mRNA_P-wetherbeei_contig20693.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20693.1.1
Unique NamemRNA_P-wetherbeei_contig20693.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: A0A5J6ME02_9PROT (Histidine kinase n=2 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6ME02_9PROT)

HSP 1 Score: 120 bits (301), Expect = 4.090e-26
Identity = 114/399 (28.57%), Postives = 179/399 (44.86%), Query Frame = 1
Query:   10 PLVATMLFAFAVLIGIWIVAYLNRAGDRDEIYRMAHAELLGSQSILAAQVGRTMESAQSLLESVDDWASEQTGVP-DLTDLGKLVTRLQRRHLIRLDIRLYDIRGNMVASAAYPDG-AINVADREYIKALEDMPPGSIHIGRQIIARDQGTRQIP----VAIRMRPNVLDVAYAATGISIAPLAEMFSSIFVTAPAIVGIVRDDGYVLFRSPDPEGFTDRRIDLDNIVPGGIRNPRRQSGLFATRIDPAGQQIVTAFKAVDGQPLYVYGSFRVRDLEAKLAARTPWTLGFAIATSIGVLLFAGAVVRFLALREREAERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            P++A + FA  + +G+      +     D ++R A  E     ++ A  VGR  E +   L  +  W     G P D  DL  L   L         I + D  G  V   +   G A +V+ R +     D P G++     +   D     +P    +A++ R  V+     AT  S+  + ++ +S+       + +   D  ++    +       ++  + ++ G            A      G  ++   + +D Q L++      R  +  LA+     +  A+   + + L  G+  R L   E   + +R +L  A  AN AK  FLAN+SHELRTPLNAIIGFSE +  Q FGPI +RYRGYV D+L +GRHLL IV QLLD+A+IEA
Sbjct:   29 PILAAVSFASILAMGVLFAVTTHS----DTLHR-AENECQRMAAVAAVHVGRIAEESGRSLRVIAQWIERNPGAPLDSPDLIALADVLNIDPGQTRAIAVVDSTGQAVMLDSARAGLAFDVSARSFFPVARDGPEGTLLFAPPVRNLDTNELTVPALYKIAVQGRELVI-----ATAFSVGRVQDLMTSLLADYHGSLLLKSGDRVLVGAIENGSDEGTEKVASEALLGGPSAGAPSSPDQIACSRPVVGTSLLVEAR-LDRQALFL------RWDKIVLASSALMLVVLALVVFLSIEL--GSFYRRLRSSE---DSLRDSLAHANEANQAKTMFLANMSHELRTPLNAIIGFSELIERQAFGPISDRYRGYVTDILQSGRHLLSIVNQLLDMASIEA 405          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: A0A5J6MTL8_9PROT (Histidine kinase n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=A0A5J6MTL8_9PROT)

HSP 1 Score: 115 bits (287), Expect = 2.870e-24
Identity = 124/413 (30.02%), Postives = 179/413 (43.34%), Query Frame = 1
Query:   10 PLVATMLFAFAVLIGIWIVAYLNRAGDRDEIYRMAHAELLGSQSILAAQVGRTMESAQSLLESVDDWASEQTGVP-DLTDLGKLVTRLQRRHLIRLDIRLYDIRGNMVASAAYPDGA---INVADREYIKALEDMPPGSIHIGRQIIARDQGTRQIPVAIRMRPNVLDVAYAATGISIAPLAEMFSSIFVTAPAIVGIVRDD--GYVLFRSPDPEGFTDRRIDLDNIVPGGIRNPRRQSGLFATRIDPAGQQI-------VTAFKAVDGQPLYVYGSFRVRDLEAKLAARTPWTLGFAIATSIGVLLFAGAVVRFLALRERE--------AERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIE 1185
