mRNA_P-wetherbeei_contig2091.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2091.2.1
Unique NamemRNA_P-wetherbeei_contig2091.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A6H5L7X0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7X0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.660e-27
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = -1
Query:    1 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDV-RLSYRFDHRVDAVTPEMIRALSRPMQVHLFVSPALEA--PMQAITTAAADVRKRFE 327
            ++SP++L+G PW YRFEI+  ++LPL C  AYCQYE +G+TFTTETV+P  AS+   L+Y F HRVD VTPE++  LS+P+ V+ +V P +E   P   ITT    +  RFE
Sbjct:  475 IDSPKDLIGLPWAYRFEIKAGYNLPLTCASAYCQYELLGETFTTETVQPDPASNSPTLNYSFVHRVDKVTPEVVDQLSKPLNVYFYVGPHVEPEKPEDTITTKNPGLSARFE 586          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: D7G5B6_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 9.490e-27
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -1
Query:    1 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDV-RLSYRFDHRVDAVTPEMIRALSRPMQVHLFVSPALEA--PMQAITTAAADVRKRFE 327
            ++SP++L+G PW YRF+I+  ++LPL C  AYCQY+ +G+TFTTETV+P  AS+   L+Y F HRVD VTPE++  LS+P+ V+L+V P +E   P   ITT    +  RFE
Sbjct:  958 IDSPKDLIGLPWAYRFDIKAGYNLPLTCASAYCQYDLLGETFTTETVQPDPASNSPALNYSFVHRVDKVTPEVVDQLSKPLNVYLYVGPHVEPEKPEDTITTKNPGLSARFE 1069          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A835YS07_9STRA (Kinesin motor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS07_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.120e-21
Identity = 68/194 (35.05%), Postives = 93/194 (47.94%), Query Frame = -1
Query:    1 VDSVQAPYGEIGQLEAAWTLLPPPEPSVGADACSTMPVTATGDDKASSEGXXXXXXXXXXXXXXXAPAAIRAQALFVESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECM-GDTFTTETVEP--------GGASDVRLSYRFDHRVDAVTPEMIRALSRPMQVHLFVSPALEAPMQAITTAAADVRKRFE 555
            + + Q PY  IGQLE  WT L   E   GA A +   V  T +DK                               +E+PE+LLG+PW YRFEI+G   LP+ C  AYC+Y+ + G+T+TT+T E          G   V L+Y F H +D+ T  MI  L  P++V L VSP ++     +T+    VR  FE
Sbjct:  872 IKNAQEPYNAIGQLEVCWTPLLE-EYDAGAAAVNNEAVANTDNDKDFP---------------------------VIEAPEDLLGQPWTYRFEIKGARGLPVACSLAYCEYDWIDGETYTTDTTELTTPEAGQLAGDLPVALNYSFTHHIDSTTDAMIAQLGMPLRVRLHVSPQIQEASPHLTSTNDLVRCSFE 1037          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A662YI63_9STRA (Kinesin motor domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YI63_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.560e-15
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = -1
Query:   31 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDVRLSYRFDHRVDAVTPEMIRAL-SRPMQVHLFVSP-ALEAPMQAITT 327
            +ESP +LLGKPW ++  I G   LPL    AYCQYE +G+ FTTE+VE    S V  +Y F H VD VT + I  L S  ++  +FV+P  L+ P   I+T
Sbjct:  774 IESPSDLLGKPWTFKIRIVGATGLPLITDLAYCQYEFLGELFTTESVEQNTRSPV-FNYEFIHHVDCVTEQFIEYLQSARLEFQVFVNPYILDPPKDKIST 873          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A3R7HJ06_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HJ06_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.080e-15
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = -1
Query:   28 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDVRLSYRFDHRVDAVTPEMIRAL-SRPMQVHLFVSP-ALEAPMQAITTA 327
            VESP +LLGKPW ++  I G   LP+    AYCQYE +G+ FTTE+VE    S V  +Y F H VD VT + I  L S  ++  +FV+P  L+ P   I+T+
Sbjct:  883 VESPSDLLGKPWTFKLRIVGATGLPIITDLAYCQYEFLGELFTTESVEQNTRSPV-FNYEFIHHVDCVTEQFIEYLQSARLEFQVFVNPYILDPPKDKISTS 983          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A0W8DLN6_PHYNI (Transcription initiation factor TFIID subunit 13 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DLN6_PHYNI)

