAALEVINFDQNV SIFINIFGGITRGEEVAKGIVEA+GRV LRAP++IRLDGTNA +GR+IL +AGIPES L SKPTMLEAA+AAVAIANG
Sbjct:    1 MDLFEYQGKQYFARFDIPVSPGGAADTVDEAVEVANAAGFPVVVKAQVQVGGRGKAGGIKLANNVDEVRLHAGNILGMDIKGHVVKRLWVEHASDIAEEYYASYTLDRSAKKHLLMLSAQGGVDIEDVAAKDPTAIVKLHIDPVDGISEATARQAAVDARIPAKAVDGVAKILVQLYRCFTEGDCDLAEINPLILKPTGEVHALDAKVSLDNNASFRHPEWEEYRATEELDAREQLARTHDLQYIGLEGSVGIIANGAGLAMSTLDVVNQVGGQAANFLDIGGGANADVMAAALEVINFDQNVKSIFINIFGGITRGEEVAKGIVEAVGRVKLRAPMIIRLDGTNAEQGREILKNAGIPESILKSKPTMLEAAQAAVAIANG 382          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A4V3EIZ2_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=3 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4V3EIZ2_9ACTN)

HSP 1 Score: 624 bits (1610), Expect = 1.170e-223
Identity = 319/383 (83.29%), Postives = 351/383 (91.64%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANGS 1149
            +DLFEYQGKQYFAR+ IPVSPG  A TVDEAV AAE AGYPVVVKAQVQVGGRGKAGGIKLA++ADEVR HAGNILGMDIKGHVV+R+WVE+ASDI EEYYASFTLDRAAKKHLLMLS EGGVEIEAVAE+NPDAI+  H+DPVDG+DLA ARQAA+D   PE++++G ADILVKLY C+TEGDCDLAEINPLILKPTGE+HALDAKV+LD NA FRHPEW++++   E+D RE+MA E DLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGG+AANFLDIGGGANADVMA ALEVINFD+NV SIFINIFGGITRGEEVAKGIVEALGRVDL+APIVIRLDGTNA EGRQIL DAGIPE KL S+PTML+AARAAVA+A G+
Sbjct:    1 MDLFEYQGKQYFARYGIPVSPGAPADTVDEAVTAAEDAGYPVVVKAQVQVGGRGKAGGIKLADNADEVREHAGNILGMDIKGHVVRRLWVEHASDIEEEYYASFTLDRAAKKHLLMLSAEGGVEIEAVAESNPDAIVKLHIDPVDGLDLATARQAAVDAKLPERALDGAADILVKLYTCFTEGDCDLAEINPLILKPTGEVHALDAKVTLDGNAEFRHPEWEDFKGLTEMDDREKMAAEKDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGAAANFLDIGGGANADVMAGALEVINFDENVKSIFINIFGGITRGEEVAKGIVEALGRVDLKAPIVIRLDGTNAEEGRQILADAGIPEDKLRSEPTMLDAARAAVALAAGA 383          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A6L6BLY0_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=7 Tax=root TaxID=1 RepID=A0A6L6BLY0_9ACTN)

HSP 1 Score: 623 bits (1606), Expect = 4.770e-223
Identity = 321/382 (84.03%), Postives = 348/382 (91.10%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANG 1146
            +DLFEYQGKQYFARFDIPVS GG A TVDEAV  A+A+GYPVVVKAQVQVGGRGKAGGIKLAN+A+E RLHA NILGMDIKGHVVK VWVENASDI EEYYASFTLDRAAKKHLLMLS +GGVEIE VAE +PDAI+  H+DPVDG+  A A +AA+D   P ++++GVA ILV+LYRC+TEGDCDLAEINPLILKPTGE+HALDAKV+LD+NAAFRHPEWDEYRA EELD REQ+AR H LQYIGLDGTVGIIANGAGLAMSTLDVVNQVGG+AANFLDIGGGANADVMAAALEVINFD+ VTSIFINIFGGITRGEEVAKGIVEAL RV L+APIVIRLDGTNA EGR+IL DAGIPES L SKPTMLEAARAAVAI+NG
Sbjct:    1 MDLFEYQGKQYFARFDIPVSRGGAATTVDEAVKVADASGYPVVVKAQVQVGGRGKAGGIKLANNAEEARLHANNILGMDIKGHVVKCVWVENASDIDEEYYASFTLDRAAKKHLLMLSAQGGVEIEEVAEKDPDAIIKLHIDPVDGLSPAAAHKAAVDAKIPAKAVDGVAKILVQLYRCFTEGDCDLAEINPLILKPTGEVHALDAKVTLDDNAAFRHPEWDEYRAAEELDAREQLARTHGLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGTAANFLDIGGGANADVMAAALEVINFDEKVTSIFINIFGGITRGEEVAKGIVEALSRVTLKAPIVIRLDGTNAEEGRKILADAGIPESTLISKPTMLEAARAAVAISNG 382          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A539DY24_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DY24_9ACTN)

