mRNA_P-wetherbeei_contig20937.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A3N9VCB9_9DELT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Geobacter sp. TaxID=46610 RepID=A0A3N9VCB9_9DELT) HSP 1 Score: 214 bits (545), Expect = 2.520e-64 Identity = 108/208 (51.92%), Postives = 141/208 (67.79%), Query Frame = 1
Query: 100 SAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQEGGRRNK 723
+A V +G+ +IRSPI GRTG L + +G LV+AN L+TI++I PI V+F+VPEK L EI + L VEA P E+G+++F++N VD TTGTI ++ F N RRLWPG+FV V L L +PNA++VP+HAVQ GQ G +VFVVK D+TVE RPV TY + ++I+ GL GETVVTDGQLQL+PG V G K
Sbjct: 174 NAAVMLGYCFIRSPIDGRTGNLMVQQGNLVKANDVPILVTINQINPIYVTFSVPEKELAEINKHMAAGDLKVEALIPSDTGPAEQGIISFLDNMVDPTTGTIKIKGTFANRQRRLWPGQFVNVVLTLASIPNAVIVPAHAVQTGQDGLFVFVVKPDRTVEFRPVVTGVTYYNDTVIEKGLNDGETVVTDGQLQLSPGTRVTFGSENVK 381
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: Q39V42_GEOMG (Efflux pump, RND family, membrane fusion lipoprotein n=2 Tax=Geobacter TaxID=28231 RepID=Q39V42_GEOMG) HSP 1 Score: 213 bits (541), Expect = 1.690e-63 Identity = 109/216 (50.46%), Postives = 146/216 (67.59%), Query Frame = 1
Query: 91 AAASAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQEGGRRNKKGPGS 738
A +A V++ + +IRSP+ GRTG L + G +V+AN PL+TI++ITP+ V+F++PEK L E++R LAVEA P+ E+G+++F++NTVD TGTI L+ F N RRLWPG+F V + L PNAIVVP+ A+Q GQSG YVFVVK D +VE+RPVT Y +II+ GL GE VVTDGQ++LTP A V E K GPG+
Sbjct: 177 AVENAKVELSYCFIRSPLTGRTGNLAVHAGNIVKANENPPLVTINQITPVYVAFSIPEKDLAEVKRRMAAGKLAVEATIPNDAGPAEQGMISFLDNTVDVATGTIKLKGTFENRARRLWPGQFANVVVTLAARPNAIVVPAQAIQTGQSGPYVFVVKADSSVEIRPVTPGIAYEGVTIIEQGLAPGERVVTDGQMRLTPKARVTE-----KPGPGT 387
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A2V9R140_9BACT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9R140_9BACT) HSP 1 Score: 212 bits (540), Expect = 3.170e-63 Identity = 111/227 (48.90%), Postives = 148/227 (65.20%), Query Frame = 1
Query: 22 EATVQADMASXXXXXXXXXXXXXAAASAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQ 702
+AT+QAD AS A +A +Q+G+ IRSP+ GRTG L + +G +V+AN + PL+ I++I P+ +F+VPE+YL EI++ LAV A P ++ +GV+ FI+NTVD TTGTI L+ F N + LWPG+FV V L L PN +VVPS AVQ GQ+G YVFVVK D TVE RPV + + +I+ GLK GETVV DGQL+LTPGA V+
Sbjct: 179 DATIQADKASLEYSSAAIRSDKAAIENAKLQLGYCTIRSPMDGRTGNLIVHQGNIVKANDSPPLVIINQIQPMYATFSVPEQYLSEIKKHMAAGKLAVAATPPKEETNAVQGVLTFIDNTVDNTTGTIRLKGTFANREKHLWPGQFVNVVLTLSTQPNTVVVPSRAVQTGQTGQYVFVVKPDLTVESRPVVIGTSLSSEVVIERGLKPGETVVIDGQLRLTPGAKVE 405
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A7V3XEC6_9BACT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3XEC6_9BACT) HSP 1 Score: 212 bits (539), Expect = 5.080e-63 Identity = 112/211 (53.08%), Postives = 146/211 (69.19%), Query Frame = 1
Query: 109 VQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQEGGRRNKKGPGST 741
+Q+G+T IRSPI GRTG L + +G LV+AN T L+ I +I+PI V+F+VPE+ L EIR+ L VEA P+ ++ P KGV+ F++NTVD TTGTI L+ F N +RLWPG+FV V L L PNA+V PS A+Q GQ G YVFV+K D TVE RPV V T+GD ++I+ GL+ GE VVTDGQL+L PG V+ K GPG++
