mRNA_P-wetherbeei_contig20610.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20610.1.1
Unique NamemRNA_P-wetherbeei_contig20610.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: UPI00146CB20F (LuxR C-terminal-related transcriptional regulator n=1 Tax=Nevskia ramosa TaxID=64002 RepID=UPI00146CB20F)

HSP 1 Score: 407 bits (1046), Expect = 7.160e-131
Identity = 214/404 (52.97%), Postives = 275/404 (68.07%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTLRRV 1212
            LLL+ A AGYGKTS+LV+ H +L     S+ W SLD++D D  RF+S+LV+ ++RT   F   LA  L   A + + TL++ LLNEL+ +D++ ++  DDYH+I D ++R  V AILL+P+P +HFLIATR  NELPVSRL+ L Q  E+  ADL FS LE  +F+   S   L E Q+ RLRE TEGW ASLQ+  IAL+   D+  FL  FSGE R++G+FLG+EVLRRQP+ LQDFLLA++IL RFN SL+ AV   ++ RA+IDE E RNLF+FSLD + HWYRYHHLFSDFL+RRL DR PD+    HR A+ W  +H   IEAI HAF   D   AG+LLD +   LFAAGQ  +L   ++RLP ++L RLPRLQLE  W  EL W+   A   L  V
Sbjct:   42 LLLVCAPAGYGKTSVLVRAHSQLKAAGRSVGWISLDESDKDLSRFISYLVDAVRRTGIRFGQGLAILLSGGASLPSDTLKTLLLNELSTLDQDLFLILDDYHLIADEDIRDLVNAILLSPIPHIHFLIATRTHNELPVSRLRALGQLHEVAVADLMFSELEVGEFVAKVSGVQLSEAQVTRLREGTEGWVASLQMVGIALSDSGDIDHFLDRFSGEHRSIGDFLGEEVLRRQPEELQDFLLATSILNRFNCSLSNAVLERENGRAMIDEIERRNLFVFSLDAEHHWYRYHHLFSDFLRRRLKDRHPDRAAEYHRHASRWLAEHRFMIEAIGHAFNAGDSARAGELLDRASGDLFAAGQTATLLSLSSRLPGELLHRLPRLQLECAWHSELSWKFTDAKLALEHV 445          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: A0A4R7PEE9_9GAMM (LuxR family maltose regulon positive regulatory protein n=2 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7PEE9_9GAMM)

HSP 1 Score: 395 bits (1015), Expect = 2.850e-126
Identity = 204/404 (50.50%), Postives = 276/404 (68.32%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTLRRV 1212
            L L+ A AGYGKTS+L Q   RLA+    +CW SLD+ D D  RF+ +LV+ +++T   F   L+  L +   +   TL++ LLNELA +D+E ++F DDYH+++  ++R  +AA++L+P+  LHFLIA+R  NELPVSRL+ L Q  E+E ADL F+  E S+F+G      L + Q+ RLR+ TEGWAASLQ+A IAL G+ DV  FL  F+G  +++G+FL DEVLRRQ   LQ+FL+A++IL +FN+ L  AV     SRA+IDE E  NLF+FSLD + HWYRYHHLFSDFL+RRL++R+P  V G HRRA+ W  DH    +AI+H+F   D   AG+LLD SC+ LFAAGQ  +L   ++RLP+ +  RLPRLQLEL W  EL W+   AT  + RV
Sbjct:   42 LQLVCAPAGYGKTSVLAQAFARLAEDGHKVCWVSLDEGDQDLSRFILYLVDAIRQTGVRFGQGLSTLLGSGVSVPGDTLKTLLLNELAGLDQEVHIFLDDYHLVLGPDIREVIAALMLSPMRTLHFLIASRTPNELPVSRLRALGQIHEVEIADLMFTESEVSEFVGTVRGTPLSKTQVTRLRDETEGWAASLQMAGIALRGIGDVDTFLNGFTGAHKSIGDFLSDEVLRRQSPELQEFLIATSILRKFNSGLCDAVMETHGSRAMIDEVERLNLFLFSLDTEHHWYRYHHLFSDFLRRRLNERFPHLVVGYHRRASRWLADHRFVTDAIDHSFQANDLDRAGELLDSSCSDLFAAGQTTTLVSMSSRLPESLRERLPRLQLELAWSSELSWKFADATIAIDRV 445          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: A0A4V3UR66_9GAMM (LuxR family maltose regulon positive regulatory protein n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4V3UR66_9GAMM)

