mRNA_P-wetherbeei_contig10806.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10806.1.1
Unique NamemRNA_P-wetherbeei_contig10806.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10806contigP-wetherbeei_contig10806:225..2199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1975
Hectar predicted targeting categoryother localisation
Exons1
Cds size1974
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185885.5368254-CDS-P-wetherbeei_contig10806:224..21981683185885.5368254-CDS-P-wetherbeei_contig10806:224..2198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10806 225..2198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10806.1.1prot_P-wetherbeei_contig10806.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10806 225..2198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10806.1.1

>prot_P-wetherbeei_contig10806.1.1 ID=prot_P-wetherbeei_contig10806.1.1|Name=mRNA_P-wetherbeei_contig10806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=658bp
LESQPSRWRFTMARGNSQNAVGSADFGAAGGGMNGGGGDGGGLSNTTRSF
DGYDGGVSPGPGGGDHSGLFGVGGIADIIGGGGASKALLFPASSWGTDGS
FEALLDTRGAVLDPDNDPRSLASVTSAAAVLAEAEAVEPVNFTPSEVEYF
LWLGLEEPAEGRWHPAALRVLRGMVRASVPALPLEEQEENGGTGGDGAAG
GSGDNWDRRGTDGSATTVPRARAGSDSALPRPGAVNNAATPPSPSQHRPS
TLSPPPPPPQQQLTIAGTRVAEAVGTLLAAGGRLPRLLLLEELPRTDAEV
VGHVELARLVAAAASPAAPEAARAAVRAAVPTARVLALLRRAVPLQLQAA
LLELLRCLLVLSPPPLPSPSPLQHRGMQSPLPTQASQVPSVAGWQRGGGG
GGGGGGVGVGRPGSAAARLTASGAASAVMALARLSTSPKPSAGPTSTSVT
DTPRSPITEPPSIAGGGGSVRVANGAGSSSASGHGVSARGGAIRECMSTD
LVDAVAAAVAGMRQMAILCWLEQHPHAAVDVDWQQELMSPRTPATPAVSA
ASPFAAAAAAPQPPSEAAAAVSRVAVGPIAAMASAVAAATAAAASAAAAV
VGDDAPPTPASPAPAATPTSGGAWAGAGVIRPGEVVEVRRLLIYVEEGVL
PLALAAAA
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mRNA from alignment at P-wetherbeei_contig10806:225..2199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10806.1.1 ID=mRNA_P-wetherbeei_contig10806.1.1|Name=mRNA_P-wetherbeei_contig10806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1975bp|location=Sequence derived from alignment at P-wetherbeei_contig10806:225..2199+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAATCGCAACCGAGCCGCTGGCGTTTCACCATGGCGCGCGGAAATTC
TCAGAATGCCGTCGGCAGCGCGGATTTCGGGGCGGCTGGCGGCGGCATGA