HSP 1 Score: 623 bits (1607), Expect = 5.420e-223
Identity = 322/383 (84.07%), Postives = 350/383 (91.38%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANGS 1149
            +DLFEYQGKQYFAR+DI VSPG VAYTVDEAVAAAE AGYPVVVKAQVQVGGRGKAGGIKLA++ADEVRLHAG+ILGMDIKGH VKRVWVE+ASDIA+EYYAS++LDRAAKKHLLMLS  GG+EIE VA  NP+AI+L H+DPVDGI L  AR AA+D     Q+++GVA +LV LYRC+TEGDCDLAEINPLIL+P G +HALDAKVSLDNNAAFRHPEWDE+RATEELD REQ+AR HDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANAD+MAAALEVINFDQNV SI INIFGGITRGEEVA GIVEALGRV LRAPIVIRLDGTNA +GR+IL +AGIP SKLTSKPTMLEAARAAVAIAN +
Sbjct:    1 MDLFEYQGKQYFARYDIAVSPGDVAYTVDEAVAAAEMAGYPVVVKAQVQVGGRGKAGGIKLADNADEVRLHAGSILGMDIKGHTVKRVWVEHASDIAKEYYASYSLDRAAKKHLLMLSAAGGIEIETVALENPEAIVLLHIDPVDGISLDAARAAAVDAHIDAQAVDGVAVMLVALYRCFTEGDCDLAEINPLILRPDGGVHALDAKVSLDNNAAFRHPEWDEFRATEELDEREQLARSHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADMMAAALEVINFDQNVASILINIFGGITRGEEVANGIVEALGRVALRAPIVIRLDGTNAEQGREILANAGIPASKLTSKPTMLEAARAAVAIANAT 383          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A094PIX2_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=19 Tax=root TaxID=1 RepID=A0A094PIX2_9ACTN)

HSP 1 Score: 620 bits (1598), Expect = 7.320e-222
Identity = 321/380 (84.47%), Postives = 347/380 (91.32%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIA 1140
            +DLFEYQGKQYFAR+DIPVS G VA TVD+A+AAA+AAGYPVVVKAQVQVGGRGKAGGIKLAN+ADEVR HAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDR AKKHLLMLS+EGGVEIE VAE NP AIL+ H+DPVDG+  A A++AA+D   P+ + +GVADILVKLYRC+ EGDCDLAEINPLILKPTGE+HALDAKVSLD NA FRHPEW E++AT ELD RE +ARE  LQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMA ALEVIN D+NV SIFINIFGGITRG+EVAKGIVEALGRVDLRAPIVIRLDGTNA EGR IL +AGIPESKLTSK TMLEAA+AAVA+A
Sbjct:    1 MDLFEYQGKQYFARYDIPVSKGDVAVTVDQAIAAADAAGYPVVVKAQVQVGGRGKAGGIKLANNADEVRTHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRGAKKHLLMLSREGGVEIEEVAEKNPAAILMLHIDPVDGLSAAAAKKAAVDAKIPDAAQQGVADILVKLYRCFVEGDCDLAEINPLILKPTGEVHALDAKVSLDENAEFRHPEWAEFQATVELDARELLAREKGLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAGALEVINSDKNVKSIFINIFGGITRGDEVAKGIVEALGRVDLRAPIVIRLDGTNATEGRDILKNAGIPESKLTSKSTMLEAAQAAVALA 380          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: UPI000E341B6A (ADP-forming succinate--CoA ligase subunit beta n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E341B6A)