            P++A  LF  ++L+   +VA +     RD + R    E     ++ A  V R  E     L  V  W       P D  DL  L   +         I + D  G  V     P G    I+++ R Y     D P  ++       +   G   +P   ++     ++    T  S+  + ++          +V ++ ++  G +L R+ D             ++   IR    Q+   A      GQ +       +T  + + G  L V       D  A LA    W  G  +A S G+LL    VV FL+L  R          E +R +L +A  AN AK  FLAN+SHELRTPLNAIIGFSE +  Q FGP+ E+YR YVGD+L +GRHLL IV QLLD+A+IE
Sbjct:   28 PVLAATLFV-SILVLAAVVAIITY---RDTL-RHTENECQRVVAVAAEHVARIAEETDRSLRVVAQWIERNPDAPLDAPDLVALAEIMTLDPGQTRAIAVIDSTGQAVRLE--PGGTARPIDMSKRPYFALGRDGPERTVLFAPPWRSSSTGELTVPALYKLAVERRELII-VTAFSVGRVGDL----------MVSLLSEEVHGRLLLRNGD------------TVLVAAIRAGPDQAAERAAADAMLGQPVPAPAPSEITCNRTIAGTGLAVEAHL---DRTAMLAG---WYRG--VAASAGLLLLVLLVVLFLSLELRSFYRRLRTSEESLRESLARANEANQAKTMFLANMSHELRTPLNAIIGFSELIERQAFGPVSEKYRIYVGDILQSGRHLLSIVNQLLDMASIE 402          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: S9SBL0_MAGFU (Histidine kinase n=1 Tax=Magnetospirillum fulvum MGU-K5 TaxID=1316936 RepID=S9SBL0_MAGFU)

HSP 1 Score: 110 bits (275), Expect = 1.090e-22
Identity = 114/394 (28.93%), Postives = 174/394 (44.16%), Query Frame = 1
Query:   55 IWIVAYLNRAGDRDEIYRMAHAELLGSQSILAAQVGRTMESAQSL-LESVDDWASEQTGVPDLTDLGKLVTRLQRRHLIRLDIRLYDIRGNMVASAAYPDGAIN--VADREYIKALEDMPPGSIHIGRQIIARDQGTRQIPVAIRMRPNVLDVAYAATGISIAPLAEMFSSIFVTAPAIVGIVRDDGYVLFRSPDPEGFTDRRIDLDNIVPGGIRNPRRQS---GLFATRIDPAGQQIVTAFKAVDGQPLYVYGSFRVRDLEAKLAARTPW------TLGFAIATSIGVLLFAGAVVRFLALREREA----ERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            +W+   L    DR    R AHAEL G  S+ AA+    + S   L L S++  +S     P    L   +T L  +    L +   D +G +   A  P   ++  V DR ++   +    G + +   + +R  G   +P+  R+      VA    GI IA L   + +I       + ++RDDG VL RSP P      RI   +  P   RN   Q    G F       G + + ++K +  +P  +  S  +     + A   PW       L      S+ + + A  ++R LA  + EA     RV+      +     + +FLA VSHELR+PLNAI+GFSE + +   GPI      Y+ D+  +G+HLL +V  LLD AAI+A
Sbjct:   22 VWLGGALWLWNDRAATVREAHAEL-GRMSLSAAEHAHRLLSLSDLFLASIEPISSRPQASPGDPTLIARLTALLSQDTALLGLATVDHQGMLTTIAPSPQQKVSAFVGDRAFVTEAQ---VGRLVVAPPVKSRLSGRWVLPLTRRIADPKSPVALLMAGIDIAALERHYDTIRHDVGGAITLLRDDGTVLIRSPSPPDS--ERIRNLSEAPL-FRNANTQGVDEGQFDGMSPFDGVERLGSYKRI--RPFNIGVSVSL----TRAAVLEPWWRRVWLVLTGTTLISLAIAIAATLILRHLASLQAEALTLENRVQDRTRALQQLLDRREQFLAGVSHELRSPLNAILGFSEALQMGIRGPIPPAQAEYLSDIHRSGQHLLALVNDLLDNAAIDA 402          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: A0A6J4F570_9PROT (Histidine kinase n=1 Tax=Magnetospirillum sp. SS-4 TaxID=2681465 RepID=A0A6J4F570_9PROT)

HSP 1 Score: 110 bits (275), Expect = 1.110e-22
Identity = 112/412 (27.18%), Postives = 192/412 (46.60%), Query Frame = 1
