mRNA_P-wetherbeei_contig20594.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20594.1.1
Unique NamemRNA_P-wetherbeei_contig20594.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20594.1.1 vs. uniprot
Match: A0A6M5YZ25_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YZ25_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-15
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 DYPPTVYALRRRIEAALGLTGHPPIEG------HGRDGVVCSVTYDGGDVYAHTDPTVG 159
            +YPPTVYA+++R+ A LGL+G P ++       HGRDGVVCSVTY GGDVY HTDP VG
Sbjct:   59 EYPPTVYAVQKRVAAVLGLSGRPVLDRDASGQRHGRDGVVCSVTYGGGDVYEHTDPGVG 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20594.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M5YZ25_9BACT1.290e-1562.71Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20594contigP-wetherbeei_contig20594:131..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog272560.BPSL1662
Model size378
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.2e-07
EggNOG OGs2EP1W@1|root,33GNR@2|Bacteria,1P9EQ@1224|Proteobacteria
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.7986858-CDS-P-wetherbeei_contig20594:130..5081683186203.7986858-CDS-P-wetherbeei_contig20594:130..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20594 131..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20594.1.1prot_P-wetherbeei_contig20594.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20594 131..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20594.1.1

>prot_P-wetherbeei_contig20594.1.1 ID=prot_P-wetherbeei_contig20594.1.1|Name=mRNA_P-wetherbeei_contig20594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
DYPPTVYALRRRIEAALGLTGHPPIEGHGRDGVVCSVTYDGGDVYAHTDP
TVGPNRAGLRCNVLARAPDGGGTVWVSGVPYTVAAGDLMCYRVTERRHRV
EPCRGGPRVMFMFGWCVPAPDTSGA*
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mRNA from alignment at P-wetherbeei_contig20594:131..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20594.1.1 ID=mRNA_P-wetherbeei_contig20594.1.1|Name=mRNA_P-wetherbeei_contig20594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig20594:131..508- (Phaeothamnion wetherbeei SAG_119_79)
GACTACCCGCCGACCGTCTACGCCCTCCGCCGCCGCATCGAGGCGGCCCT
GGGCCTCACCGGCCACCCGCCCATCGAGGGCCACGGCCGGGACGGCGTCG
TGTGCTCCGTCACCTACGACGGCGGCGACGTGTACGCGCACACCGACCCG
ACCGTCGGCCCGAACCGGGCGGGTCTCCGGTGCAACGTCCTGGCCCGCGC
GCCGGACGGCGGCGGCACCGTCTGGGTGTCGGGCGTGCCGTACACGGTCG
CGGCCGGCGACCTCATGTGCTACCGCGTGACCGAACGGCGGCACCGGGTC
GAACCGTGCCGGGGCGGCCCGCGCGTCATGTTCATGTTCGGCTGGTGCGT
TCCCGCGCCGGACACATCGGGAGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20594:131..508-

>mRNA_P-wetherbeei_contig20594.1.1 ID=mRNA_P-wetherbeei_contig20594.1.1|Name=mRNA_P-wetherbeei_contig20594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig20594:131..508- (Phaeothamnion wetherbeei SAG_119_79)
GACTACCCGCCGACCGTCTACGCCCTCCGCCGCCGCATCGAGGCGGCCCT
GGGCCTCACCGGCCACCCGCCCATCGAGGGCCACGGCCGGGACGGCGTCG
TGTGCTCCGTCACCTACGACGGCGGCGACGTGTACGCGCACACCGACCCG
ACCGTCGGCCCGAACCGGGCGGGTCTCCGGTGCAACGTCCTGGCCCGCGC
GCCGGACGGCGGCGGCACCGTCTGGGTGTCGGGCGTGCCGTACACGGTCG
CGGCCGGCGACCTCATGTGCTACCGCGTGACCGAACGGCGGCACCGGGTC
GAACCGTGCCGGGGCGGCCCGCGCGTCATGTTCATGTTCGGCTGGTGCGT
TCCCGCGCCGGACACATCGGGAGCCTGA
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