mRNA_P-wetherbeei_contig2092.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2092.2.1
Unique NamemRNA_P-wetherbeei_contig2092.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2092.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2092contigP-wetherbeei_contig2092:3882..5068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1189
Hectar predicted targeting categoryother localisation
Exons1
Cds size834
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.1413972-UTR-P-wetherbeei_contig2092:3881..42341683186212.1413972-UTR-P-wetherbeei_contig2092:3881..4234Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2092 3882..4234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.1518638-CDS-P-wetherbeei_contig2092:4234..50681683186212.1518638-CDS-P-wetherbeei_contig2092:4234..5068Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2092 4235..5068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2092.2.1prot_P-wetherbeei_contig2092.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2092 4235..5068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2092.2.1

>prot_P-wetherbeei_contig2092.2.1 ID=prot_P-wetherbeei_contig2092.2.1|Name=mRNA_P-wetherbeei_contig2092.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=278bp
AAARRRFVPSRRAESLRGAARGGTARGGVDSLFERAAVSSFFAAAAGAAH
GRARVAAIHAEVDGAAAAAERRGTGGRSSFTSSSTASGVGSRPSASQPAA
EAAAGQPRTRAAGWAAGWAAAAAASTPEEDEIVWSPPPLQRRRALAAAQV
PAASSSASTVATATAAAASPPRDVINLVSPPSSTAASSEHGSVARASLSP
ALSPSSHSSVLRSSRGACSATAEAAAAAAAEEVQEVEPVVASGRRKRSRG
YSGSGGGGGAGSSSNSGTPSRSVRSRR*
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mRNA from alignment at P-wetherbeei_contig2092:3882..5068-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2092.2.1 ID=mRNA_P-wetherbeei_contig2092.2.1|Name=mRNA_P-wetherbeei_contig2092.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1187bp|location=Sequence derived from alignment at P-wetherbeei_contig2092:3882..5068- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCTGCTCGCAGGAGATTCGTGCCGTCGCGGCGAGCCGAGTCGCTGCG
CGGCGCCGCCCGCGGCGGCACCGCACGTGGTGGTGTCGACTCGCTGTTTG
AGCGGGCAGCGGTGTCATCCTTCTTTGCCGCCGCCGCCGGCGCCGCACAC
GGCCGCGCCCGCGTCGCAGCCATCCACGCGGAAGTTGATGGGGCGGCTGC
CGCCGCCGAGCGTCGGGGCACCGGCGGGCGTTCCTCATTCACGAGCAGCA
GCACAGCAAGTGGCGTCGGGAGCCGACCGAGCGCCTCCCAGCCGGCGGCG
GAGGCAGCGGCGGGGCAGCCACGGACCAGGGCGGCAGGGTGGGCAGCCGG
GTGGGCGGCGGCGGCGGCGGCGAGCACCCCGGAGGAGGATGAGATCGTCT
GGTCGCCACCACCGCTTCAGCGTCGGCGGGCGCTGGCGGCGGCTCAGGTG
CCCGCTGCCTCGTCTTCGGCGTCCACCGTGGCGACGGCGACGGCGGCGGC
AGCATCGCCGCCGAGGGACGTGATCAACCTCGTCAGCCCGCCGTCGTCGA
CGGCGGCGTCGTCGGAGCACGGTTCGGTCGCCCGCGCCTCTCTTTCCCCG
GCGCTGTCCCCGTCGTCGCACTCCTCTGTGTTGCGGTCGTCGCGGGGGGC
ATGTTCTGCCACGGCAGAGGCGGCTGCTGCGGCGGCAGCGGAAGAGGTGC
AGGAGGTGGAACCGGTGGTTGCGTCTGGGCGGCGGAAGCGCAGCCGGGGC
TACAGCGGCAGTGGCGGTGGCGGCGGCGCTGGTAGCAGCAGCAACAGCGG
GACACCATCCCGGTCGGTGCGATCCCGGCGGTAGCAGGAATGGCGGCGGC
GGCATTGACGGCAACGGCGGAAGCGGCGCATCTGCGTGCTGCACAGAAAG
TGTGGGATGGGGGAGCAGGCGCGGCGCAGACGGGAATGACCAGGGGCTTG
GGTGAGGGCTGGATGTGAAAGAGGAGGGAGGCCAGCGAAAGCGCCAGGCT
CCGGCAGGCTGTCATGCGGCTTTGTCCGTGATTCTCGCCGGATCTCTAGG
CTAAGATATTTCAGAAAGGGAAAACCTCTCTTTGGGCGGCTGTAGTGCAG
GAAAGTGCGGAGACATAAGCGTTGCATGGAAGGGATGGCAGGCCGGTTGG
AAAACAAACCAATGACAAACACGTACAACTTTGGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2092:3882..5068-

>mRNA_P-wetherbeei_contig2092.2.1 ID=mRNA_P-wetherbeei_contig2092.2.1|Name=mRNA_P-wetherbeei_contig2092.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig2092:3882..5068- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCTGCTCGCAGGAGATTCGTGCCGTCGCGGCGAGCCGAGTCGCTGCG
CGGCGCCGCCCGCGGCGGCACCGCACGTGGTGGTGTCGACTCGCTGTTTG
AGCGGGCAGCGGTGTCATCCTTCTTTGCCGCCGCCGCCGGCGCCGCACAC
GGCCGCGCCCGCGTCGCAGCCATCCACGCGGAAGTTGATGGGGCGGCTGC
CGCCGCCGAGCGTCGGGGCACCGGCGGGCGTTCCTCATTCACGAGCAGCA
GCACAGCAAGTGGCGTCGGGAGCCGACCGAGCGCCTCCCAGCCGGCGGCG
GAGGCAGCGGCGGGGCAGCCACGGACCAGGGCGGCAGGGTGGGCAGCCGG
GTGGGCGGCGGCGGCGGCGGCGAGCACCCCGGAGGAGGATGAGATCGTCT
GGTCGCCACCACCGCTTCAGCGTCGGCGGGCGCTGGCGGCGGCTCAGGTG
CCCGCTGCCTCGTCTTCGGCGTCCACCGTGGCGACGGCGACGGCGGCGGC
AGCATCGCCGCCGAGGGACGTGATCAACCTCGTCAGCCCGCCGTCGTCGA
CGGCGGCGTCGTCGGAGCACGGTTCGGTCGCCCGCGCCTCTCTTTCCCCG
GCGCTGTCCCCGTCGTCGCACTCCTCTGTGTTGCGGTCGTCGCGGGGGGC
ATGTTCTGCCACGGCAGAGGCGGCTGCTGCGGCGGCAGCGGAAGAGGTGC
AGGAGGTGGAACCGGTGGTTGCGTCTGGGCGGCGGAAGCGCAGCCGGGGC
TACAGCGGCAGTGGCGGTGGCGGCGGCGCTGGTAGCAGCAGCAACAGCGG
GACACCATCCCGGTCGGTGCGATCCCGGCGGTAG
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