ACGGTGGCGGCGGCGACGGAGGCGGGCTGAGCAACACGACGCGGAGTTTC
GACGGGTACGACGGTGGCGTCAGCCCGGGCCCTGGCGGCGGCGACCACAG
CGGCCTGTTCGGCGTCGGCGGGATCGCCGACATTATCGGCGGCGGTGGCG
CCAGCAAGGCGCTGCTGTTCCCCGCGTCGAGCTGGGGCACCGACGGCAGC
TTCGAAGCGCTGTTGGACACGCGTGGGGCCGTCTTGGATCCGGACAACGA
CCCGCGCAGCCTGGCATCCGTCACGTCTGCCGCGGCGGTCCTGGCGGAGG
CGGAGGCCGTCGAGCCGGTAAACTTCACGCCGTCGGAGGTCGAATACTTC
CTGTGGCTCGGCCTGGAGGAGCCGGCAGAGGGCCGCTGGCACCCGGCGGC
GCTGCGCGTGCTCCGCGGTATGGTGCGGGCATCCGTGCCGGCGCTGCCGC
TGGAGGAACAGGAAGAGAATGGCGGCACTGGCGGCGACGGCGCTGCTGGC
GGCAGCGGAGACAACTGGGACCGCCGCGGCACGGACGGCAGCGCCACGAC
AGTGCCACGGGCCCGGGCTGGCAGCGACAGTGCGCTGCCGCGTCCGGGCG
CCGTCAACAACGCGGCGACGCCGCCGTCGCCGTCGCAGCACCGGCCGTCG
ACGCTGTCGCCGCCGCCGCCGCCGCCGCAGCAGCAGCTGACCATCGCCGG
CACGCGGGTGGCAGAAGCGGTCGGGACGTTATTGGCGGCGGGCGGGCGGC
TGCCGCGGCTGCTCCTGTTGGAAGAGCTGCCGCGCACGGACGCCGAGGTG
GTGGGGCACGTGGAACTAGCGCGGCTAGTGGCGGCGGCGGCGTCGCCGGC
GGCGCCCGAGGCTGCGCGGGCGGCGGTGCGGGCAGCGGTACCGACGGCAC
GTGTCCTGGCGCTGCTGCGGAGGGCGGTGCCGCTGCAGCTGCAGGCGGCG
CTTCTCGAGCTGCTGCGCTGCCTGCTGGTGTTGTCGCCGCCGCCGCTACC
GTCGCCATCGCCGCTGCAGCATCGCGGCATGCAGTCGCCACTGCCGACGC
AGGCGTCGCAGGTCCCGTCAGTGGCGGGCTGGCAGCGTGGCGGCGGCGGC
GGTGGTGGTGGCGGCGGTGTCGGCGTGGGACGACCGGGTTCCGCTGCGGC
GCGACTCACCGCCAGCGGCGCCGCGTCGGCGGTCATGGCCTTGGCTCGCC
TCAGCACAAGCCCCAAGCCGTCTGCCGGCCCAACCTCGACGTCGGTCACC
GATACGCCGCGGTCGCCGATCACGGAGCCGCCCAGCATTGCCGGCGGCGG
TGGCAGTGTGCGGGTCGCCAACGGCGCCGGGAGCAGCAGCGCCAGCGGGC
ATGGCGTCAGCGCCCGAGGTGGCGCCATTCGCGAATGCATGTCAACCGAC
CTGGTGGACGCCGTGGCGGCCGCCGTGGCAGGGATGCGGCAGATGGCGAT
CCTCTGCTGGCTGGAGCAGCACCCGCACGCCGCGGTGGACGTCGACTGGC
AGCAGGAGCTGATGTCGCCACGGACGCCAGCGACACCTGCGGTGTCAGCA
GCGTCGCCGTTTGCCGCGGCTGCGGCGGCGCCACAACCGCCGTCAGAGGC
GGCGGCGGCGGTGTCGCGGGTGGCGGTGGGGCCGATTGCGGCGATGGCGT
CTGCAGTGGCAGCAGCGACGGCGGCGGCAGCATCTGCGGCGGCGGCAGTG
GTGGGAGACGACGCGCCACCCACACCGGCCTCGCCGGCCCCCGCTGCGAC
GCCGACGTCCGGCGGCGCCTGGGCGGGCGCCGGGGTGATCCGGCCGGGGG
AGGTGGTCGAAGTGCGTCGGCTCCTCATCTATGTGGAAGAAGGCGTCCTC
CCGCTGGCGCTGGCGGCGGCGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10806:225..2199+

>mRNA_P-wetherbeei_contig10806.1.1 ID=mRNA_P-wetherbeei_contig10806.1.1|Name=mRNA_P-wetherbeei_contig10806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1974bp|location=Sequence derived from alignment at P-wetherbeei_contig10806:225..2199+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAATCGCAACCGAGCCGCTGGCGTTTCACCATGGCGCGCGGAAATTC