Query:    4 SSPLVATMLFAFAVLIGIWIVAYLNRAG----DRDEIYRMAHAELLGSQSILAAQVGRTMESAQSLLESVDDWA-----SEQTGVPDLTDLGKLVTRLQRRHLIRLDIRLYDIRGNM--VASAAYPDGAINVADREYIKALEDMPPGSIHIGRQIIARDQGTRQIPVAIRMRPNVLDVAYAATGISIAPLAEMFSSIFVTAPAIVG---IVRDDGYVLFRSPDPEGFTDRRI-DLDNIVPGGIRNPRRQSGLFATRIDPAGQQIVTAFKAVDGQPLYVYGSFRVRDLEAKLAARTPWTLGFAIATSIGVLLFAGAVVRFLALREREAERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIH---ERYRGYVGDVLSAGRHLLGIVAQLLDLAAIE 1185
             S  + + L AF+ L  I  +  L  A     +R+E  R+A   +  +  +LA+       +   +L  V +       +E+   P +  L  L  ++    ++R  I +  + G+     + + P   ++++DR+Y++   D     + IG  + +R+ G+  I VA R R    D ++A    ++  LA++ + + +  P       +V  +G +L RSPD + F  R I DL +      RN +   G   + +D  G+  + +       P+    S  V ++      +       A   ++ +L     ++R L   +R    +  A   A+ AN AK  FLAN+SHELRTPLNAI+GFS+  AL T  P H   ER   Y+G V ++GRHLLG++  +LDL+ IE
Sbjct:   17 GSAAIRSRLIAFSAL--IITILLLGTAAWIKTERNEALRVAAGVVSNTSRLLASVTDSNFGAIDKMLAGVAEVVVARPVTERDSRPAV--LAFLNRQVAEAGIVR-SILVIGVDGHTRYATNLSDPYQKVDLSDRDYVRHHTDRSDAGLFIGAPVRSRNDGS-WIMVASR-RVTASDGSFAGVAAAVVSLADLAAMVAIATPNPTDSALLVDGNGIILTRSPDHDRFVGRSIADLPSFQ--AARNVQSHGGSIVSPLD--GRMRLFSANRGGSSPVMAVVSRDVDEILTDWRFQAATLASAAAVVTLVILALTRGLLRQLVRVDRTVAELAAARIAADGANQAKSAFLANMSHELRTPLNAILGFSD--ALLTGFPDHSCRERCHDYLGHVQTSGRHLLGLINDILDLSKIE 415          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: UPI001B0E73E3 (Two-component sensor histidine kinase n=1 Tax=Rhodospirillales bacterium TMPK1 TaxID=2812848 RepID=UPI001B0E73E3)

HSP 1 Score: 107 bits (267), Expect = 1.140e-21
Identity = 108/388 (27.84%), Postives = 178/388 (45.88%), Query Frame = 1
Query:   91 RDEIYRMAHAELLGSQSILAAQVGRTMESAQSLLESVDDWASEQ--TGVPDLTDLGKLVTRLQRRHLIRLDIR----------LYDIRGNMVA-SAAYPDGAINVADREYIKALEDMPPGSIHIGRQIIARDQGTRQIPVAIRMRPNVLDVAY---AATGISIAPLAEMFSSIFVTAPAIVGIVRDDGYVLFRSPDPEGFTDRRIDLDNIVPGGIRNPRRQSGLFATRIDPAGQQI--VTAFKAVDGQPLYVYGSFRVRDLEAKLAARTPWTLGFAIATSIGVLLF----AGAVVRFLALREREAERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            R+ +   +  E      +LA Q  +T+ +A+  L+     ASE+     PD  +    V + +  H +  D++          L    G +++ S  +P   I V DR+Y  A+ D P     I   +  R  GT    +A R+R    D A+   A   I  A   + ++ I +     + + R+DG +L R P  E    R          G  +  +++G    R+  +  +I  + A + +  +PL +  +    D   ++  RT    G   ATS+ + L      G V+R +  R+ +A  +  A  QAE AN AK EFLA +SHELRTPL A++GF++ +  +       R R +  ++ +AGRHLLG++  +LDLA IEA