HSP 1 Score: 82.8 bits (203), Expect = 9.490e-15
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = -1
Query:   31 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDVRLSYRFDHRVDAVTPEMIRAL-SRPMQVHLFVSP-ALEAPMQAITT 327
            VESP +LLGKPW ++  I G   LP+    AYCQYE +G+ FTTE+VE    S V  +Y F H VD VT + I  L S  ++  +FV+P  L+ P   I+T
Sbjct:  811 VESPSDLLGKPWTFKIRIVGATGLPIITDLAYCQYEFLGELFTTESVEQNTRSPV-FNYEFIHHVDCVTEQFIEYLQSARLEFQVFVNPYILDPPKDKIST 910          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A662WZ07_9STRA (Kinesin motor domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZ07_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.550e-15
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = -1
Query:   31 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDVRLSYRFDHRVDAVTPEMIRAL-SRPMQVHLFVSP-ALEAPMQAITT 327
            VESP +LLGKPW ++  I G   LPL    AYCQYE  G+ FTTE+VE    S V  +Y F H VD VT + I  L S  ++  +FV+P  L+ P   I+T
Sbjct:  857 VESPSDLLGKPWTFKIRIVGATGLPLITDLAYCQYEFFGELFTTESVEQSTRSPV-FNYEFIHHVDCVTEQFIEYLQSARLEFQVFVNPYILDPPKDKIST 956          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: H3HDR7_PHYRM (4-aminobutyrate--2-oxoglutarate transaminase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDR7_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 9.770e-15
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = -1
Query:   31 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDVRLSYRFDHRVDAVTPEMIRAL-SRPMQVHLFVSP-ALEAPMQAITT 327
            VESP +LLGKPW ++  I G   LP+    AYCQYE +G+ FTTE+VE    S V  +Y F H VD VT + I  L S  ++  +FV+P  L+ P   I+T
Sbjct: 1380 VESPSDLLGKPWTFKIRIVGATGLPIITDLAYCQYEFLGELFTTESVEQNTRSPV-FNYEFIHHVDCVTDQFIEYLQSARLEFQVFVNPYILDPPKDKIST 1479          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A6A5AAB0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAB0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.840e-14
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = -1
Query:   28 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDVRLSYRFDHRVDAVTPEMIRAL-SRPMQVHLFVSP-ALEAPMQAITTA 327
            V+ P++L+GKPW Y+ EI+    LP+    AYCQYE +G+ FTTE+VE    +    +Y   H +  VTPE ++ L S  ++  LF++P  L+ P  AI+T+
Sbjct:  134 VDGPDDLVGKPWTYKLEIKQALGLPMITDLAYCQYEFLGEIFTTESVEQNTRNPA-FNYAHIHHIPCVTPEFVQYLQSHRLEFQLFINPYILDPPKDAISTS 234          
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Match: A0A225WAD2_9STRA (Kinesin motor domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WAD2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.680e-14
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = -1
Query:   31 VESPEELLGKPWGYRFEIEGCWHLPLKCQEAYCQYECMGDTFTTETVEPGGASDVRLSYRFDHRVDAVTPEMIRAL-SRPMQVHLFVSP-ALEAPMQAITT 327
            VESP +L+GKPW ++  I G   LP+    AYCQYE +G+ FTTE+VE    S V  +Y F H +D +T + I  L S  ++  +FV+P  L+ P   I+T
Sbjct:  866 VESPSDLVGKPWTFKVRIVGATGLPMITDLAYCQYEFLGELFTTESVEQNTRSPV-FNYEFIHHIDCITEQFIEYLQSARLEFQVFVNPYILDPPKDKIST 965          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2091.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5L7X0_9PHAE4.660e-2750.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5B6_ECTSI9.490e-2750.00Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835YS07_9STRA1.120e-2135.05Kinesin motor domain-containing protein n=1 Tax=Tr... [more]
A0A662YI63_9STRA6.560e-1545.54Kinesin motor domain-containing protein n=1 Tax=No... [more]
