mRNA_P-wetherbeei_contig20885.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20885.2.1
Unique NamemRNA_P-wetherbeei_contig20885.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A3C2B4U6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B4U6_9ACTN)

HSP 1 Score: 197 bits (502), Expect = 3.790e-60
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 1
Query:    1 DQMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGAD 330
            D MTDAE+KDRQEFAFEAAIRMRDRFMQQEVW+RMG+N RDI+PLVLADPTR +FQ MLFSKIVPN KKLGLLDRNDKWLR +FEE+ VIQFEDWEDTGEEY+KFELGAD
Sbjct:  261 DGMTDAEIKDRQEFAFEAAIRMRDRFMQQEVWDRMGINTRDIIPLVLADPTRGVFQSMLFSKIVPNCKKLGLLDRNDKWLRHKFEEMNVIQFEDWEDTGEEYVKFELGAD 370          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A6N2DHR1_9ACTN (Ferritin-like domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DHR1_9ACTN)

HSP 1 Score: 197 bits (500), Expect = 7.570e-60
Identity = 92/115 (80.00%), Postives = 106/115 (92.17%), Query Frame = 1
Query:    1 DQMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGADAPAVV 345
            D MTDAEM DRQEFA+EAA+RMRDRFM QEVWERMGVN RD++P+VL DPTR +FQQMLFSKIVPN KKLGLLDRN++WLRRRFEE+GVIQFEDWEDTG EY+KFELG++AP+ +
Sbjct:  261 DGMTDAEMMDRQEFAYEAAVRMRDRFMSQEVWERMGVNPRDVLPIVLRDPTRDLFQQMLFSKIVPNCKKLGLLDRNEQWLRRRFEEMGVIQFEDWEDTGSEYIKFELGSEAPSPI 375          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A7Y2EUB2_9ACTN (Ferritin-like domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EUB2_9ACTN)

HSP 1 Score: 196 bits (497), Expect = 3.050e-59
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1
Query:   10 TDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGADAPAVVHPH 354
            TDAEM+DRQEFAFEAA+RMRDRF+ QEVWERMGV  RD++P+VL DPTR +FQQMLFSKIVPN KKLGLLDRNDKWLR RFEE+GVIQFEDWEDT EE+LKFE+GADAP  V  H
Sbjct:  278 TDAEMRDRQEFAFEAAVRMRDRFLSQEVWERMGVAPRDVLPIVLKDPTRDLFQQMLFSKIVPNCKKLGLLDRNDKWLRHRFEEMGVIQFEDWEDTSEEFLKFEIGADAPTPVAGH 392          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A3C1L961_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L961_9ACTN)

HSP 1 Score: 193 bits (490), Expect = 2.460e-58
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 1
Query:    1 DQMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFEL 321
            D+MTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVR+++PLVLADPTR +FQ MLFSKIVPN KKLGLLDRNDKWLR RFEE+GVIQFEDW DTGEE+  FEL
Sbjct:  261 DEMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVREVIPLVLADPTRAVFQSMLFSKIVPNCKKLGLLDRNDKWLRHRFEEMGVIQFEDWADTGEEFTAFEL 367          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A6I3FC17_9ACTN (Ferritin-like domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3FC17_9ACTN)

HSP 1 Score: 191 bits (486), Expect = 9.570e-58
Identity = 91/115 (79.13%), Postives = 105/115 (91.30%), Query Frame = 1
Query:    1 DQMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGADAPAVV 345
            DQM+DAE+KDRQEFAFEAA+RMRDRFMQQEVW RMGV+ +DI+PLV+ DPTR +FQ MLFSKIVPN KKLGLLDRNDKWLRRRFEE+ VIQFEDWE+T +EYLKFE+G+D P+ V
Sbjct:  261 DQMSDAEIKDRQEFAFEAAVRMRDRFMQQEVWNRMGVSTKDILPLVIHDPTRLVFQGMLFSKIVPNCKKLGLLDRNDKWLRRRFEEMNVIQFEDWENTDDEYLKFEIGSDMPSPV 375          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A6I3WZI3_9ACTN (Ferritin-like domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A6I3WZI3_9ACTN)