Sbjct:   15 REAVLAQSAEEATHLGLVLAEQTRQTIRAAELTLKL----ASERLDASAPDFEE----VAQSRATHAVLADLQAGLPQLSALSLVSASGEVLSFSRRWPTPLIRVDDRDYFIAMRDDPKLLRFISAPVQNRGSGTWTFYIAHRLRRA--DGAFGGVALAAIECAFFEQFYADIGLPNGGTLALFRNDGTLLSRWPHAEDLIGRSF----ATARGFTDIVQKTGSGTIRLTSSIDRIDRIIAMQTLKNEPLVISVTLE-EDQALRIWRRTATIWG---ATSVAIALIICGLTGLVLRQMRRRQAQALELAAAKRQAEAANTAKSEFLAAMSHELRTPLTAVLGFADLLR-EDGNEYTSRRREFAENIQTAGRHLLGLIGDVLDLAKIEA 383          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: A0A178M5R3_9PROT (Histidine kinase n=2 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178M5R3_9PROT)

HSP 1 Score: 107 bits (267), Expect = 1.770e-21
Identity = 61/97 (62.89%), Postives = 73/97 (75.26%), Query Frame = 1
Query:  919 ALREREAERVRT------ALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHE-RYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            AL+   AE VR       A+EQAE AN AK +FLANVSHELRTPLNAIIGFSE +A + FGP+ E RY+GYV DVLS+GRHLL ++  +LD+A IEA
Sbjct:  587 ALKAEIAEHVRAKRELTVAMEQAEIANRAKTDFLANVSHELRTPLNAIIGFSEVMASEMFGPLGEPRYKGYVQDVLSSGRHLLEVINDILDIARIEA 683          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: A0A1H6HEI1_MAGFU (Histidine kinase n=2 Tax=Magnetospirillum fulvum TaxID=1082 RepID=A0A1H6HEI1_MAGFU)

HSP 1 Score: 106 bits (264), Expect = 3.060e-21
Identity = 108/397 (27.20%), Postives = 170/397 (42.82%), Query Frame = 1
Query:   16 VATMLFAFAVLIGIWIVAYLNRAGDRDEIYRMAHAELLGSQSILAAQVGRTMESAQSLLESVDDWASEQTGVPDLTDLGKLVTRLQRRHLIRLDIRLYDIRGNMV-ASAAYPDGAINVADREYIKALEDMPPGSIHIGRQIIARDQGTRQIPVAIRMRPNVLDVAYAATGISIAPLAEMFSSIFVTAPAIVGIVRDDGYVLFRSPDPEGFTDRRIDLDNIVPGGIRNPRRQSGLFATRIDPAGQQIVTAFKAVDGQPLYVYGSFRVRDLEAKLAARTPW-TLGFAIATSIGVLLFAGAVVRFLALREREAERVRTALEQAETANAA----KREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            VAT L A  +   +W+   L    DR    R+AH EL       A    R +      L S++  A+     P   DL   +  L  +    L + + D +G +     +  +  + V DR ++        G I +   + +R  G   +P+  ++  +   VA     I +A L   + +I  +    + ++RDDG VL RSP P      R   D  +           G F       G   + +FK +    + V  S   RD   +   R  W  L  A+  S+ + + A  ++R LA    EA  +   +E    A       +++FLA VSHELR+PLNAI+GFS+ + L   GP+      Y+ D+  +G+HLL +V  LLD AAI+A
Sbjct:    3 VATSLAAVTL---VWLGGALWLWNDRAATVRVAHEELARMSLSAAEHAHRLLSLCDLFLASIEPIATRTEPEPGDLDLIARLNTLVGQDTALLGLAMVDHQGMLNNIDPSRSNKPVFVGDRAFVTEAR---VGRIIVAPPVKSRISGRWVLPLVRQVADSQSPVAVLMAAIDVAALERHYDTIRHSVGGAITLMRDDGTVLIRSPSPPDSERVRTLTDAPLFSNANAQGVDEGQFDGLSPFDGIDRLGSFKRIRSFNIGVSVSL-TRDAVLEPWWRRVWLVLTGAVLISLAIAIAATLILRHLASLRAEAVTLENRVEDRTRALKQLLDRRQQFLAGVSHELRSPLNAILGFSDALLLGIRGPVPPEQTEYLKDIHRSGQHLLSLVNDLLDSAAIDA 392          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: Q2W9V4_MAGSA (Histidine kinase n=2 Tax=Magnetospirillum magneticum TaxID=84159 RepID=Q2W9V4_MAGSA)