HSP 1 Score: 391 bits (1004), Expect = 1.190e-124
Identity = 207/401 (51.62%), Postives = 277/401 (69.08%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTL 1203
            L+LI AGAGYGKTSLL QVHE L  +  S+ W SLD++DND  RFL+HL+E ++R+   F  +    LR+  P+  + LRS LLNEL A+  + Y+F DDYH+I D EVRATV  +LLA LP++H L+A+R  NELP+ RL+ L    EI++ DLAFS  E +  +G +    LD +Q++ +RE+TEGWAASLQLA+IAL   DDV   L  FSGE+R++GE L  EVL RQ   +++FLL ++IL +FNA LA AV A D+SR+++D  E++NLFIFSLD  R+WYRYHHLF +FL+R+L DR PD V  LH+RA AW    G   EAI+HA    D   A  LLDE+  QLFA GQIR+L+++   LP + + +LP LQLEL+W  +L W+   A ++L
Sbjct:   42 LVLIVAGAGYGKTSLLGQVHEALLGRSRSVGWISLDESDNDLARFLAHLIEPIRRSDAQFGLSTDSLLRSGVPLPPSILRSSLLNELTALQGDLYLFLDDYHLITDTEVRATVNDLLLATLPRVHLLVASRSANELPIGRLRALGHLAEIQAEDLAFSDDEATDLLGRSGRYALDRSQVSLIREKTEGWAASLQLASIALRDADDVQRVLDSFSGESRSIGELLSAEVLSRQSAEVREFLLFTSILRQFNAGLANAVCARDNSRSILDTVESQNLFIFSLDDHRNWYRYHHLFQEFLRRQLTDRHPDLVATLHQRAVAWLTAQGSVPEAIDHALQAGDIAQAAALLDEASTQLFATGQIRTLERYVGMLPTKRVRQLPVLQLELSWHEQLEWRFDEARESL 442          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: A0A4P6GW43_9BURK (HTH luxR-type domain-containing protein n=1 Tax=Methylibium sp. Pch-M TaxID=2082386 RepID=A0A4P6GW43_9BURK)

HSP 1 Score: 366 bits (939), Expect = 5.160e-115
Identity = 196/398 (49.25%), Postives = 250/398 (62.81%), Query Frame = 1
Query:   10 ITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTL 1203
            + A AGYGKTSLL QV   + +   +  W S+D+ DND  RFL HLVE L+  +P    A    LR+   + A  L++ LLNEL  IDR+ ++F DD+H+I D  V AT+ AILLAPL +LH L+ATR    LP+S+L+     LEI   DL FSA E   F    +   +  + +  L  RTEGW A LQ AAIAL   DD   FL  FSG+   VG+FL DEV  RQP  +QDFLLA+ IL RF+  L  AVT   D R  +D+ E  NLF+FSLD ++ WYRYHHLFS+FLQRRLH+R P++   LHRRA  W   HG  ++AIEHAF   D+  A +LLD + A LFAAGQ+ S++ +AARLP+ +  R P+LQL+L WD EL WQ   A   L
Sbjct:   46 LVAPAGYGKTSLLTQVRHEIERSAAATGWLSVDEEDNDLGRFLLHLVEALRSDAPHAGQATLALLRSGVSLPATVLKTTLLNELVGIDRDVFLFIDDFHLITDRSVIATLQAILLAPLERLHLLVATRDARTLPLSQLRVRGDLLEIGVQDLKFSAAEVGDFFARQNGVPISPDLIGLLHGRTEGWVAGLQFAAIALRDNDDPRRFLARFSGQHCNVGDFLADEVFERQPAPVQDFLLATCILKRFDTGLCNAVTETTDGREHLDQLERANLFVFSLDSEKQWYRYHHLFSEFLQRRLHERHPERWVALHRRACDWLAAHGHVVDAIEHAFAAQDEPLAARLLDAASAHLFAAGQVASIRSYAARLPEPLAARCPQLQLDLAWDCELHWQFLEARQAL 443          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: A0A5E4UAH6_9BURK (Serine/threonine-protein kinase PknK n=1 Tax=Pandoraea terrae TaxID=1537710 RepID=A0A5E4UAH6_9BURK)

HSP 1 Score: 365 bits (937), Expect = 1.180e-114
Identity = 202/408 (49.51%), Postives = 269/408 (65.93%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPM----SAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTLRRV 1212
