mRNA_P-wetherbeei_contig20953.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20953.1.1
Unique NamemRNA_P-wetherbeei_contig20953.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20953.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20953contigP-wetherbeei_contig20953:308..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog316055.RPE_3531
Model size252
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.2e-08
EggNOG OGs2ADHU@1|root,318QI@2|Bacteria,1NPPA@1224|Proteobacteria,2UN7K@28211|Alphaproteobacteria,3K1V5@41294|Bradyrhizobiaceae
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.7454472-CDS-P-wetherbeei_contig20953:307..5591683186212.7454472-CDS-P-wetherbeei_contig20953:307..559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20953 308..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20953.1.1prot_P-wetherbeei_contig20953.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20953 308..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20953.1.1

>prot_P-wetherbeei_contig20953.1.1 ID=prot_P-wetherbeei_contig20953.1.1|Name=mRNA_P-wetherbeei_contig20953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MKRLVTVAALAAGVFAVTPASAKMTCSSADMAKMNTMMAGMADGPNKMAM
MQEYSTANAAMVKGDMRACNKSVAKIEKMSATK*
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mRNA from alignment at P-wetherbeei_contig20953:308..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20953.1.1 ID=mRNA_P-wetherbeei_contig20953.1.1|Name=mRNA_P-wetherbeei_contig20953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig20953:308..559+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGATTGGTTACCGTGGCCGCGCTCGCAGCCGGCGTTTTCGCCGT
CACTCCGGCTTCCGCCAAGATGACATGCTCGTCGGCCGATATGGCGAAAA
TGAACACGATGATGGCGGGCATGGCTGACGGCCCGAACAAGATGGCGATG
ATGCAGGAGTACAGCACGGCCAACGCGGCCATGGTGAAGGGCGACATGCG
CGCCTGCAACAAGTCGGTGGCGAAGATCGAAAAGATGTCGGCGACGAAGT
AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20953:308..559+

>mRNA_P-wetherbeei_contig20953.1.1 ID=mRNA_P-wetherbeei_contig20953.1.1|Name=mRNA_P-wetherbeei_contig20953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig20953:308..559+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGATTGGTTACCGTGGCCGCGCTCGCAGCCGGCGTTTTCGCCGT
CACTCCGGCTTCCGCCAAGATGACATGCTCGTCGGCCGATATGGCGAAAA
TGAACACGATGATGGCGGGCATGGCTGACGGCCCGAACAAGATGGCGATG
ATGCAGGAGTACAGCACGGCCAACGCGGCCATGGTGAAGGGCGACATGCG
CGCCTGCAACAAGTCGGTGGCGAAGATCGAAAAGATGTCGGCGACGAAGT
AA
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