mRNA_P-wetherbeei_contig20953.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20953.2.1
Unique NamemRNA_P-wetherbeei_contig20953.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: UPI0004880545 (calcium-binding protein n=1 Tax=Enterovibrio calviensis TaxID=91359 RepID=UPI0004880545)

HSP 1 Score: 53.9 bits (128), Expect = 4.530e-6
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  154 ADTFEFFVVAWPNGDTEGNDRILDFQDGVDHIHLRGSVD-GMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDF 390
            ADTF F  +    G+  GNDRI+DF+ G+D I +R + D     ++LTQVG +TL+     G S  L G+ A  +TA DF
Sbjct:  127 ADTFRFDNIL---GNQTGNDRIVDFEVGIDSIFIRATGDTDFDSLSLTQVGSNTLVDLAD-GSSFILNGITATDLTADDF 202          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: UPI001EE1F6A1 (calcium-binding protein n=1 Tax=Mesobacterium pallidum TaxID=2872037 RepID=UPI001EE1F6A1)

HSP 1 Score: 54.7 bits (130), Expect = 5.090e-6
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  196 DTEGNDRILDFQDGVDHIHLRG----SVDGMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDFDF 396
            D  G D I DF+DG+D +   G     V G  ++ +TQVG DTL+T++    +LTL GV+A SI A DF F
Sbjct:  401 DRAGYDTITDFEDGIDLVDGTGLGPLGVTGFGDLVITQVGADTLVTFNDYN-ALTLAGVDAASIGADDFLF 470          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: UPI00131C85F5 (hypothetical protein n=1 Tax=Chachezhania sediminis TaxID=2599291 RepID=UPI00131C85F5)

HSP 1 Score: 53.9 bits (128), Expect = 9.370e-6
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  178 VAWPNGDTEGNDRILDFQDGVDHIHLRGSVDGMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDFDF 396
            V  P+G   GND I  F+DG D I + G+ +  + +T+ +  GD LI YDG  G++TL+G  A ++TASDF F
Sbjct:  385 VFGPHG---GNDAIRGFKDGKDRIKIVGTGESFASLTIEKDAGDLLIDYDG--GTITLLGDAATTLTASDFIF 452          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: UPI00140DE1FB (calcium-binding protein n=1 Tax=Rhodobacter sp. M37P TaxID=2715277 RepID=UPI00140DE1FB)

HSP 1 Score: 53.9 bits (128), Expect = 9.520e-6
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  157 DTFEFFVVAWPNGDTEGNDRILDFQDGVDHIHLRGSVDGMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDFDF 396
            DTF F + A       G D + DFQ+G+D + +RG    ++++T+ Q G +T+++  G+   +TL+GV AG I ASDF F
Sbjct:  423 DTFVFRLRA-------GADTVEDFQNGLDRLDVRGLAASLADVTVAQSGANTVLSAGGV--QITLIGVAAGQIDASDFLF 493          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: A0A8J7M9Q5_9RHOB (M10 family metallopeptidase C-terminal domain-containing protein n=1 Tax=Thermohalobaculum xanthum TaxID=2753746 RepID=A0A8J7M9Q5_9RHOB)

HSP 1 Score: 52.4 bits (124), Expect = 1.410e-5
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  196 DTEGNDRILDFQDGVDHIHLRG--SVDGMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDFDF 396
            D +GND ILDF+DG+D I   G   V G  ++ ++  GG +L+T   +  S+ + GV  G +TA DF F
Sbjct:  118 DLDGNDTILDFEDGIDLIQFDGITGVAGFGDLVISASGGGSLVTAGSV--SVLVAGVATGDLTADDFSF 184          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: A0A562NRX5_9RHOB (Hemolysin type calcium-binding protein n=1 Tax=Paracoccus sulfuroxidans TaxID=384678 RepID=A0A562NRX5_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 1.920e-5
Identity = 28/67 (41.79%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  205 GNDRILDFQDGVDHIHLRGSVDGMSEMTLTQVGGD---TLITYDGIGGSLTLVGVNAGSITASDFDF 396
            GNDR+ DFQDG+D + +R   +  S++ +T    +   T++T+ G   ++TLVGV+  +ITASDF+F
Sbjct:  888 GNDRVTDFQDGIDRVVIRTGAENFSQVNVTYDPNNYSNTVLTFGGT--TVTLVGVSYWNITASDFEF 952          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: A0A2E2PBE4_9RHOB (Uncharacterized protein n=1 Tax=Pseudooceanicola sp. TaxID=1914328 RepID=A0A2E2PBE4_9RHOB)