            LLL++A AGYGKTS+L Q  + L+ Q   + W S+D  DND VRF++H+ E ++R+  S        L A        S A L++++LNELA +  + ++F DD+H+I +  +   V A+LLAPL KLH ++A RG+ +LPV+RL+ L    EIE+  LAFS+ ETS F+ +A    L  +Q  +LR+RTEGWAASLQ+AAIA+   DDV  FL++F+G  R+V +FL +EVL+ Q   +Q FLLA++IL RFNA LA AV  C DSR  ID  E+ NLFIFSLD +R+WYRYHHLFSD L+RRL+DR PD   G HRRA  W   H LP +AIEHAF   D   AG L+D +   LFA+GQ  +LQ HA RLP  +L  LPRLQLE+ W+  +RW+   A + L  V
Sbjct:   43 LLLVSAPAGYGKTSILAQCFDLLSTQRRHVAWISVDPEDNDIVRFVAHVTEAIRRSGVSIDQDPKSILHAGIIPGLIPSPAALKAEMLNELARLRGDLFLFLDDFHLIEERGISDLVGALLLAPLEKLHVVVAARGQPKLPVARLRALGDIHEIEAQALAFSSEETSAFVQSAGGVTLSPSQTEQLRKRTEGWAASLQMAAIAMRCADDVEAFLRQFTGADRSVADFLIEEVLKYQSDDIQRFLLATSILDRFNADLANAVLECPDSRLFIDRIESLNLFIFSLDRERNWYRYHHLFSDLLRRRLNDRQPDLAVGYHRRACDWLAAHDLPTDAIEHAFAIKDVVRAGALIDAASTGLFASGQTTTLQAHADRLPAALLKTLPRLQLEMAWENMIRWRFDDAREALNDV 450          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: UPI001E5963C9 (LuxR C-terminal-related transcriptional regulator n=1 Tax=Nitrogeniibacter aestuarii TaxID=2815343 RepID=UPI001E5963C9)

HSP 1 Score: 344 bits (882), Expect = 2.110e-106
Identity = 191/404 (47.28%), Postives = 250/404 (61.88%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTLRRV 1212
            LLL++A AGYGKTS LVQVHE L  Q     W SLD  DND   FL+++V T++R  P F       L +   +    LR+  +N+L A  ++ Y+F DDYH++   EV   + A L APL  LH L+++R  + LPVSRL+T D    IE+ DL+FS  E   FI   S   L E+Q  RL ERTEGWA  LQ+AAIA+ G  ++  FL +FSG+ R + +FL DEV   Q   +QDFLL ++IL RFN SL  AVT  +DSRA++DE E  NLF+F+LD  +HWYRYHHLF+  L++RL ++ P+ V  LH RA+ W   H L  EA+EHAF   D   A  LLD   A+LFA GQ  +L    +RL + VL RLPRLQL+L W +EL W+   A + L  V
Sbjct:   69 LLLVSAPAGYGKTSTLVQVHECLGDQGLKPAWLSLDQEDNDFTHFLAYVVFTIRRQHPDFGHGCNALLNSGVYVPPHVLRNTFINDLHAYRQDIYLFLDDYHLVTAPEVLDAINAALTAPLEHLHLLVSSRHMDNLPVSRLRTTDAVEVIEATDLSFSVAEARDFIAQLSISGLSEDQARRLCERTEGWATGLQMAAIAMRGKANLEEFLNDFSGKHRNIADFLIDEVFASQRPEIQDFLLQTSILNRFNVSLCNAVTEREDSRAMLDELERVNLFVFALDADQHWYRYHHLFAQLLRKRLQEQDPNLVSILHLRASEWAALHDLGFEAVEHAFAGGDADRAASLLDRFSARLFARGQTAALTGFTSRLSRDVLARLPRLQLDLAWYFELCWRFPEAQEALNLV 472          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: UPI0012EE39B1 (LuxR C-terminal-related transcriptional regulator n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI0012EE39B1)

HSP 1 Score: 343 bits (880), Expect = 2.630e-106
Identity = 199/402 (49.50%), Postives = 248/402 (61.69%), Query Frame = 1
Query:    4 LLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAG-ALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTLR 1206