Sbjct: 214 LQLGYTSIRSPIDGRTGDLMVHQGNLVKANDTV-LVAIHQISPIYVTFSVPEQELPEIRKYMAAGKLEVEAIVPNEEAHPVKGVITFVDNTVDRTTGTIQLKGTFDNEEKRLWPGQFVNVVLTLTTQPNAVVAPSQAIQNGQEGQYVFVIKPDLTVESRPVVVARTFGDETVIERGLQPGEKVVTDGQLRLAPGVKVEV-----KNGPGNS 418
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A354CYP5_9BACT (Efflux RND transporter periplasmic adaptor subunit (Fragment) n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A354CYP5_9BACT) HSP 1 Score: 204 bits (520), Expect = 1.800e-62 Identity = 108/227 (47.58%), Postives = 147/227 (64.76%), Query Frame = 1
Query: 22 EATVQADMASXXXXXXXXXXXXXAAASAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQ 702
EA VQAD A A +A VQ+G+ YI S + GRTG+L + EG LV+ N TPL+ I++++PI V+F+VPE++L EI++ L V+A P + E+GVV+F++N VD TTGTI L+ F N +RRLWPG+FV + L P+A+VVP+ AVQ GQ G +VFVV +KT E+R V V+ T ++I+ GLK GETVVTDGQ QL PG V+
Sbjct: 17 EAVVQADKA--------------AVENAKVQLGYCYIYSSVTGRTGSLLVSEGNLVRVNDATPLLVINQVSPIYVNFSVPEQHLSEIKKRMASGQLKVDAIFPQNEDLGEQGVVSFVDNAVDRTTGTIRLKGTFANSSRRLWPGQFVNALVTLATQPDAVVVPAQAVQAGQDGQHVFVVTSEKTAELRKVVVNRTVDGEAVIEEGLKPGETVVTDGQFQLAPGVKVE 229
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A7C3RPI4_9BACT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C3RPI4_9BACT) HSP 1 Score: 204 bits (520), Expect = 5.950e-62 Identity = 101/203 (49.75%), Postives = 137/203 (67.49%), Query Frame = 1
Query: 91 AAASAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASV 699
A +A V + +T I SPI GRTG L + G LV+AN+ T ++TI++I P+ V F++PEK L ++R PL V P K E+G ++FI+N VD+TTGTI+L+ F N RLWPG+FV VTL++RR+P+ +VVPS AVQ GQ G YVFVV + E+R V + T G +++ GLK GETVVTDGQL+L PGA+V
Sbjct: 60 AVQTAQVNLSYTRIHSPIDGRTGNLIVHAGNLVKANADTAMVTINQIRPVYVDFSIPEKDLDQVRANMAEHPLPVFVTTPTDKDERERGYLSFIDNQVDSTTGTILLKGTFKNANERLWPGQFVNVTLIVRRMPDQVVVPSQAVQTGQDGSYVFVVGEKMKAEMRKVVLGATVGGDTVVARGLKAGETVVTDGQLRLVPGATV 262
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A1F9CDM3_9DELT (Efflux transporter periplasmic adaptor subunit n=1 Tax=Deltaproteobacteria bacterium RBG_16_64_85 TaxID=1797846 RepID=A0A1F9CDM3_9DELT) HSP 1 Score: 207 bits (527), Expect = 7.510e-62 Identity = 107/204 (52.45%), Postives = 142/204 (69.61%), Query Frame = 1
Query: 91 AAASAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQ 702
A +A VQ+ + YIRSPI GRTGTL I EG +V+AN +T L+TI+++TPI ++F+VPE+YL IR+ ++ L VEA P + P +G + FI N VD TGTI L+ FPN RRLWPG FV VTL+L P A++VP+ AVQ GQSG Y+FVV+ D TVE RPV T ++I+ G++ GE VVTDGQL+L PG+ V+
Sbjct: 159 AVENARVQLSYCYIRSPIDGRTGTLFIKEGNVVKANDST-LVTINQVTPIYITFSVPEQYLAGIRKYREARTLGVEAVIPGQEDQPVRGALTFISNAVDNATGTIQLKGTFPNQDRRLWPGGFVNVTLILATKPKAVLVPASAVQTGQSGQYIFVVRPDLTVESRPVVTGETGAGETVIEKGVQAGERVVTDGQLRLVPGSRVE 361
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A6I1KH69_9DELT (Putative multidrug efflux transporter n=1 Tax=Geobacteraceae bacterium TaxID=2282154 RepID=A0A6I1KH69_9DELT) HSP 1 Score: 207 bits (527), Expect = 1.380e-61 Identity = 110/218 (50.46%), Postives = 148/218 (67.89%), Query Frame = 1
Query: 100 SAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQ-----EGGRRNKKGPGS 738
+A + + + IRSPI GRTG L + G LV+AN L+TI++I P+ V+F+VPEK L EI++ L VEA P+ A E+GV++F++NTVDT TGTI L+ FPN TRRLWPG+FV V L L P A+VVP+ A+Q GQ G Y+FVVK D++V++RPVTV ++I+ G++ GETVVTDGQL+LTPGA V+ G R K+ GS