HSP 1 Score: 615 bits (1586), Expect = 5.290e-220
Identity = 319/383 (83.29%), Postives = 346/383 (90.34%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANGS 1149
            +DLFEYQGKQYFARF IPVSPGGVA TVDEAVA A+AAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGH V+R+W+ENASDI EEYYASFTLDRAAK+HLLMLS EGGVEIE VA TNPDAI+  HV+PVDG+ +  ARQAAID   PE++++GVA ILVKLY C+T GDCDLAEINPLILKPTGE+HALDAKVSLD+NAAFRHPEW+EY A E LD RE+MA++ DLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAAL+VIN D+ V SIFINIFGGITRGEEVAKGIVEAL RV LRAPIVIRLDGTNA EGR+IL  AGIP  +L SKPTML+AAR AVAIA G+
Sbjct:    1 MDLFEYQGKQYFARFGIPVSPGGVADTVDEAVAQADAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHTVERLWIENASDIEEEYYASFTLDRAAKQHLLMLSAEGGVEIEEVAVTNPDAIVKLHVNPVDGLSVETARQAAIDAKIPERALDGVASILVKLYDCFTAGDCDLAEINPLILKPTGEVHALDAKVSLDSNAAFRHPEWEEYSAIEVLDDRERMAKDRDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALDVINHDEKVKSIFINIFGGITRGEEVAKGIVEALSRVALRAPIVIRLDGTNAEEGREILAAAGIPPEQLISKPTMLDAAREAVAIAGGN 383          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A2G6KA74_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=1 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A2G6KA74_9ACTN)

HSP 1 Score: 613 bits (1580), Expect = 4.500e-219
Identity = 312/384 (81.25%), Postives = 351/384 (91.41%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANGSK 1152
            +DLFEYQGKQYFAR+ IPVSPG  A TVDEAVA AE+ GYPVVVKAQVQVGGRGKAGGIKLAN+ADEVR +A +ILGMDIKGHVVKR+W+E ASDI EEYY SFTLDR AKKHLLMLS +GGVEIEAVAE++PDAI+  HVDPVDGIDLA ARQAA+D   PE++++G ADI+VKLY C+T+GDCDL EINPLILKPTGE+HALDAKV+L+ NAAFRHPEW+EY ATE LD REQMA++H LQYIGL+G+VGIIANGAGLAMSTLDVVNQVGG+A+NFLDIGGGA+AD+MAAALEVINFD++V SIFINIFGGITRGEEVAKGIVEA+GRV+LRAPIVIRLDGTNA EGRQI+ DAGIP  KL SKPTML+AA+AAVAIANGSK
Sbjct:    1 MDLFEYQGKQYFARYGIPVSPGATADTVDEAVAGAESIGYPVVVKAQVQVGGRGKAGGIKLANNADEVRRYATDILGMDIKGHVVKRLWIELASDIDEEYYVSFTLDRGAKKHLLMLSAQGGVEIEAVAESDPDAIVKLHVDPVDGIDLATARQAAVDAKLPERALDGAADIIVKLYDCFTKGDCDLTEINPLILKPTGEVHALDAKVTLEGNAAFRHPEWEEYAATEVLDEREQMAKKHGLQYIGLEGSVGIIANGAGLAMSTLDVVNQVGGAASNFLDIGGGADADMMAAALEVINFDESVKSIFINIFGGITRGEEVAKGIVEAMGRVELRAPIVIRLDGTNAEEGRQIIADAGIPADKLVSKPTMLDAAKAAVAIANGSK 384          
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Match: A0A6I2WW34_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=6 Tax=root TaxID=1 RepID=A0A6I2WW34_9ACTN)