            ++ITA AGYGKTSLL QV   +A    +  W SLD  DND   FL H VE + R   S AG A    LR+   +  + L++ LLNELAAI++   +F DD+H+I D  V ATV AILLAPL     LIATR  + LP+S L+  +  LE+   +L FSA E  +F    +   L  + L+ L ERTEGW A LQ AAIAL    D   FL  FSGE R VG+FL DEV  RQ   +QDFLLA+ IL RF+ +L  AVT   D+R+++D  E+ NLFIFSLD ++ WYRYHHLF++FLQRRL +R PD    LH RA  W   HG  ++AI HAF   D+ FA +LLD +   LFA GQ  ++Q  A+RLP  V    PRLQL+L WD ELRWQ   A   LR
Sbjct:   56 VVITAPAGYGKTSLLAQVRRHIAPNAIT-GWLSLDAGDNDLGHFLLHFVEAI-RAGGSHAGQATLALLRSGVGLPPSVLKATLLNELAAIEKNTLLFIDDFHLITDEAVIATVQAILLAPLGHFRLLIATRTAHTLPMSPLRLRNAVLELGGQELRFSAPEVGEFFARQNGSPLAPDVLSLLHERTEGWVAGLQFAAIALRDSSDPQQFLARFSGEHRDVGDFLADEVFGRQSPDVQDFLLATCILKRFDTALCNAVTRQQDARSVLDRLESGNLFIFSLDSEKRWYRYHHLFAEFLQRRLRERQPDHHAELHARACRWLAAHGFTLDAIAHAFAAGDEAFAAELLDTASPHLFATGQFATVQALASRLPPAVAADCPRLQLDLAWDCELRWQFPQARHALR 455          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: UPI00047FB8E9 (LuxR C-terminal-related transcriptional regulator n=1 Tax=Paraburkholderia oxyphila TaxID=614212 RepID=UPI00047FB8E9)

HSP 1 Score: 336 bits (862), Expect = 1.500e-103
Identity = 180/401 (44.89%), Postives = 251/401 (62.59%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTL 1203
            L ++TA AGYGKTS+L Q+H+ +  +   + W S+D+ DND  RFL H VE ++        A    LR+   + A  L+S LLNELA +D++ ++F DDYH+I + EV   V A+LLAP+  +   I TR  N LP+S+L+   + LE+ SADL FS LE  +F    +   L  +Q+  L  RTEGW A LQ AAIA+   ++V  FL+ FSG+ R VGEFL +EV  RQP  ++ FLL + IL RF+ +L  AV    D+R ++D  E+ NLFIFSLD +R WYRYHHLF+D+LQRRL +    +   LHRRA+ W  +HG  +EAIEHA    D   A +LLD +  QLFA G++ +L+  A R+P ++    P+LQL+L WD+EL W+   A  +L
Sbjct:   43 LSVLTAPAGYGKTSVLTQLHDEINNRGQIVGWLSIDEDDNDLGRFLLHFVEAMRLGGARTGHATLALLRSGVGLPAGVLKSTLLNELAGLDQDCFLFLDDYHLIHECEVTDIVKAVLLAPIAHVRIFIGTRDANALPLSKLRLRGELLEMNSADLCFSELEVDEFFSRQNGITLGGDQIGLLCHRTEGWVAGLQFAAIAMRDSNEVTKFLERFSGQQRNVGEFLANEVFDRQPPEVRQFLLGTCILGRFDTALCNAVMERPDARLMLDRLESANLFIFSLDDERRWYRYHHLFADYLQRRLQEYDSVQFRELHRRASGWLAEHGFTVEAIEHALKADDVTGAARLLDAASPQLFANGRVATLRSLAQRMPSELTSHCPQLQLDLAWDHELSWRFPQARQSL 443          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: A0A6C1B4D9_9RHOO (HTH luxR-type domain-containing protein n=1 Tax=Nitrogeniibacter mangrovi TaxID=2016596 RepID=A0A6C1B4D9_9RHOO)

HSP 1 Score: 322 bits (825), Expect = 5.060e-98
Identity = 180/401 (44.89%), Postives = 238/401 (59.35%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTL 1203
            L+L++A AGYGKTSLLVQ  E L     +  W SLD  DND   FLS++V TL    PSF       L +   +    LR+  +N+L A     Y+FFDD+H+I   EV   V  +L   L  +H L+++R  + LP+SRL+       IE+ DL+FS  E   F+    S  L       L +RTEGWA  LQ+AAIAL    D+  FL +FSG  R V +FL DEV   QP  +Q+FLL+++IL RFN SL  AV   +DSRA++DE E  NLFIF+LD +R+WYR+HHLF+  L++RL +  P     LH RA+ W   H L  EA+EHAF   D   A QLLD+  A+LFA GQ  +L +  ++LP +VL RLPRLQL+L W  EL W+   A + L