Sbjct: 157 NARLLLAYCSIRSPIDGRTGNLMVQMGNLVKANDNPVLVTINQINPVYVTFSVPEKELLEIKKYLAGGSLHVEAVIPNDPKAAEEGVISFLDNTVDTATGTIKLKGTFPNKTRRLWPGQFVNVVLTLAAKPKAVVVPTQAIQTGQQGAYLFVVKADRSVDIRPVTVGTALNGETVIEKGVQPGETVVTDGQLRLTPGAKVEFRQGAGNGNREKREAGS 374
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A2V8TZV2_9BACT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8TZV2_9BACT) HSP 1 Score: 209 bits (532), Expect = 1.840e-61 Identity = 113/219 (51.60%), Postives = 152/219 (69.41%), Query Frame = 1
Query: 97 ASAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQEGGRRNKKGPGSTGLPG 753
A+A VQ+G+T IRSPI GRTG L + +G +V AN T+ LITI++I PI V+FAVPE L EI+R + L V A + D ++ PE+G + F++N VD TTGTI L+ F N+ +LWPG++V VTL L PNA+VVP+ AVQ GQ+G +V+VVK+D+TVEVRPV+ +I+ GL GETVVT+GQL+L PG+ VQ R+K+G G PG
Sbjct: 255 ANAKVQLGYTSIRSPIDGRTGNLMVKQGNVVTAN-TSDLITINQIEPIYVTFAVPEVRLPEIKRYMAQGKLPVIAKSQDSEAQPEQGHLTFVDNNVDMTTGTIKLKGTFQNVGHKLWPGQYVNVTLRLTTQPNALVVPNQAVQSGQNGQFVYVVKEDRTVEVRPVSTGARVDQDLVIENGLDAGETVVTEGQLRLAPGSRVQLRDSRDKQGQGRGKAPG 472
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Match: A0A1F9A9E0_9DELT (Efflux transporter periplasmic adaptor subunit (Fragment) n=1 Tax=Deltaproteobacteria bacterium GWD2_55_8 TaxID=1797823 RepID=A0A1F9A9E0_9DELT) HSP 1 Score: 202 bits (515), Expect = 2.740e-61 Identity = 110/227 (48.46%), Postives = 145/227 (63.88%), Query Frame = 1
Query: 22 EATVQADMASXXXXXXXXXXXXXAAASAGVQVGFTYIRSPIKGRTGTLNIFEGTLVQANSTTPLITIDEITPIRVSFAVPEKYLGEIRRGQQRSPLAVEAANPDGKSAPEKGVVNFIENTVDTTTGTIILRADFPNLTRRLWPGEFVTVTLLLRRVPNAIVVPSHAVQPGQSGDYVFVVKDDKTVEVRPVTVDFTYGDSSIIKTGLKKGETVVTDGQLQLTPGASVQ 702
EA VQAD A A +A VQ+G+ YI S + GRTG+L + EG LV+ N TPL+ I++++PI V+F +PE+ L EI++ L V+A P ++ E+G + F++N VD TTGTI L+A F N RRLWPG FV V + L P+A+VVPS AVQ GQ G +VFVVK D+TVE+R V V+ T ++I GLK GETVVTDGQ QL PG V+
Sbjct: 49 EAVVQADKA--------------AVENAKVQLGYCYIYSSVTGRTGSLLVNEGNLVRVNDATPLLVINQVSPIYVNFTLPEQNLQEIKKRMAGGKLGVQAIIPRNEALDEQGALGFVDNAVDRTTGTIRLKATFANDARRLWPGAFVNVLVTLAMQPDAVVVPSQAVQTGQEGQHVFVVKSDQTVELRKVIVNRTVNSEAVIDEGLKPGETVVTDGQFQLAPGVKVE 261 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20937.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20937.1.1 >prot_P-wetherbeei_contig20937.1.1 ID=prot_P-wetherbeei_contig20937.1.1|Name=mRNA_P-wetherbeei_contig20937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp RASISSAEATVQADMASVRSLQSTVEADRAAAASAGVQVGFTYIRSPIKGback to top mRNA from alignment at P-wetherbeei_contig20937:378..1130- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20937.1.1 ID=mRNA_P-wetherbeei_contig20937.1.1|Name=mRNA_P-wetherbeei_contig20937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig20937:378..1130- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20937:378..1130- >mRNA_P-wetherbeei_contig20937.1.1 ID=mRNA_P-wetherbeei_contig20937.1.1|Name=mRNA_P-wetherbeei_contig20937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig20937:378..1130- (Phaeothamnion wetherbeei SAG_119_79)back to top |