HSP 1 Score: 52.8 bits (125), Expect = 2.440e-5
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  154 ADTFEFFVVAWPNGDTEGNDRILDFQDGVDHIHLRGSVDGMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDFDF 396
            ADTF F  +A      EG DRI+ FQDG+DHI + GS    +++      G  L+T +G G  + L G+  G +T +DFDF
Sbjct:  466 ADTFVFDGLA-----DEGRDRIIGFQDGIDHIRVTGSSFANTQIDSFGANG-ALVTLEG-GTEIVLKGITPGQLTHADFDF 539          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: A0A1H1IR52_9HYPH (Hemolysin-type calcium-binding repeat-containing protein n=1 Tax=Pseudovibrio sp. Tun.PSC04-5.I4 TaxID=1798213 RepID=A0A1H1IR52_9HYPH)

HSP 1 Score: 52.8 bits (125), Expect = 2.480e-5
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1
Query:  205 GNDRILDFQDGVDHIHLRGSVDGMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDFDF 396
            GND I DF DGVD I          ++T++ VG D +ITY+G    +T+ GV+A  +   DF F
Sbjct:  541 GNDEITDFTDGVDFIEFESGATSFEDLTISSVGSDAVITYEG--SVITVTGVDASLLGVDDFAF 602          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: A0A3M1T9G4_9CYAN (Calcium-binding protein n=1 Tax=Cyanobacteria bacterium J055 TaxID=2420338 RepID=A0A3M1T9G4_9CYAN)

HSP 1 Score: 52.0 bits (123), Expect = 4.370e-5
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  202 EGNDRILDFQDGVDHIHLRGSVDGMS--EMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDF 390
            +GN+ + DF DGVD I LR   DG++  E+T+ QVG DT+IT  G+  S+ L GVN G I+ +DF
Sbjct:  382 DGNNFVTDFTDGVDIIGLR---DGLTFAELTIVQVGNDTVITAAGL--SIALQGVNIGIISEADF 441          
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Match: A0A368YNE8_9RHOB (Hemolysin type calcium-binding protein n=2 Tax=Paracoccus lutimaris TaxID=1490030 RepID=A0A368YNE8_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 4.770e-5
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  205 GNDRILDFQDGVDHIHLRGSV--DGMSEMTLTQVGGDTLITYDGIGGSLTLVGVNAGSITASDFDF 396
            G+D+I  +++G DHI +RG    D  S++T+  VGG  ++++ G   S+TLVGV+   + ASDF F
Sbjct:  752 GSDQIRGWENGSDHIVIRGGTTYDEFSDLTIRSVGGHAVVSFGGT--SITLVGVSVAQVDASDFQF 815          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20953.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
UPI00048805454.530e-642.50calcium-binding protein n=1 Tax=Enterovibrio calvi... [more]
UPI001EE1F6A15.090e-645.07calcium-binding protein n=1 Tax=Mesobacterium pall... [more]
UPI00131C85F59.370e-643.84hypothetical protein n=1 Tax=Chachezhania sedimini... [more]
UPI00140DE1FB9.520e-638.75calcium-binding protein n=1 Tax=Rhodobacter sp. M3... [more]
A0A8J7M9Q5_9RHOB1.410e-540.58M10 family metallopeptidase C-terminal domain-cont... [more]
A0A562NRX5_9RHOB1.920e-541.79Hemolysin type calcium-binding protein n=1 Tax=Par... [more]
A0A2E2PBE4_9RHOB2.440e-540.74Uncharacterized protein n=1 Tax=Pseudooceanicola s... [more]
A0A1H1IR52_9HYPH2.480e-540.63Hemolysin-type calcium-binding repeat-containing p... [more]
A0A3M1T9G4_9CYAN4.370e-549.23Calcium-binding protein n=1 Tax=Cyanobacteria bact... [more]
A0A368YNE8_9RHOB4.770e-540.91Hemolysin type calcium-binding protein n=2 Tax=Par... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20953contigP-wetherbeei_contig20953:786..1190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog911045.PSE_2221
PFAMsHCBP_related,HemolysinCabind,PPC,P_proprotein,Peptidase_M10_C,Peptidase_S8,Reprolysin_4
Model size405
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01406
KEGG Pathwayko01503,map01503
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.15e-06
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria
EC3.4.24.40
DescriptionCOG2931 RTX toxins and related Ca2 -binding proteins
Cds size405
COG categoryQ
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.775145-CDS-P-wetherbeei_contig20953:785..11901683186212.775145-CDS-P-wetherbeei_contig20953:785..1190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20953 786..1190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20953.2.1prot_P-wetherbeei_contig20953.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20953 786..1190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20953.2.1