HSP 1 Score: 610 bits (1573), Expect = 5.050e-218
Identity = 312/383 (81.46%), Postives = 343/383 (89.56%), Query Frame = 1
Query:    1 VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQVGGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEYYASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLAWARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGEIHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGTVGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFDQNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGRQILLDAGIPESKLTSKPTMLEAARAAVAIANGS 1149
            +DLFEYQGKQYFARF I VSPGGVA  VD+AV  AE AGYPVVVKAQVQVGGRGKAGGIKLAN+ADEVRLHAGNILGMDIKGH+VKR+WVE+ASDI EEYYASFTLDRAAKKHLLMLS +GGVEIE  AE +PDAI++ H+DPV G+  A A +A +D     +++ G A++LVKLY C+TEGDCDLAEINPLIL+P G +HALDAKVSLDNNAAFRHPEWDEYRATEELD REQ+AR HDLQYIGL+G VGIIANGAGLAMSTLDVVNQVGG AANFLDIGGGANADVM AALEVINFD++V SIFINIFGGITRGEEVAKGIV+ALGRV+LRAPIVIRLDGTNA EGR+IL  AGIPESKL SKPTMLEAARAAVA+A G+
Sbjct:    1 MDLFEYQGKQYFARFGIAVSPGGVADAVDQAVTVAEQAGYPVVVKAQVQVGGRGKAGGIKLANNADEVRLHAGNILGMDIKGHLVKRIWVEHASDIVEEYYASFTLDRAAKKHLLMLSAQGGVEIEVTAEKDPDAIIMLHIDPVFGLSAAEAHKACVDAKINPKAVVGAAEMLVKLYECFTEGDCDLAEINPLILRPDGGVHALDAKVSLDNNAAFRHPEWDEYRATEELDEREQLARTHDLQYIGLEGNVGIIANGAGLAMSTLDVVNQVGGKAANFLDIGGGANADVMTAALEVINFDKDVKSIFINIFGGITRGEEVAKGIVQALGRVELRAPIVIRLDGTNAEEGREILKSAGIPESKLISKPTMLEAARAAVALAKGN 383          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20971.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3WMX4_9ACTN6.390e-22886.42Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A6I3EU16_9ACTN7.360e-22584.07Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A524B599_9ACTN5.820e-22483.77Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A4V3EIZ2_9ACTN1.170e-22383.29Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A6L6BLY0_9ACTN4.770e-22384.03Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A539DY24_9ACTN5.420e-22384.07Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A094PIX2_9ACTN7.320e-22284.47Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
UPI000E341B6A5.290e-22083.29ADP-forming succinate--CoA ligase subunit beta n=1... [more]
A0A2G6KA74_9ACTN4.500e-21981.25Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A6I2WW34_9ACTN5.050e-21881.46Succinate--CoA ligase [ADP-forming] subunit beta n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20971contigP-wetherbeei_contig20971:33..1187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_36100
Preferred namesucC
PFAMsATP-grasp_2,Ligase_CoA
Model size1155
Max annot lvl84992|Acidimicrobiia
KEGG rclassRC00004,RC00014
KEGG koko:K01903
KEGG ReactionR00405,R02404
KEGG Pathwayko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00173,M00374,M00620
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.61e-217
EggNOG OGsCOG0045@1|root,COG0045@2|Bacteria,2GKSB@201174|Actinobacteria,4CMVM@84992|Acidimicrobiia
EC6.2.1.5
DescriptionSuccinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
Cds size1155
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186213.0426934-CDS-P-wetherbeei_contig20971:32..11871683186213.0426934-CDS-P-wetherbeei_contig20971:32..1187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20971 33..1187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20971.1.1prot_P-wetherbeei_contig20971.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20971 33..1187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20971.1.1

>prot_P-wetherbeei_contig20971.1.1 ID=prot_P-wetherbeei_contig20971.1.1|Name=mRNA_P-wetherbeei_contig20971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=385bp
VDLFEYQGKQYFARFDIPVSPGGVAYTVDEAVAAAEAAGYPVVVKAQVQV
GGRGKAGGIKLANDADEVRLHAGNILGMDIKGHVVKRVWVENASDIAEEY
YASFTLDRAAKKHLLMLSKEGGVEIEAVAETNPDAILLRHVDPVDGIDLA
WARQAAIDNDFPEQSIEGVADILVKLYRCYTEGDCDLAEINPLILKPTGE
IHALDAKVSLDNNAAFRHPEWDEYRATEELDPREQMAREHDLQYIGLDGT
VGIIANGAGLAMSTLDVVNQVGGSAANFLDIGGGANADVMAAALEVINFD
QNVTSIFINIFGGITRGEEVAKGIVEALGRVDLRAPIVIRLDGTNAAEGR
QILLDAGIPESKLTSKPTMLEAARAAVAIANGSK*
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mRNA from alignment at P-wetherbeei_contig20971:33..1187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20971.1.1 ID=mRNA_P-wetherbeei_contig20971.1.1|Name=mRNA_P-wetherbeei_contig20971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1155bp|location=Sequence derived from alignment at P-wetherbeei_contig20971:33..1187+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGACCTGTTCGAGTACCAGGGCAAGCAGTACTTCGCCCGATTCGACAT CCCGGTCAGTCCGGGTGGAGTCGCCTACACCGTGGACGAGGCCGTCGCTG CGGCCGAGGCCGCCGGTTACCCGGTGGTGGTGAAGGCGCAGGTGCAGGTG GGCGGTCGCGGCAAGGCGGGCGGCATCAAGCTGGCCAACGACGCCGACGA GGTGCGCCTGCACGCCGGGAACATCCTGGGCATGGACATCAAGGGGCACG TCGTCAAGCGGGTCTGGGTGGAGAACGCCAGCGACATCGCCGAGGAGTAC TACGCCTCGTTCACGCTGGACCGTGCCGCCAAGAAGCACCTGCTGATGTT GTCGAAGGAGGGCGGCGTCGAGATCGAGGCCGTCGCCGAGACCAACCCCG ACGCCATCCTGCTGCGCCACGTCGATCCGGTCGATGGCATCGACCTCGCA TGGGCCCGCCAGGCAGCCATCGACAACGACTTCCCGGAGCAGTCGATCGA GGGTGTCGCCGACATCCTCGTCAAGCTGTACCGCTGCTACACCGAGGGCG ACTGCGATCTGGCCGAGATCAATCCGTTGATCCTCAAGCCGACCGGCGAG ATCCACGCCCTGGACGCGAAGGTCAGCCTCGACAACAACGCGGCCTTCCG CCACCCCGAGTGGGACGAGTACCGCGCGACGGAAGAGCTCGACCCTCGCG AGCAGATGGCCCGCGAGCACGACCTGCAGTACATCGGCCTCGACGGCACC GTCGGCATCATCGCCAACGGCGCCGGTCTGGCGATGAGCACGCTCGACGT CGTCAACCAGGTCGGTGGCTCCGCGGCCAACTTCCTCGACATCGGCGGCG GCGCGAACGCCGACGTGATGGCCGCTGCCCTGGAGGTCATCAACTTCGAC CAGAACGTGACGAGCATCTTCATCAACATCTTCGGTGGCATCACCCGCGG CGAGGAAGTCGCCAAGGGCATCGTCGAGGCGCTCGGCCGGGTGGACCTGC GGGCCCCGATCGTCATCCGCCTCGACGGCACGAACGCCGCCGAAGGTCGT CAGATCCTCCTCGATGCGGGCATCCCCGAATCGAAGCTCACCTCCAAGCC CACCATGCTCGAAGCCGCACGCGCGGCCGTCGCCATCGCAAACGGGAGCA AGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20971:33..1187+

