mRNA_P-wetherbeei_contig20873.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20873.1.1
Unique NamemRNA_P-wetherbeei_contig20873.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20873.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20873contigP-wetherbeei_contig20873:63..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size716
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.0467682-UTR-P-wetherbeei_contig20873:62..3671683186211.0467682-UTR-P-wetherbeei_contig20873:62..367Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20873 63..367 +
1683186211.0787528-UTR-P-wetherbeei_contig20873:775..7781683186211.0787528-UTR-P-wetherbeei_contig20873:775..778Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20873 776..778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.0645146-CDS-P-wetherbeei_contig20873:367..7751683186211.0645146-CDS-P-wetherbeei_contig20873:367..775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20873 368..775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20873.1.1prot_P-wetherbeei_contig20873.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20873 368..775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20873.1.1

>prot_P-wetherbeei_contig20873.1.1 ID=prot_P-wetherbeei_contig20873.1.1|Name=mRNA_P-wetherbeei_contig20873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MPKLRRRQRQERGRPSSSFLRTELARAAAIVTAAVAAAAAAVAKAAKAAA
GKTAEAAKAATGAAPTRRMQRGRQTGGSESGGGGLTGRVTRPRRRMPLRQ
KQSFSGSSCRSLENIQVLRERSLGGSVATDVKMCT*
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mRNA from alignment at P-wetherbeei_contig20873:63..778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20873.1.1 ID=mRNA_P-wetherbeei_contig20873.1.1|Name=mRNA_P-wetherbeei_contig20873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=716bp|location=Sequence derived from alignment at P-wetherbeei_contig20873:63..778+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAATGAAATGGATATTTTCCTGAAGAGATGCGTCTTCAATAGATATGA
CGAATGCCGTGCGGTTAGCTTCATGGCTGTTATATGAGGAGTAAGTGAAG
AAAGAGGAAGTTGGGGTTCACAGACTGCTCTTTTCTTGAAGCGAAACGAC
AAAACTCCGACATGCCCCCAAGTGCCACTTCCAGGTGCGCTTGTGCTTCC
CGTGCGCCGAAAAGCTCTACCACAACCGCCTGGACGAGCTGCGGCGACAG
GCAGGGCCGTCGGCGGCAGCGGCGGATGAGGAAGAGTCATTGGAAGACAC
TGTGAATGCCGAAGCTTCGGAGGAGGCAGCGGCAGGAGCGCGGGCGGCCC
TCTTCATCTTTTCTGAGGACCGAATTGGCTCGCGCGGCGGCGATAGTGAC
GGCGGCGGTGGCGGCGGCGGCGGCGGCGGTGGCAAAGGCAGCAAAGGCGG
CCGCAGGAAAGACGGCGGAGGCGGCGAAGGCGGCTACCGGAGCGGCTCCG
ACGAGGAGGATGCAGAGGGGGAGACAGACTGGCGGCAGCGAAAGCGGCGG
CGGCGGCCTCACGGGAAGGGTGACGAGGCCGCGGCGCCGGATGCCGCTGC
GGCAGAAGCAGAGCTTTTCAGGATCCTCATGCCGTAGCCTAGAGAACATT
CAAGTCTTAAGAGAAAGGAGTCTCGGCGGGTCTGTCGCAACTGATGTAAA
AATGTGTACATAGTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20873:63..778+

>mRNA_P-wetherbeei_contig20873.1.1 ID=mRNA_P-wetherbeei_contig20873.1.1|Name=mRNA_P-wetherbeei_contig20873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig20873:63..778+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAAGCTTCGGAGGAGGCAGCGGCAGGAGCGCGGGCGGCCCTCTTC
ATCTTTTCTGAGGACCGAATTGGCTCGCGCGGCGGCGATAGTGACGGCGG
CGGTGGCGGCGGCGGCGGCGGCGGTGGCAAAGGCAGCAAAGGCGGCCGCA
GGAAAGACGGCGGAGGCGGCGAAGGCGGCTACCGGAGCGGCTCCGACGAG
GAGGATGCAGAGGGGGAGACAGACTGGCGGCAGCGAAAGCGGCGGCGGCG
GCCTCACGGGAAGGGTGACGAGGCCGCGGCGCCGGATGCCGCTGCGGCAG
AAGCAGAGCTTTTCAGGATCCTCATGCCGTAGCCTAGAGAACATTCAAGT
CTTAAGAGAAAGGAGTCTCGGCGGGTCTGTCGCAACTGATGTAAAAATGT
GTACATAG
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