TCAGAATGCCGTCGGCAGCGCGGATTTCGGGGCGGCTGGCGGCGGCATGA
ACGGTGGCGGCGGCGACGGAGGCGGGCTGAGCAACACGACGCGGAGTTTC
GACGGGTACGACGGTGGCGTCAGCCCGGGCCCTGGCGGCGGCGACCACAG
CGGCCTGTTCGGCGTCGGCGGGATCGCCGACATTATCGGCGGCGGTGGCG
CCAGCAAGGCGCTGCTGTTCCCCGCGTCGAGCTGGGGCACCGACGGCAGC
TTCGAAGCGCTGTTGGACACGCGTGGGGCCGTCTTGGATCCGGACAACGA
CCCGCGCAGCCTGGCATCCGTCACGTCTGCCGCGGCGGTCCTGGCGGAGG
CGGAGGCCGTCGAGCCGGTAAACTTCACGCCGTCGGAGGTCGAATACTTC
CTGTGGCTCGGCCTGGAGGAGCCGGCAGAGGGCCGCTGGCACCCGGCGGC
GCTGCGCGTGCTCCGCGGTATGGTGCGGGCATCCGTGCCGGCGCTGCCGC
TGGAGGAACAGGAAGAGAATGGCGGCACTGGCGGCGACGGCGCTGCTGGC
GGCAGCGGAGACAACTGGGACCGCCGCGGCACGGACGGCAGCGCCACGAC
AGTGCCACGGGCCCGGGCTGGCAGCGACAGTGCGCTGCCGCGTCCGGGCG
CCGTCAACAACGCGGCGACGCCGCCGTCGCCGTCGCAGCACCGGCCGTCG
ACGCTGTCGCCGCCGCCGCCGCCGCCGCAGCAGCAGCTGACCATCGCCGG
CACGCGGGTGGCAGAAGCGGTCGGGACGTTATTGGCGGCGGGCGGGCGGC
TGCCGCGGCTGCTCCTGTTGGAAGAGCTGCCGCGCACGGACGCCGAGGTG
GTGGGGCACGTGGAACTAGCGCGGCTAGTGGCGGCGGCGGCGTCGCCGGC
GGCGCCCGAGGCTGCGCGGGCGGCGGTGCGGGCAGCGGTACCGACGGCAC
GTGTCCTGGCGCTGCTGCGGAGGGCGGTGCCGCTGCAGCTGCAGGCGGCG
CTTCTCGAGCTGCTGCGCTGCCTGCTGGTGTTGTCGCCGCCGCCGCTACC
GTCGCCATCGCCGCTGCAGCATCGCGGCATGCAGTCGCCACTGCCGACGC
AGGCGTCGCAGGTCCCGTCAGTGGCGGGCTGGCAGCGTGGCGGCGGCGGC
GGTGGTGGTGGCGGCGGTGTCGGCGTGGGACGACCGGGTTCCGCTGCGGC
GCGACTCACCGCCAGCGGCGCCGCGTCGGCGGTCATGGCCTTGGCTCGCC
TCAGCACAAGCCCCAAGCCGTCTGCCGGCCCAACCTCGACGTCGGTCACC
GATACGCCGCGGTCGCCGATCACGGAGCCGCCCAGCATTGCCGGCGGCGG
TGGCAGTGTGCGGGTCGCCAACGGCGCCGGGAGCAGCAGCGCCAGCGGGC
ATGGCGTCAGCGCCCGAGGTGGCGCCATTCGCGAATGCATGTCAACCGAC
CTGGTGGACGCCGTGGCGGCCGCCGTGGCAGGGATGCGGCAGATGGCGAT
CCTCTGCTGGCTGGAGCAGCACCCGCACGCCGCGGTGGACGTCGACTGGC
AGCAGGAGCTGATGTCGCCACGGACGCCAGCGACACCTGCGGTGTCAGCA
GCGTCGCCGTTTGCCGCGGCTGCGGCGGCGCCACAACCGCCGTCAGAGGC
GGCGGCGGCGGTGTCGCGGGTGGCGGTGGGGCCGATTGCGGCGATGGCGT
CTGCAGTGGCAGCAGCGACGGCGGCGGCAGCATCTGCGGCGGCGGCAGTG
GTGGGAGACGACGCGCCACCCACACCGGCCTCGCCGGCCCCCGCTGCGAC
GCCGACGTCCGGCGGCGCCTGGGCGGGCGCCGGGGTGATCCGGCCGGGGG
AGGTGGTCGAAGTGCGTCGGCTCCTCATCTATGTGGAAGAAGGCGTCCTC
CCGCTGGCGCTGGCGGCGGCGGCG
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