HSP 1 Score: 106 bits (264), Expect = 4.000e-21
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  904 VVRFLALREREAERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            V   ++ R+R  + +R A EQAE+A+ AK +FLA +SHELRTPLNAIIGF+E +  Q  GP+ ERYR Y GD+ ++GRHLLGI+  +LDLA IEA
Sbjct:  492 VAEDISWRKRAEDELRAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPMPERYREYAGDISASGRHLLGIITDILDLAKIEA 586          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: A0A2D8HEB3_9PROT (Histidine kinase n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2D8HEB3_9PROT)

HSP 1 Score: 100 bits (249), Expect = 1.640e-20
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  880 GVLLFAGAVVRFLALREREAERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPI-HERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            G LL+    +  +  R R    +R A E AE AN AK EFLAN+SHELRTPLNAIIGFSE ++ + FG + H  Y+ YVGD+  AGRHLLG++  LLD+A +EA
Sbjct:    6 GRLLYFEGTLTDMNDRVRAEVTLRKAKEMAELANRAKSEFLANMSHELRTPLNAIIGFSELLSSEAFGKLGHPNYKEYVGDIHGAGRHLLGLINDLLDVAKVEA 109          
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Match: A0A4Y9RX56_9CAUL (Histidine kinase n=3 Tax=Caulobacteraceae TaxID=76892 RepID=A0A4Y9RX56_9CAUL)

HSP 1 Score: 104 bits (259), Expect = 1.800e-20
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  937 AERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQTFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA 1188
            A +   A+ +AE AN AK EFLAN+SHELRTPLNAI GFSE +A + FGP++E+Y+GY GD+L +G+HLL ++  +LD+A IEA
Sbjct:  534 ARKYEVAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMASELFGPLNEKYKGYAGDILKSGQHLLSLINDVLDMAKIEA 617          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20693.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J6ME02_9PROT4.090e-2628.57Histidine kinase n=2 Tax=Hypericibacter terrae Tax... [more]
A0A5J6MTL8_9PROT2.870e-2430.02Histidine kinase n=1 Tax=Hypericibacter adhaerens ... [more]
S9SBL0_MAGFU1.090e-2228.93Histidine kinase n=1 Tax=Magnetospirillum fulvum M... [more]
A0A6J4F570_9PROT1.110e-2227.18Histidine kinase n=1 Tax=Magnetospirillum sp. SS-4... [more]
UPI001B0E73E31.140e-2127.84Two-component sensor histidine kinase n=1 Tax=Rhod... [more]
A0A178M5R3_9PROT1.770e-2162.89Histidine kinase n=2 Tax=Magnetospirillum marisnig... [more]
A0A1H6HEI1_MAGFU3.060e-2127.20Histidine kinase n=2 Tax=Magnetospirillum fulvum T... [more]
Q2W9V4_MAGSA4.000e-2156.84Histidine kinase n=2 Tax=Magnetospirillum magnetic... [more]