Sbjct:   75 LILVSAPAGYGKTSLLVQTFESLKSLRLAPAWLSLDKEDNDLTHFLSYVVSTLLADHPSFGHGSTALLNSGVYVPPGVLRNTFINDLHAFREPIYLFFDDFHLITAPEVLDLVNTVLNTQLAHVHLLVSSRHMDNLPLSRLRAAGAVEVIEAKDLSFSVDEARNFVSQFGSIGLSSTHAQTLCQRTEGWATGLQMAAIALRSRPDIDHFLSDFSGANRNVADFLIDEVFSSQPPVIQEFLLSTSILNRFNVSLCNAVVGREDSRAMLDELERANLFIFALDTERNWYRFHHLFTQLLRKRLQESHPGLARELHLRASEWSAAHDLGFEAVEHAFAADDVDRAAQLLDQFSARLFALGQTSALTRFTSKLPPRVLERLPRLQLDLAWFMELTWRFDEAREAL 475          
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Match: A0A7W8T4L7_9BURK (LuxR family maltose regulon positive regulatory protein n=1 Tax=Paraburkholderia sp. MM5384-R2 TaxID=2723097 RepID=A0A7W8T4L7_9BURK)

HSP 1 Score: 318 bits (815), Expect = 9.420e-97
Identity = 187/409 (45.72%), Postives = 256/409 (62.59%), Query Frame = 1
Query:    1 LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLVETLQRT---SPSFAGALAFTLRAAAPMS-AATLRSKLLNELAAIDREHYVFFDDYHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEIESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIALNGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFNASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRRLHDRWPDKV-EGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESCAQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDTLRRV 1212
            L+LITA AGYGKTSLL QV E LA Q   + W S+D  DND +RF +HL + +        +F   +A    +A  +  AATL+++LLN LA++ ++ Y+FFDD+H+I   +V    +AILLA L +LH ++A R   +LP+ RL+ L +  EI + DLAFS+ ET+  I  A    +  +Q+ RL E+TEGW  SLQLAA A+    D   F++EF+G  R VG+FL +EV++  P  + +FL+A++IL RF A LA AV    DSR+ ID  E++N+F+FSLD +R WYRYHHLFS+ L++RL D   D V    HRRA  W    G   +AI HAF   D   AG LLD +   LFAAGQ  +L   A+RLP  +L RLPRLQLEL W  E++W+   A + +  V
Sbjct:   43 LVLITAPAGYGKTSLLGQVIESLAVQRYPVAWISIDQDDNDLMRFFAHLWKAVSAALGERNTFQSLVALQGVSAGYLPPAATLKAELLNLLASLKQDLYLFFDDFHLIEHPDVLELTSAILLASLNRLHVIVAARHIPKLPIPRLRALGELHEITTDDLAFSSEETTALIDAAGGICVSPDQVKRLHEKTEGWVVSLQLAAFAIQSTGDTEAFIREFTGAGRDVGDFLMEEVVKSLPDDMHEFLIATSILDRFTAELADAVLLRKDSRSRIDRLESQNMFLFSLDRERIWYRYHHLFSELLRKRLPDSSCDAVMPEYHRRACTWLESRGHITDAIRHAFACGDLDRAGDLLDTASTTLFAAGQASTLHSLASRLPAAILNRLPRLQLELAWTNEIQWRFEEAREEISNV 451          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20610.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00146CB20F7.160e-13152.97LuxR C-terminal-related transcriptional regulator ... [more]
A0A4R7PEE9_9GAMM2.850e-12650.50LuxR family maltose regulon positive regulatory pr... [more]
A0A4V3UR66_9GAMM1.190e-12451.62LuxR family maltose regulon positive regulatory pr... [more]
A0A4P6GW43_9BURK5.160e-11549.25HTH luxR-type domain-containing protein n=1 Tax=Me... [more]
A0A5E4UAH6_9BURK1.180e-11449.51Serine/threonine-protein kinase PknK n=1 Tax=Pando... [more]