HSP 1 Score: 190 bits (482), Expect = 3.720e-57
Identity = 95/115 (82.61%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 DQMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGADAPAVV 345
            D MTD EMKDRQEFAFEAA+RMRDRFM QEVWERMGVNVRDIVP+VLADPTR MFQ MLFSKIVPN KKLGLLDRNDKWLR RFE++GVIQFEDW DTGEEY  F L A A  V 
Sbjct:  261 DGMTDLEMKDRQEFAFEAAVRMRDRFMSQEVWERMGVNVRDIVPIVLADPTRVMFQSMLFSKIVPNCKKLGLLDRNDKWLRHRFEDMGVIQFEDWADTGEEYDAFGLDAAAMPVA 375          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A539DWT4_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DWT4_9ACTN)

HSP 1 Score: 186 bits (471), Expect = 4.140e-57
Identity = 91/112 (81.25%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 DQMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGADAP 336
            D MTDAE+KDRQEFAFEAA+RMRDRFM QEVWERMGV V+DI P+VLADPTR +FQ MLFSKIVPN KKLGLLDRNDKWLR RFEE+GVIQFEDW DTGEEY  F L A  P
Sbjct:  119 DGMTDAELKDRQEFAFEAAVRMRDRFMSQEVWERMGVPVKDIAPMVLADPTRGLFQSMLFSKIVPNCKKLGLLDRNDKWLRHRFEEMGVIQFEDWADTGEEYTAFALDAPPP 230          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A7W0KZA8_9ACTN (Ferritin-like domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KZA8_9ACTN)

HSP 1 Score: 188 bits (478), Expect = 1.370e-56
Identity = 92/109 (84.40%), Postives = 100/109 (91.74%), Query Frame = 1
Query:    7 MTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGADA 333
            MTDAEMK+RQEFA+EAA+RMRDRF+ QEVWER GVN RD+VPLVL+DPTR MFQQMLF+KIVPN KKLGLLDRND WLR RFEE+GVIQFE  EDTGEEYLKFELGADA
Sbjct:  263 MTDAEMKERQEFAYEAAVRMRDRFLSQEVWERHGVNPRDVVPLVLSDPTREMFQQMLFAKIVPNCKKLGLLDRNDSWLRHRFEEMGVIQFEHLEDTGEEYLKFELGADA 371          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A6J6GFM8_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6GFM8_9ZZZZ)

HSP 1 Score: 181 bits (459), Expect = 2.520e-56
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 1
Query:    4 QMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELG 324
            QM+D E+KDRQEFA+EA++RMRDRFM QEVWERMGVN RD++PLVL DPTR +FQQMLFSKIVPN KKLGLLDRND WLRRRFEE+GVIQFE+  DTGEEY+KFELG
Sbjct:   53 QMSDKEIKDRQEFAYEASVRMRDRFMSQEVWERMGVNTRDVIPLVLNDPTRAVFQQMLFSKIVPNCKKLGLLDRNDAWLRRRFEEMGVIQFENEVDTGEEYVKFELG 159          
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Match: A0A4P5SPD9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5SPD9_9ACTN)