A0A2D8HEB3_9PROT1.640e-2053.85Histidine kinase n=1 Tax=Sneathiella sp. TaxID=196... [more]
A0A4Y9RX56_9CAUL1.800e-2058.33Histidine kinase n=3 Tax=Caulobacteraceae TaxID=76... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20693contigP-wetherbeei_contig20693:4..1191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380391.JIAS01000001_gene2788
PFAMsHATPase_c,HisKA
Model size1188
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.87e-32
EggNOG OGsCOG5002@1|root,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2TWEB@28211|Alphaproteobacteria,2JYUM@204441|Rhodospirillales
DescriptionHistidine kinase
Cds size1164
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.3873534-UTR-P-wetherbeei_contig20693:3..271683186206.3873534-UTR-P-wetherbeei_contig20693:3..27Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20693 4..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.395923-CDS-P-wetherbeei_contig20693:27..11911683186206.395923-CDS-P-wetherbeei_contig20693:27..1191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20693 28..1191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20693.1.1prot_P-wetherbeei_contig20693.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20693 28..1191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20693.1.1

>prot_P-wetherbeei_contig20693.1.1 ID=prot_P-wetherbeei_contig20693.1.1|Name=mRNA_P-wetherbeei_contig20693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=388bp
MLFAFAVLIGIWIVAYLNRAGDRDEIYRMAHAELLGSQSILAAQVGRTME
SAQSLLESVDDWASEQTGVPDLTDLGKLVTRLQRRHLIRLDIRLYDIRGN
MVASAAYPDGAINVADREYIKALEDMPPGSIHIGRQIIARDQGTRQIPVA
IRMRPNVLDVAYAATGISIAPLAEMFSSIFVTAPAIVGIVRDDGYVLFRS
PDPEGFTDRRIDLDNIVPGGIRNPRRQSGLFATRIDPAGQQIVTAFKAVD
GQPLYVYGSFRVRDLEAKLAARTPWTLGFAIATSIGVLLFAGAVVRFLAL
REREAERVRTALEQAETANAAKREFLANVSHELRTPLNAIIGFSEFVALQ
TFGPIHERYRGYVGDVLSAGRHLLGIVAQLLDLAAIEA
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mRNA from alignment at P-wetherbeei_contig20693:4..1191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20693.1.1 ID=mRNA_P-wetherbeei_contig20693.1.1|Name=mRNA_P-wetherbeei_contig20693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1188bp|location=Sequence derived from alignment at P-wetherbeei_contig20693:4..1191+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCATCGCCGCTCGTCGCGACGATGCTGTTCGCCTTCGCCGTCCTGAT CGGCATCTGGATCGTCGCGTACCTGAATCGCGCGGGCGACCGCGATGAAA TCTACCGGATGGCGCATGCCGAGTTGCTCGGTTCGCAGAGCATCCTCGCG GCACAGGTCGGCCGCACGATGGAGTCCGCGCAGAGCCTTCTGGAATCCGT CGACGACTGGGCCAGCGAACAGACCGGCGTGCCGGACCTTACGGACCTCG GCAAGCTCGTCACGCGGCTGCAGCGCCGGCATCTGATCCGGCTCGACATC