UPI001E5963C92.110e-10647.28LuxR C-terminal-related transcriptional regulator ... [more]
UPI0012EE39B12.630e-10649.50LuxR C-terminal-related transcriptional regulator ... [more]
UPI00047FB8E91.500e-10344.89LuxR C-terminal-related transcriptional regulator ... [more]
A0A6C1B4D9_9RHOO5.060e-9844.89HTH luxR-type domain-containing protein n=1 Tax=Ni... [more]
A0A7W8T4L7_9BURK9.420e-9745.72LuxR family maltose regulon positive regulatory pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20610contigP-wetherbeei_contig20610:2..1213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122603.ATVI01000006_gene398
Preferred nameacoK
PFAMsAAA_25,GerE,TPR_12
Model size1212
Max annot lvl135614|Xanthomonadales
KEGG koko:K03556
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.24e-132
EggNOG OGsCOG2909@1|root,COG2909@2|Bacteria,1MVZZ@1224|Proteobacteria,1RN29@1236|Gammaproteobacteria,1X3EM@135614|Xanthomonadales
Descriptiontranscriptional regulator
Cds size1212
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.5702224-CDS-P-wetherbeei_contig20610:1..12131683186204.5702224-CDS-P-wetherbeei_contig20610:1..1213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20610 2..1213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20610.1.1prot_P-wetherbeei_contig20610.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20610 2..1213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20610.1.1

>prot_P-wetherbeei_contig20610.1.1 ID=prot_P-wetherbeei_contig20610.1.1|Name=mRNA_P-wetherbeei_contig20610.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=404bp
LLLITAGAGYGKTSLLVQVHERLAQQHTSLCWFSLDDADNDHVRFLSHLV
ETLQRTSPSFAGALAFTLRAAAPMSAATLRSKLLNELAAIDREHYVFFDD
YHVIVDAEVRATVAAILLAPLPKLHFLIATRGRNELPVSRLKTLDQALEI
ESADLAFSALETSQFIGNASSKHLDENQLARLRERTEGWAASLQLAAIAL
NGVDDVAGFLQEFSGETRAVGEFLGDEVLRRQPQYLQDFLLASAILTRFN
ASLARAVTACDDSRALIDEAEARNLFIFSLDGQRHWYRYHHLFSDFLQRR
LHDRWPDKVEGLHRRAAAWFMDHGLPIEAIEHAFLTADKGFAGQLLDESC
AQLFAAGQIRSLQKHAARLPQQVLWRLPRLQLELTWDYELRWQLRAATDT
LRRV
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mRNA from alignment at P-wetherbeei_contig20610:2..1213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20610.1.1 ID=mRNA_P-wetherbeei_contig20610.1.1|Name=mRNA_P-wetherbeei_contig20610.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1212bp|location=Sequence derived from alignment at P-wetherbeei_contig20610:2..1213+ (Phaeothamnion wetherbeei SAG_119_79)
