mRNA_P-wetherbeei_contig20595.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: D7G3E5_ECTSI (Spt4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E5_ECTSI) HSP 1 Score: 114 bits (284), Expect = 1.760e-28 Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 4 EGEGEGESASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGG 270
EG E A IP SLK LRACKRC LVK DQ F N GCENCPFL M+ D RV DCT+ YF+GLI+M++P SWV +WQRI E G
Sbjct: 15 EGLDEFAGAEIPTSLKGLRACKRCSLVKGNDQ--FVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPG 101
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.730e-26 Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 22 ESASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
+ A +P LKALRACKRC LVKT Q F +GCENCPFL +++ ERV++CTS+YF+G+I+M+ P+ SWVARWQRI
Sbjct: 19 DMAQVPGELKALRACKRCALVKTLTQ--FTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRI 93
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A1Z5KK11_FISSO (Transcription elongation factor SPT4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK11_FISSO) HSP 1 Score: 102 bits (253), Expect = 7.180e-24 Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
SAS+P +LK +RACKRC L+KT Q FY+EGCENCPFL M D+ ERVN CT+A+F G ++++P SW A+W R+
Sbjct: 22 SASVPLNLKTIRACKRCGLLKT--QGQFYDEGCENCPFLEMTDNMERVNSCTTAFFEGTAAVMDPGESWAAKWIRV 95
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A7S2IAX2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAX2_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.360e-24 Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 1 GEGEGEGE---------SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
GEGE E E A P SL+ +RACKRC ++KT DQ F+NEGCENCPFL M+ TER N CT+A+F G ++++PR SWVA+W R+
Sbjct: 24 GEGEEEEELPEQVLNLAQARTPSSLRGMRACKRCGILKTFDQ--FFNEGCENCPFLQMEGGTERCNRCTTAFFEGQAAVMDPRASWVAKWLRV 114
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A814IDH4_9BILA (Transcription elongation factor SPT4 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814IDH4_9BILA) HSP 1 Score: 100 bits (249), Expect = 1.700e-23 Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCP-FLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
SASIP SLK LRAC+ C L+KT DQ F+NEGC+NC FL ++ + +R+ DCTSA F G+I+M++P+ SWVA+WQRI
Sbjct: 2 SASIPASLKGLRACRVCSLIKTLDQ--FFNEGCDNCERFLRLRGNRDRIIDCTSANFDGMIAMMDPQDSWVAKWQRI 76
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A1J6IFV7_NICAT (Transcription elongation factor spt4-like 2 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IFV7_NICAT) HSP 1 Score: 100 bits (248), Expect = 1.710e-23 Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 13 GEGESASIPQSL-KALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGGGLVHWRKL 294
G ++A IP S LRAC RC LVKT DQ F GCENCPF M +D ERV DCT++ FTGLIS+++P SW ARW RI ++ G G +R L
Sbjct: 2 GSQQAAQIPTSFGHELRACLRCRLVKTYDQ--FRESGCENCPFFKMDEDYERVGDCTTSNFTGLISVMDPTRSWAARWLRIEKNIGSGKCLFRCL 94
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A662XZF9_9STRA (Spt4 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZF9_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.780e-23 Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 22 ESASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
+ A IP + + LRAC C L+KT Q FY+ GCENC FL M D+ +RV +CTSAYF G+I+M++P+ SWVA+WQRI
Sbjct: 20 QHADIPNTFRELRACMTCSLIKTFTQ--FYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRI 94
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A3M7RGB3_BRAPC (Transcription elongation factor SPT4 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RGB3_BRAPC) HSP 1 Score: 99.8 bits (247), Expect = 3.290e-23 Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCP-FLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
SASIP+SL+ +RACK C L+KT DQ F+NEGC+NC FL+++ D +++ DCTS F G+I+M++P SWVARWQ+I
Sbjct: 2 SASIPRSLRGIRACKMCGLIKTMDQ--FFNEGCDNCENFLHLRGDRDQILDCTSENFDGMIAMMDPEDSWVARWQQI 76
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: B7FXW7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXW7_PHATC) HSP 1 Score: 99.8 bits (247), Expect = 5.440e-23 Identity = 40/76 (52.63%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 25 SASIPQSLKALRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 252
+AS+P +LKA+RACKRC ++KT +Q F ++GCENCPFL+M DD ++VN CT+A++ G ++++PR SW A+W R+
Sbjct: 22 NASVPTNLKAVRACKRCGILKTPEQ--FLDDGCENCPFLHMADDMQQVNKCTTAFYEGQAAVMDPRDSWAAKWIRV 95
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A812ZC74_SYMMI (SUPT4H1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZC74_SYMMI) HSP 1 Score: 98.2 bits (243), Expect = 8.720e-23 Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 55 LRACKRCMLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGGGLVHWRKLSE*EDD*AGLQVYFYPGDYTLR 360
+R C RC L+KT DQ FY GCENC FL++ + R+N+CTSAYF G+I+++EP GSWVARWQ+I E++ GL + E D + Y +Y+ R
Sbjct: 1 MRCCLRCSLLKTVDQ--FYESGCENCEFLHLSGNQSRINNCTSAYFAGMIALLEPHGSWVARWQKI-ENAVPGLYAVEVVGELPQD---VIEYCEDNNYSYR 96 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20595.2.1 >prot_P-wetherbeei_contig20595.2.1 ID=prot_P-wetherbeei_contig20595.2.1|Name=mRNA_P-wetherbeei_contig20595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp MLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGback to top mRNA from alignment at P-wetherbeei_contig20595:63..921- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20595.2.1 ID=mRNA_P-wetherbeei_contig20595.2.1|Name=mRNA_P-wetherbeei_contig20595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=859bp|location=Sequence derived from alignment at P-wetherbeei_contig20595:63..921- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20595:63..921- >mRNA_P-wetherbeei_contig20595.2.1 ID=mRNA_P-wetherbeei_contig20595.2.1|Name=mRNA_P-wetherbeei_contig20595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig20595:63..921- (Phaeothamnion wetherbeei SAG_119_79)back to top |