CGCCTGTACGATATCCGCGGCAACATGGTCGCATCCGCCGCGTATCCCGA CGGCGCCATCAATGTCGCCGATCGCGAATATATCAAAGCGCTCGAGGACA TGCCCCCCGGCTCGATCCATATCGGCAGGCAGATCATCGCACGCGACCAG GGCACCCGGCAGATTCCCGTCGCGATCCGGATGCGGCCCAATGTCCTCGA TGTTGCCTACGCGGCCACCGGAATCTCGATCGCGCCGCTCGCGGAGATGT TCTCGAGCATCTTCGTGACGGCACCCGCCATCGTCGGGATCGTGCGCGAC GACGGCTATGTCCTGTTCCGCAGCCCGGATCCGGAAGGCTTCACCGACCG GCGCATCGATCTCGACAACATCGTTCCGGGCGGCATCCGCAATCCGCGGC GCCAGTCCGGCCTGTTCGCGACGCGCATCGATCCGGCCGGCCAGCAGATC GTGACGGCCTTCAAGGCCGTCGACGGCCAGCCGCTCTATGTCTACGGAAG TTTCCGGGTACGGGATCTGGAAGCCAAGCTTGCGGCACGCACGCCCTGGA CGCTCGGCTTCGCGATCGCGACGTCGATCGGCGTGCTGCTGTTTGCCGGT GCCGTCGTCCGGTTCCTGGCGCTGCGCGAGCGCGAGGCCGAGCGCGTGCG TACTGCCCTCGAACAGGCGGAGACCGCAAACGCCGCCAAGCGCGAGTTCC TCGCCAATGTCAGCCACGAGTTGCGCACGCCGCTCAACGCGATCATCGGC TTTTCCGAATTCGTGGCACTTCAGACCTTCGGGCCGATCCACGAGCGCTA TCGTGGCTATGTCGGCGACGTGCTTTCGGCCGGCCGGCACCTGCTGGGGA TCGTCGCCCAGCTTCTCGATCTGGCGGCCATCGAGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20693:4..1191+

>mRNA_P-wetherbeei_contig20693.1.1 ID=mRNA_P-wetherbeei_contig20693.1.1|Name=mRNA_P-wetherbeei_contig20693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1164bp|location=Sequence derived from alignment at P-wetherbeei_contig20693:4..1191+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTTCGCCTTCGCCGTCCTGATCGGCATCTGGATCGTCGCGTACCT
GAATCGCGCGGGCGACCGCGATGAAATCTACCGGATGGCGCATGCCGAGT
TGCTCGGTTCGCAGAGCATCCTCGCGGCACAGGTCGGCCGCACGATGGAG
TCCGCGCAGAGCCTTCTGGAATCCGTCGACGACTGGGCCAGCGAACAGAC
CGGCGTGCCGGACCTTACGGACCTCGGCAAGCTCGTCACGCGGCTGCAGC
GCCGGCATCTGATCCGGCTCGACATCCGCCTGTACGATATCCGCGGCAAC
ATGGTCGCATCCGCCGCGTATCCCGACGGCGCCATCAATGTCGCCGATCG
CGAATATATCAAAGCGCTCGAGGACATGCCCCCCGGCTCGATCCATATCG
GCAGGCAGATCATCGCACGCGACCAGGGCACCCGGCAGATTCCCGTCGCG
ATCCGGATGCGGCCCAATGTCCTCGATGTTGCCTACGCGGCCACCGGAAT
CTCGATCGCGCCGCTCGCGGAGATGTTCTCGAGCATCTTCGTGACGGCAC
CCGCCATCGTCGGGATCGTGCGCGACGACGGCTATGTCCTGTTCCGCAGC
CCGGATCCGGAAGGCTTCACCGACCGGCGCATCGATCTCGACAACATCGT
TCCGGGCGGCATCCGCAATCCGCGGCGCCAGTCCGGCCTGTTCGCGACGC
GCATCGATCCGGCCGGCCAGCAGATCGTGACGGCCTTCAAGGCCGTCGAC
GGCCAGCCGCTCTATGTCTACGGAAGTTTCCGGGTACGGGATCTGGAAGC
CAAGCTTGCGGCACGCACGCCCTGGACGCTCGGCTTCGCGATCGCGACGT
CGATCGGCGTGCTGCTGTTTGCCGGTGCCGTCGTCCGGTTCCTGGCGCTG
CGCGAGCGCGAGGCCGAGCGCGTGCGTACTGCCCTCGAACAGGCGGAGAC
CGCAAACGCCGCCAAGCGCGAGTTCCTCGCCAATGTCAGCCACGAGTTGC
GCACGCCGCTCAACGCGATCATCGGCTTTTCCGAATTCGTGGCACTTCAG
ACCTTCGGGCCGATCCACGAGCGCTATCGTGGCTATGTCGGCGACGTGCT
TTCGGCCGGCCGGCACCTGCTGGGGATCGTCGCCCAGCTTCTCGATCTGG
CGGCCATCGAGGCA
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