HSP 1 Score: 187 bits (475), Expect = 3.960e-56
Identity = 86/109 (78.90%), Postives = 101/109 (92.66%), Query Frame = 1
Query:    4 QMTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTRTMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEYLKFELGAD 330
            QMTD E+K+RQEFAFEA++RMRDRF+QQEVW+R+GVN ++I P++L DPTRT+FQQMLF+KIVPN KKLGLLDRNDKWLR RFE++GVIQFEDWEDTGEEYL FELG D
Sbjct:  262 QMTDVEIKERQEFAFEASVRMRDRFLQQEVWDRLGVNTKEIAPILLQDPTRTIFQQMLFAKIVPNCKKLGLLDRNDKWLRHRFEDLGVIQFEDWEDTGEEYLAFELGKD 370          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20885.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B4U6_9ACTN3.790e-6086.36Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6N2DHR1_9ACTN7.570e-6080.00Ferritin-like domain-containing protein n=1 Tax=Il... [more]
A0A7Y2EUB2_9ACTN3.050e-5980.87Ferritin-like domain-containing protein n=1 Tax=Il... [more]
A0A3C1L961_9ACTN2.460e-5886.92Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A6I3FC17_9ACTN9.570e-5879.13Ferritin-like domain-containing protein n=2 Tax=ro... [more]
A0A6I3WZI3_9ACTN3.720e-5782.61Ferritin-like domain-containing protein n=4 Tax=ro... [more]
A0A539DWT4_9ACTN4.140e-5781.25Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7W0KZA8_9ACTN1.370e-5684.40Ferritin-like domain-containing protein n=1 Tax=Ac... [more]
A0A6J6GFM8_9ZZZZ2.520e-5681.31Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A4P5SPD9_9ACTN3.960e-5678.90Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20885contigP-wetherbeei_contig20885:842..1198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1229780.BN381_80295
PFAMsAurF
Model size357
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.03e-43
EggNOG OGsCOG0208@1|root,COG0208@2|Bacteria,2GJKZ@201174|Actinobacteria
DescriptionP-aminobenzoate N-oxygenase AurF
Cds size351
COG categoryF
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.3197312-CDS-P-wetherbeei_contig20885:841..11921683186211.3197312-CDS-P-wetherbeei_contig20885:841..1192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20885 842..1192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.328618-UTR-P-wetherbeei_contig20885:1192..11981683186211.328618-UTR-P-wetherbeei_contig20885:1192..1198Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20885 1193..1198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20885.2.1prot_P-wetherbeei_contig20885.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20885 842..1192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20885.2.1

>prot_P-wetherbeei_contig20885.2.1 ID=prot_P-wetherbeei_contig20885.2.1|Name=mRNA_P-wetherbeei_contig20885.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MTDAEMKDRQEFAFEAAIRMRDRFMQQEVWERMGVNVRDIVPLVLADPTR
TMFQQMLFSKIVPNTKKLGLLDRNDKWLRRRFEEIGVIQFEDWEDTGEEY
LKFELGADAPAVVHPH*
back to top

mRNA from alignment at P-wetherbeei_contig20885:842..1198-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20885.2.1 ID=mRNA_P-wetherbeei_contig20885.2.1|Name=mRNA_P-wetherbeei_contig20885.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig20885:842..1198- (Phaeothamnion wetherbeei SAG_119_79)
GACCAGATGACCGACGCCGAGATGAAGGATCGCCAGGAGTTCGCCTTCGA GGCGGCCATCCGCATGCGCGACCGCTTCATGCAGCAGGAGGTCTGGGAAC GGATGGGCGTCAACGTGCGCGACATCGTCCCGCTGGTGCTGGCAGACCCG ACCCGCACGATGTTCCAGCAGATGCTGTTCAGCAAGATCGTGCCGAACAC GAAGAAGCTGGGCCTGCTCGACCGCAACGACAAGTGGCTGCGCCGTCGCT TCGAGGAGATCGGCGTCATCCAGTTCGAGGACTGGGAGGACACCGGCGAG GAGTACCTCAAGTTCGAGCTCGGGGCCGACGCCCCGGCCGTCGTGCATCC GCACTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20885:842..1198-

>mRNA_P-wetherbeei_contig20885.2.1 ID=mRNA_P-wetherbeei_contig20885.2.1|Name=mRNA_P-wetherbeei_contig20885.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig20885:842..1198- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGACGCCGAGATGAAGGATCGCCAGGAGTTCGCCTTCGAGGCGGC
CATCCGCATGCGCGACCGCTTCATGCAGCAGGAGGTCTGGGAACGGATGG
GCGTCAACGTGCGCGACATCGTCCCGCTGGTGCTGGCAGACCCGACCCGC
ACGATGTTCCAGCAGATGCTGTTCAGCAAGATCGTGCCGAACACGAAGAA
GCTGGGCCTGCTCGACCGCAACGACAAGTGGCTGCGCCGTCGCTTCGAGG
AGATCGGCGTCATCCAGTTCGAGGACTGGGAGGACACCGGCGAGGAGTAC
CTCAAGTTCGAGCTCGGGGCCGACGCCCCGGCCGTCGTGCATCCGCACTG
A
back to top