A0A3R7HJ06_9STRA7.080e-1545.10Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0W8DLN6_PHYNI9.490e-1545.54Transcription initiation factor TFIID subunit 13 n... [more]
A0A662WZ07_9STRA9.550e-1546.53Kinesin motor domain-containing protein n=1 Tax=No... [more]
H3HDR7_PHYRM9.770e-1545.544-aminobutyrate--2-oxoglutarate transaminase n=1 T... [more]
A0A6A5AAB0_9STRA2.840e-1440.20Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A225WAD2_9STRA5.680e-1442.57Kinesin motor domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2091contigP-wetherbeei_contig2091:4320..4957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size640
Hectar predicted targeting categoryother localisation
Exons1
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.7569263-CDS-P-wetherbeei_contig2091:4319..49551683186211.7569263-CDS-P-wetherbeei_contig2091:4319..4955Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2091 4320..4955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2091.2.1prot_P-wetherbeei_contig2091.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2091 4320..4955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2091.2.1

>prot_P-wetherbeei_contig2091.2.1 ID=prot_P-wetherbeei_contig2091.2.1|Name=mRNA_P-wetherbeei_contig2091.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
LEPLPHVGSGRGNGLHRCLECGAHKEVHLHRARQRPDHFRSHGVHAVIEA
VGQPHIAGATGLHRLGGEGVTHAFVLAVGLLALEGEMPATLDFEAVAPRL
AQQLLRRLHEQRLSANCSGCCRRRRFCCAVVAAGTALTAGFVVSGRCNRH
GAAGVGADAGLWRWQKRPCRLELPDFAVWSLHGINGRFDRDYHTISLDSS
CLAFEPFTPSEK
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mRNA from alignment at P-wetherbeei_contig2091:4320..4957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2091.2.1 ID=mRNA_P-wetherbeei_contig2091.2.1|Name=mRNA_P-wetherbeei_contig2091.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=638bp|location=Sequence derived from alignment at P-wetherbeei_contig2091:4320..4957+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGAACCGCTTCCGCACGTCGGCAGCGGCCGTGGTAATGGCCTGCATCG GTGCCTCGAGTGCGGGGCTCACAAAGAGGTGCACCTGCATAGGGCGCGAC AGCGCCCGGATCATTTCCGGAGTCACGGCGTCCACGCGGTGATCGAAGCG GTAGGACAGCCGCACATCGCTGGCGCCACCGGGCTCCACCGTCTCGGTGG TGAAGGTGTCACCCATGCATTCGTACTGGCAGTAGGCCTCCTGGCACTTG AGGGGGAGATGCCAGCAACCCTCGATTTCGAAGCGGTAGCCCCACGGCTT GCCCAACAGCTCCTCCGGCGACTCCACGAACAGCGCCTGAGCGCGAATTG CAGCGGGTGCTGCCGCCGCCGTCGCTTTTGCTGCGCCGTCGTCGCCGCTG GAACCGCCCTCACTGCTGGCTTTGTCGTCTCCGGTCGCTGTAACCGGCAT GGTGCTGCAGGCGTCGGCGCCGACGCTGGGCTCTGGCGGTGGCAGAAGCG TCCATGCCGCCTCGAGCTGCCCGATTTCGCCGTATGGAGCCTGCACGGAA TCAACGGGCGATTCGACAGGGATTACCACACCATAAGCCTAGACAGCAGT TGCCTTGCTTTCGAGCCGTTTACTCCATCAGAGAAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2091:4320..4957+

>mRNA_P-wetherbeei_contig2091.2.1 ID=mRNA_P-wetherbeei_contig2091.2.1|Name=mRNA_P-wetherbeei_contig2091.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig2091:4320..4957+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGAACCGCTTCCGCACGTCGGCAGCGGCCGTGGTAATGGCCTGCATCG
GTGCCTCGAGTGCGGGGCTCACAAAGAGGTGCACCTGCATAGGGCGCGAC
AGCGCCCGGATCATTTCCGGAGTCACGGCGTCCACGCGGTGATCGAAGCG
GTAGGACAGCCGCACATCGCTGGCGCCACCGGGCTCCACCGTCTCGGTGG
TGAAGGTGTCACCCATGCATTCGTACTGGCAGTAGGCCTCCTGGCACTTG
AGGGGGAGATGCCAGCAACCCTCGATTTCGAAGCGGTAGCCCCACGGCTT
GCCCAACAGCTCCTCCGGCGACTCCACGAACAGCGCCTGAGCGCGAATTG
CAGCGGGTGCTGCCGCCGCCGTCGCTTTTGCTGCGCCGTCGTCGCCGCTG
GAACCGCCCTCACTGCTGGCTTTGTCGTCTCCGGTCGCTGTAACCGGCAT
GGTGCTGCAGGCGTCGGCGCCGACGCTGGGCTCTGGCGGTGGCAGAAGCG
TCCATGCCGCCTCGAGCTGCCCGATTTCGCCGTATGGAGCCTGCACGGAA
TCAACGGGCGATTCGACAGGGATTACCACACCATAAGCCTAGACAGCAGT
TGCCTTGCTTTCGAGCCGTTTACTCCATCAGAGAAG
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