>mRNA_P-wetherbeei_contig20971.1.1 ID=mRNA_P-wetherbeei_contig20971.1.1|Name=mRNA_P-wetherbeei_contig20971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1155bp|location=Sequence derived from alignment at P-wetherbeei_contig20971:33..1187+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGACCTGTTCGAGTACCAGGGCAAGCAGTACTTCGCCCGATTCGACAT
CCCGGTCAGTCCGGGTGGAGTCGCCTACACCGTGGACGAGGCCGTCGCTG
CGGCCGAGGCCGCCGGTTACCCGGTGGTGGTGAAGGCGCAGGTGCAGGTG
GGCGGTCGCGGCAAGGCGGGCGGCATCAAGCTGGCCAACGACGCCGACGA
GGTGCGCCTGCACGCCGGGAACATCCTGGGCATGGACATCAAGGGGCACG
TCGTCAAGCGGGTCTGGGTGGAGAACGCCAGCGACATCGCCGAGGAGTAC
TACGCCTCGTTCACGCTGGACCGTGCCGCCAAGAAGCACCTGCTGATGTT
GTCGAAGGAGGGCGGCGTCGAGATCGAGGCCGTCGCCGAGACCAACCCCG
ACGCCATCCTGCTGCGCCACGTCGATCCGGTCGATGGCATCGACCTCGCA
TGGGCCCGCCAGGCAGCCATCGACAACGACTTCCCGGAGCAGTCGATCGA
GGGTGTCGCCGACATCCTCGTCAAGCTGTACCGCTGCTACACCGAGGGCG
ACTGCGATCTGGCCGAGATCAATCCGTTGATCCTCAAGCCGACCGGCGAG
ATCCACGCCCTGGACGCGAAGGTCAGCCTCGACAACAACGCGGCCTTCCG
CCACCCCGAGTGGGACGAGTACCGCGCGACGGAAGAGCTCGACCCTCGCG
AGCAGATGGCCCGCGAGCACGACCTGCAGTACATCGGCCTCGACGGCACC
GTCGGCATCATCGCCAACGGCGCCGGTCTGGCGATGAGCACGCTCGACGT
CGTCAACCAGGTCGGTGGCTCCGCGGCCAACTTCCTCGACATCGGCGGCG
GCGCGAACGCCGACGTGATGGCCGCTGCCCTGGAGGTCATCAACTTCGAC
CAGAACGTGACGAGCATCTTCATCAACATCTTCGGTGGCATCACCCGCGG
CGAGGAAGTCGCCAAGGGCATCGTCGAGGCGCTCGGCCGGGTGGACCTGC
GGGCCCCGATCGTCATCCGCCTCGACGGCACGAACGCCGCCGAAGGTCGT
CAGATCCTCCTCGATGCGGGCATCCCCGAATCGAAGCTCACCTCCAAGCC
CACCATGCTCGAAGCCGCACGCGCGGCCGTCGCCATCGCAAACGGGAGCA
AGTGA
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