mRNA_P-wetherbeei_contig20692.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20692.1.1
Unique NamemRNA_P-wetherbeei_contig20692.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20692.1.1 vs. uniprot
Match: A0A6H5KR11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR11_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.920e-21
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = 1 
Query:  253 PLPTNRELVRLELKEVPAEAARKWLRDWGGRRVPDRPDVDAP--------------GVPRTNMPVTAEVKDGGAGIRLSFDASPTDTVELDVYPLARGASCVVASVGDDGAARQGMLGPQIEALVRQAQERIELKLQRDTNAFARDYH 654
            P     ELVRL++ EVP + A+ ++R+W  RRV   P+VD                GVP T+MPV+    + GA   LSFD SP+D + ++V+ L RG SCV+ + G DG AR G +GPQI +LVR +++ I+ KLQ D  +FA  YH
Sbjct:  140 PAQPGAELVRLDMAEVPVDRAQSFVRNWAKRRV--GPEVDPGWKGTVRLAQARPKYGVPPTDMPVSDSRTNLGA--TLSFDGSPSDVINIEVFYLRRGGSCVMVTRGLDGLARLGGMGPQIASLVRHSEDVIKDKLQDDLASFADGYH 283
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BLAST of mRNA_P-wetherbeei_contig20692.1.1 vs. uniprot
Match: D7G3H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 9.500e-21
Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 1 
Query:  253 PLPTNRELVRLELKEVPAEAARKWLRDWGGRRVPDRPDVDAP--------------GVPRTNMPVTAEVKDGGAGIRLSFDASPTDTVELDVYPLARGASCVVASVGDDGAARQGMLGPQIEALVRQAQERIELKLQRDTNAFARDYH 654
            P     ELVRL++ EVP + A++++ +W  RRV   P+VD                GVP T+MPV+    + GA   LSFD SP+D + ++V+ L RG SCV+ + G DG AR G +GPQI +LVR +++ I+ KLQ D  +F  DYH
Sbjct:   26 PAQPGAELVRLDMAEVPVDRAQRFVWNWAKRRV--GPEVDPGWKGTVRLAQARPKYGVPPTDMPVSDSRTNLGA--TLSFDGSPSDVINIEVFYLRRGGSCVMVTRGLDGLARLGGMGPQIASLVRHSEDVIKDKLQDDLASFPDDYH 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KR11_9PHAE2.920e-2142.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3H6_ECTSI9.500e-2141.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20692contigP-wetherbeei_contig20692:196..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3H6
PFAMsCS
Model size673
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.56e-21
EggNOG OGs2DKX4@1|root,2S63Q@2759|Eukaryota
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186206.357233-CDS-P-wetherbeei_contig20692:195..8671683186206.357233-CDS-P-wetherbeei_contig20692:195..867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20692 196..867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20692.1.1prot_P-wetherbeei_contig20692.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20692 196..867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20692.1.1

>prot_P-wetherbeei_contig20692.1.1 ID=prot_P-wetherbeei_contig20692.1.1|Name=mRNA_P-wetherbeei_contig20692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MPRRRQSAASAALPPLLWLAGLQSVDPFCLLPVALKTWISSRPHIVFKPN
QRPPATCQQCSMVRPLLSATMTADVASEDAPGGPPLPTNRELVRLELKEV
PAEAARKWLRDWGGRRVPDRPDVDAPGVPRTNMPVTAEVKDGGAGIRLSF
DASPTDTVELDVYPLARGASCVVASVGDDGAARQGMLGPQIEALVRQAQE
RIELKLQRDTNAFARDYHHSAVAA
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mRNA from alignment at P-wetherbeei_contig20692:196..867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20692.1.1 ID=mRNA_P-wetherbeei_contig20692.1.1|Name=mRNA_P-wetherbeei_contig20692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig20692:196..867+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAAGGCGACGACAATCAGCGGCGTCTGCGGCCCTTCCGCCGCTCCT
ATGGCTAGCAGGATTGCAGTCTGTCGACCCTTTTTGCCTCCTCCCAGTCG
CATTGAAAACGTGGATATCTTCGCGACCTCACATCGTCTTCAAGCCAAAT
CAAAGGCCGCCAGCGACGTGCCAGCAATGCTCAATGGTAAGACCCTTGCT
GTCAGCAACGATGACCGCGGACGTGGCTAGCGAAGACGCCCCTGGCGGCC
CTCCGCTCCCCACAAACCGCGAACTCGTACGCCTGGAGCTCAAGGAGGTC
CCGGCCGAGGCCGCGCGCAAATGGCTTAGAGATTGGGGCGGCAGGCGCGT
CCCCGACCGCCCGGACGTCGACGCCCCGGGCGTGCCGCGCACCAACATGC
CGGTGACCGCCGAGGTCAAGGACGGCGGCGCCGGCATCCGCCTCTCGTTC
GACGCCAGCCCGACCGACACTGTCGAGCTGGACGTCTACCCGCTGGCGCG
CGGCGCCAGCTGCGTCGTCGCCTCCGTCGGCGACGATGGCGCGGCCCGCC
AGGGCATGCTCGGCCCTCAGATTGAGGCGCTCGTCCGGCAGGCGCAGGAG
CGCATCGAGCTGAAGCTCCAGCGGGATACCAACGCCTTCGCGCGCGACTA
TCACCACAGCGCCGTCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20692:196..867+

>mRNA_P-wetherbeei_contig20692.1.1 ID=mRNA_P-wetherbeei_contig20692.1.1|Name=mRNA_P-wetherbeei_contig20692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig20692:196..867+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAAGGCGACGACAATCAGCGGCGTCTGCGGCCCTTCCGCCGCTCCT
ATGGCTAGCAGGATTGCAGTCTGTCGACCCTTTTTGCCTCCTCCCAGTCG
CATTGAAAACGTGGATATCTTCGCGACCTCACATCGTCTTCAAGCCAAAT
CAAAGGCCGCCAGCGACGTGCCAGCAATGCTCAATGGTAAGACCCTTGCT
GTCAGCAACGATGACCGCGGACGTGGCTAGCGAAGACGCCCCTGGCGGCC
CTCCGCTCCCCACAAACCGCGAACTCGTACGCCTGGAGCTCAAGGAGGTC
CCGGCCGAGGCCGCGCGCAAATGGCTTAGAGATTGGGGCGGCAGGCGCGT
CCCCGACCGCCCGGACGTCGACGCCCCGGGCGTGCCGCGCACCAACATGC
CGGTGACCGCCGAGGTCAAGGACGGCGGCGCCGGCATCCGCCTCTCGTTC
GACGCCAGCCCGACCGACACTGTCGAGCTGGACGTCTACCCGCTGGCGCG
CGGCGCCAGCTGCGTCGTCGCCTCCGTCGGCGACGATGGCGCGGCCCGCC
AGGGCATGCTCGGCCCTCAGATTGAGGCGCTCGTCCGGCAGGCGCAGGAG
CGCATCGAGCTGAAGCTCCAGCGGGATACCAACGCCTTCGCGCGCGACTA
TCACCACAGCGCCGTCGCCGCC
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