TTGCTGCTGATTACGGCCGGCGCCGGTTACGGCAAGACCAGTCTGCTGGT GCAGGTTCACGAACGGCTTGCCCAGCAGCACACGAGTCTGTGCTGGTTCA GTCTCGACGACGCCGACAACGATCACGTCCGCTTCCTCTCCCATCTGGTC GAGACCTTGCAGCGCACCAGCCCGTCCTTCGCGGGCGCGCTCGCCTTTAC GCTGCGCGCCGCCGCGCCGATGAGCGCCGCCACCCTGCGCAGCAAGCTGT TGAACGAACTGGCCGCTATCGACCGCGAGCACTATGTGTTCTTCGACGAC TATCACGTGATCGTGGACGCCGAGGTACGCGCCACTGTGGCGGCGATATT GCTGGCACCACTGCCGAAGCTGCATTTTCTGATCGCGACGCGTGGTCGCA ATGAATTGCCCGTCAGCCGCCTCAAGACACTCGATCAGGCGCTCGAAATC GAGAGCGCCGATCTGGCGTTCTCGGCACTCGAGACCAGCCAGTTCATCGG CAATGCCAGCAGCAAACACCTCGACGAAAATCAGCTTGCGCGGCTGCGTG AACGCACCGAAGGCTGGGCTGCGAGCCTGCAACTCGCCGCGATTGCCTTG AACGGTGTCGACGACGTGGCGGGCTTTCTGCAGGAGTTCTCCGGCGAGAC CCGCGCCGTCGGCGAGTTTCTCGGCGACGAGGTACTGCGCCGACAGCCGC AGTATCTGCAGGATTTTCTGCTGGCGAGCGCCATCCTGACGCGCTTCAAT GCCAGCCTGGCCCGCGCTGTGACAGCTTGCGACGACAGTCGCGCTTTGAT CGATGAAGCGGAAGCGAGGAACCTGTTCATCTTCTCGCTCGATGGCCAGC GACACTGGTATCGCTATCACCATCTGTTCAGCGATTTTCTGCAACGACGT CTGCATGATCGCTGGCCGGATAAGGTCGAAGGGTTGCATCGGCGCGCGGC CGCGTGGTTCATGGACCATGGTCTGCCGATAGAAGCCATCGAGCACGCTT TTCTGACCGCCGACAAGGGCTTCGCCGGGCAGCTGCTCGACGAGAGTTGT GCCCAGCTGTTCGCCGCCGGACAGATTCGCAGCTTGCAGAAGCATGCGGC GCGCCTGCCACAGCAGGTGCTGTGGCGGCTGCCGCGCCTGCAGCTCGAGC TGACCTGGGATTACGAGTTGCGCTGGCAGTTACGCGCAGCTACCGACACG CTGCGACGGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20610:2..1213+

>mRNA_P-wetherbeei_contig20610.1.1 ID=mRNA_P-wetherbeei_contig20610.1.1|Name=mRNA_P-wetherbeei_contig20610.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1212bp|location=Sequence derived from alignment at P-wetherbeei_contig20610:2..1213+ (Phaeothamnion wetherbeei SAG_119_79)
TTGCTGCTGATTACGGCCGGCGCCGGTTACGGCAAGACCAGTCTGCTGGT
GCAGGTTCACGAACGGCTTGCCCAGCAGCACACGAGTCTGTGCTGGTTCA
GTCTCGACGACGCCGACAACGATCACGTCCGCTTCCTCTCCCATCTGGTC
GAGACCTTGCAGCGCACCAGCCCGTCCTTCGCGGGCGCGCTCGCCTTTAC
GCTGCGCGCCGCCGCGCCGATGAGCGCCGCCACCCTGCGCAGCAAGCTGT
TGAACGAACTGGCCGCTATCGACCGCGAGCACTATGTGTTCTTCGACGAC
TATCACGTGATCGTGGACGCCGAGGTACGCGCCACTGTGGCGGCGATATT
GCTGGCACCACTGCCGAAGCTGCATTTTCTGATCGCGACGCGTGGTCGCA
ATGAATTGCCCGTCAGCCGCCTCAAGACACTCGATCAGGCGCTCGAAATC
GAGAGCGCCGATCTGGCGTTCTCGGCACTCGAGACCAGCCAGTTCATCGG
CAATGCCAGCAGCAAACACCTCGACGAAAATCAGCTTGCGCGGCTGCGTG
AACGCACCGAAGGCTGGGCTGCGAGCCTGCAACTCGCCGCGATTGCCTTG
AACGGTGTCGACGACGTGGCGGGCTTTCTGCAGGAGTTCTCCGGCGAGAC
CCGCGCCGTCGGCGAGTTTCTCGGCGACGAGGTACTGCGCCGACAGCCGC
AGTATCTGCAGGATTTTCTGCTGGCGAGCGCCATCCTGACGCGCTTCAAT
GCCAGCCTGGCCCGCGCTGTGACAGCTTGCGACGACAGTCGCGCTTTGAT
CGATGAAGCGGAAGCGAGGAACCTGTTCATCTTCTCGCTCGATGGCCAGC
GACACTGGTATCGCTATCACCATCTGTTCAGCGATTTTCTGCAACGACGT
CTGCATGATCGCTGGCCGGATAAGGTCGAAGGGTTGCATCGGCGCGCGGC
CGCGTGGTTCATGGACCATGGTCTGCCGATAGAAGCCATCGAGCACGCTT
TTCTGACCGCCGACAAGGGCTTCGCCGGGCAGCTGCTCGACGAGAGTTGT
GCCCAGCTGTTCGCCGCCGGACAGATTCGCAGCTTGCAGAAGCATGCGGC
GCGCCTGCCACAGCAGGTGCTGTGGCGGCTGCCGCGCCTGCAGCTCGAGC
TGACCTGGGATTACGAGTTGCGCTGGCAGTTACGCGCAGCTACCGACACG
CTGCGACGGGTG
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