>prot_P-wetherbeei_contig20953.2.1 ID=prot_P-wetherbeei_contig20953.2.1|Name=mRNA_P-wetherbeei_contig20953.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
LKGRDGDDTLDGGGGRDTLRGEEGNDTLLGGSGNDVLVGGDGDDTLAGGL
DADTFEFFVVAWPNGDTEGNDRILDFQDGVDHIHLRGSVDGMSEMTLTQV
GGDTLITYDGIGGSLTLVGVNAGSITASDFDFFG*
back to top

mRNA from alignment at P-wetherbeei_contig20953:786..1190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20953.2.1 ID=mRNA_P-wetherbeei_contig20953.2.1|Name=mRNA_P-wetherbeei_contig20953.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig20953:786..1190- (Phaeothamnion wetherbeei SAG_119_79)
CTTAAAGGCAGGGATGGCGACGATACGCTCGATGGCGGCGGCGGCCGGGA TACTCTCCGGGGTGAGGAAGGCAACGACACCCTGCTTGGCGGCTCCGGCA ACGACGTGCTCGTCGGCGGCGACGGCGACGACACGCTGGCGGGTGGGCTC GATGCCGACACCTTCGAGTTTTTCGTGGTCGCCTGGCCCAACGGCGACAC CGAGGGCAACGACCGCATCCTCGACTTCCAGGATGGTGTCGATCACATCC ATCTCAGGGGAAGCGTGGACGGCATGTCGGAGATGACCCTCACGCAGGTC GGAGGCGACACGCTCATCACCTACGACGGCATCGGCGGGTCGCTGACGCT TGTTGGCGTCAACGCCGGCTCGATCACTGCCAGCGATTTTGATTTCTTCG GATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20953:786..1190-

>mRNA_P-wetherbeei_contig20953.2.1 ID=mRNA_P-wetherbeei_contig20953.2.1|Name=mRNA_P-wetherbeei_contig20953.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig20953:786..1190- (Phaeothamnion wetherbeei SAG_119_79)
CTTAAAGGCAGGGATGGCGACGATACGCTCGATGGCGGCGGCGGCCGGGA
TACTCTCCGGGGTGAGGAAGGCAACGACACCCTGCTTGGCGGCTCCGGCA
ACGACGTGCTCGTCGGCGGCGACGGCGACGACACGCTGGCGGGTGGGCTC
GATGCCGACACCTTCGAGTTTTTCGTGGTCGCCTGGCCCAACGGCGACAC
CGAGGGCAACGACCGCATCCTCGACTTCCAGGATGGTGTCGATCACATCC
ATCTCAGGGGAAGCGTGGACGGCATGTCGGAGATGACCCTCACGCAGGTC
GGAGGCGACACGCTCATCACCTACGACGGCATCGGCGGGTCGCTGACGCT
TGTTGGCGTCAACGCCGGCTCGATCACTGCCAGCGATTTTGATTTCTTCG
GATGA
back to top