mRNA_P-wetherbeei_contig20824.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20824.1.2
Unique NamemRNA_P-wetherbeei_contig20824.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig20824.1.2 vs. uniprot
Match: D8LHA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHA9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.600e-7
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = 1 
Query:   28 WHKAPLGKFLAYEVSNPGFRPFLIGLGAKSCSLFPNFVSWHLDLSFSPLASITTSRISAFVCGVIPARGITDEVRSKSPYWRQ 276
            WHK P  + +++E+   GF+PF IG+G                             ISAF+CGV+P+ G TDE R  S Y++Q
Sbjct:    6 WHKLPWRQLISHEIRRDGFKPFFIGMG-----------------------------ISAFLCGVVPSIGFTDEDRKNSVYYQQ 59
[Close]
BLAST of mRNA_P-wetherbeei_contig20824.1.2 vs. uniprot
Match: A0A485LTB6_9STRA (Aste57867_23874 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTB6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-6
Identity = 28/87 (32.18%), Postives = 41/87 (47.13%), Query Frame = 1 
Query:   28 WHKAPLGKFLAYEVSNPGFRPFLIGLGAKSCSLFPNFVSWHLDLSFSPLASITTSRISAFVCGVIPARGITDEVRSKSPYWRQSKGK 288
            WHK     ++ +E + P FRPF+ G  A                             S F+CGV+PARG +DE ++KS YW+++ GK
Sbjct:    9 WHKMGFTNYIVHEFNRPTFRPFVYGGVA-----------------------------SFFICGVLPARGASDEDKAKSVYWQRTNGK 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20824.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHA9_ECTSI2.600e-733.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LTB6_9STRA1.110e-632.18Aste57867_23874 protein n=1 Tax=Aphanomyces stella... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20824contigP-wetherbeei_contig20824:403..1184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.331
Model size589
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.77e-10
EggNOG OGs2E2RW@1|root,2S9YQ@2759|Eukaryota,3QGG9@4776|Peronosporales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001210.1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186209.5686808-UTR-P-wetherbeei_contig20824:402..6821683186209.5686808-UTR-P-wetherbeei_contig20824:402..682Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20824 403..682 -
1683186209.6013699-UTR-P-wetherbeei_contig20824:1178..11841683186209.6013699-UTR-P-wetherbeei_contig20824:1178..1184Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20824 1179..1184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186209.5803552-CDS-P-wetherbeei_contig20824:682..8841683186209.5803552-CDS-P-wetherbeei_contig20824:682..884Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20824 683..884 -
1683186209.5895941-CDS-P-wetherbeei_contig20824:1077..11781683186209.5895941-CDS-P-wetherbeei_contig20824:1077..1178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20824 1078..1178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20824.1.2prot_P-wetherbeei_contig20824.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20824 683..1178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20824.1.2

>prot_P-wetherbeei_contig20824.1.2 ID=prot_P-wetherbeei_contig20824.1.2|Name=mRNA_P-wetherbeei_contig20824.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MTAAKMLWHKAPLGKFLAYEVSNPGFRPFLIGLGAKSCSLFPNFVSWHLD
LSFSPLASITTSRISAFVCGVIPARGITDEVRSKSPYWRQSKGKEGEAHH
*
back to top

mRNA from alignment at P-wetherbeei_contig20824:403..1184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20824.1.2 ID=mRNA_P-wetherbeei_contig20824.1.2|Name=mRNA_P-wetherbeei_contig20824.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=782bp|location=Sequence derived from alignment at P-wetherbeei_contig20824:403..1184- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCATGACTGCCGCAAAAATGCTGTGGCACAAGGCGCCCCTGGGCAA
GTTTCTTGCTTACGAGGTCAGCAACCCAGGCTTCCGGCCCTTCCTCATCG
GCCTCGGGTAAGTGAGGAGGGCGGTGCGGGAAGGTACACGTATTCGCAAT
ATTGATAGGATACTGGATTTCCCAATTGTTTAATTCAAGGGCGTTCAGAA
GGCACGCGGCTAGGTCGTGTGCCGACAGAGCTGTAGAACCACAGCGTTCC
AGTAGTTGTGCTAGCTCGCCCTGCTTTTCCAGCGCAAGCACCGTAATCAG
GGCGAAATCCTGCTCCTTGTTTCCGAACTTTGTGTCTTGGCATCTTGACC
TCTCGTTCTCCCCCCTTGCCTCCATCACAACGAGCAGGATTTCCGCGTTC
GTCTGCGGCGTGATTCCTGCCCGGGGCATTACGGATGAGGTCCGCAGCAA
GTCCCCCTACTGGAGGCAGTCCAAGGGGAAGGAGGGCGAGGCGCACCATT
AAGAAAGAGGCACGCCCTTCGATGCGCCTAATCGGCCCAGGGGGCAGCGC
CGTTGCGTTGGACTAGCGCTGCCGAGGGGCTGCAAACTTTCTAGGCTTTT
CTTCGCGGCCCGCCGAGCGCAGGTGACTGGAGGTGGAGGAGCAGGCAGCT
TCGCCGCCGACAACCTTGCTGGCAGCTGCAGCGGCTGCAGTAGCGGCAAT
TGGGCACCTTGAGGCTCACCGCTATCGTCACGGGCCGCGGTATGATTGCG
ATACTGCGCGTAACATGTACATCTTTTTCAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20824:403..1184-

>mRNA_P-wetherbeei_contig20824.1.2 ID=mRNA_P-wetherbeei_contig20824.1.2|Name=mRNA_P-wetherbeei_contig20824.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig20824:403..1184- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCCGCAAAAATGCTGTGGCACAAGGCGCCCCTGGGCAAGTTTCT
TGCTTACGAGGTCAGCAACCCAGGCTTCCGGCCCTTCCTCATCGGCCTCG
GGGCGAAATCCTGCTCCTTGTTTCCGAACTTTGTGTCTTGGCATCTTGAC
CTCTCGTTCTCCCCCCTTGCCTCCATCACAACGAGCAGGATTTCCGCGTT
CGTCTGCGGCGTGATTCCTGCCCGGGGCATTACGGATGAGGTCCGCAGCA
AGTCCCCCTACTGGAGGCAGTCCAAGGGGAAGGAGGGCGAGGCGCACCAT
TAA
back to top