mRNA_P-wetherbeei_contig2059.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2059.2.1
Unique NamemRNA_P-wetherbeei_contig2059.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2059.2.1 vs. uniprot
Match: A0A835YKB6_9STRA (TNFR-Cys domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.340e-20
Identity = 124/483 (25.67%), Postives = 167/483 (34.58%), Query Frame = 3 
Query:  327 DRDALAAAGIGHNRSYTWIFLDAGVFTSAAGEAST-----------VLFGIDTLPSTPLSALKVTVDATRPTLVRWTLQREERAIYMFFSEAVDITSADASLLSLSTNSTGXXXXNASVALSCSGTKRGRNELRELIVWLETACVNVTSGSAVDGVGSVMSSWTSQVPWPDAATDWERTLAALGPSLSDAAAGTALFLTAAAGFIDDYALPGNALVAADAVPEGFPDCQPCSPNAAPRTAAP------------NGTYRATPCTA-----------VYDAVCAPCRAXXXXXXXXXXXXXXXXXXXXXXXTPCAYETFEVVPCAGDDIGGGISXXXXXXXXXSSDDSSRNGSDGDRVCAPCRQCTGSIEFEA-------------VDCRRSXXXXXXXXXXXXXDW-----------------------GSETAVWAERV---CLDKPAIRQWRNENCCRDSEGEPVDCHDAILREIEITARR 1556
            D D L  AG+GH    TWIF+ AG   +A    +             + G +      L A  VT D   P L+R TL     A+Y+FF EAVDI +     +SL  +        A+V L+CS    GR   RE+I+ L T C++    +                     ATDW     +L  +  + AA T L  +A  G+I DY +P N   A  A+ +  PDC PC  +     +AP            +GT+ + PCTA            YDA C+ C A                         C  +T+ +  C  +                            D VCA CR C  S                    CR                                        G+  A+ A        D  A+R WR+E+CC+DSE  PV C  A LRE  I ARR
Sbjct:   20 DLDNLKVAGVGHQLGDTWIFMPAGALGAATAARAPSXXXXXXXXXXAVRGQEVYGQRGLVAQAVTPDTAPPLLLRHTLAFAHAALYLFFDEAVDIATLSTGAVSLGVSG------GAAVPLACSAAAYGRWLAREVILDLRTPCLDARGNAT-------------------GATDWS----SLRTAGINGAAPTVL--SAWGGYIADYGIPANEAAAVVAMAKTGPDCSPCVGSTFKFMSAPCNLQYLNPQPCASGTFMSAPCTAHXXXXXXXXXXQYDAACSRCSAA------------------------CPGDTYRLAECTPET---------------------------DLVCAACRDCPTSTYISGGCXXXXXXXXXXXTVCRAQPQGPIEPPLPPQYQLTDXXXXXXXXXXXXXXXPPPRIPGAAAAIAAPSPLGPACDTAAVRTWRDEHCCKDSERRPVACSQAPLREDAIAARR 420
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2059.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YKB6_9STRA1.340e-2025.67TNFR-Cys domain-containing protein n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2059contigP-wetherbeei_contig2059:524..3117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LAW6
Model size1871
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue4.71e-32
EggNOG OGs2CZBK@1|root,2S9J3@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006180.1
Cds size1848
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.5028446-UTR-P-wetherbeei_contig2059:523..5461683186203.5028446-UTR-P-wetherbeei_contig2059:523..546Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2059 524..546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.5133398-CDS-P-wetherbeei_contig2059:546..6071683186203.5133398-CDS-P-wetherbeei_contig2059:546..607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 547..607 +
1683186203.5225444-CDS-P-wetherbeei_contig2059:741..11391683186203.5225444-CDS-P-wetherbeei_contig2059:741..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 742..1139 +
1683186203.5321813-CDS-P-wetherbeei_contig2059:1449..17581683186203.5321813-CDS-P-wetherbeei_contig2059:1449..1758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 1450..1758 +
1683186203.5416012-CDS-P-wetherbeei_contig2059:2037..31171683186203.5416012-CDS-P-wetherbeei_contig2059:2037..3117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2059 2038..3117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2059.2.1prot_P-wetherbeei_contig2059.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2059 547..3117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2059.2.1

>prot_P-wetherbeei_contig2059.2.1 ID=prot_P-wetherbeei_contig2059.2.1|Name=mRNA_P-wetherbeei_contig2059.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=616bp
MHALGSVLLVFCSISVVVCDGGPILKSFTLDMDSSRLSLTWSAAMSAARE
DCDWSGVTLRTQNTAHNSDGASLSYTQSEDGYGTPSLSLSWKQITVEVHP
LDRDALAAAGIGHNRSYTWIFLDAGVFTSAAGEASTVLFGIDTLPSTPLS
ALKVTVDATRPTLVRWTLQREERAIYMFFSEAVDITSADASLLSLSTNST
GGGGGNASVALSCSGTKRGRNELRELIVWLETACVNVTSGSAVDGVGSVM
SSWTSQVPWPDAATDWERTLAALGPSLSDAAAGTALFLTAAAGFIDDYAL
PGNALVAADAVPEGFPDCQPCSPNAAPRTAAPNGTYRATPCTAVYDAVCA
PCRAACPADHYRVAACTAEGDLVCRRCTPCAYETFEVVPCAGDDIGGGIS
GGGISAGTNSSDDSSRNGSDGDRVCAPCRQCTGSIEFEAVDCRRSSGGDR
QCESCERCDWGSETAVWAERVCLDKPAIRQWRNENCCRDSEGEPVDCHDA
ILREIEITARRGRHPIASLEAATAAALTTAGGLAPLSMDLGQRTAIDASS
SSRRRSSSSSSSSSRLSSSMSASDTTGSIADSGGFSSSAFAHERNEGMTR
RGRRRRGRLPAAPAG*
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mRNA from alignment at P-wetherbeei_contig2059:524..3117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2059.2.1 ID=mRNA_P-wetherbeei_contig2059.2.1|Name=mRNA_P-wetherbeei_contig2059.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2594bp|location=Sequence derived from alignment at P-wetherbeei_contig2059:524..3117+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGCCGTGGGAGGACAGGACGAATGCATGCGTTGGGGAGCGTTCTCTTG
GTCTTTTGCAGCATCTCCGTCGTTGTTTGTGATGGTAGGCGCTTTCCACC
GGTCAATTGCCCTGATTTTACCGTTTTTCCCGACTTTCGACCTGTCTCAA
CATCTCTCGTCTTCAGCCTTTTCCTTACCACGTCGTCTTCTCTCTTTTTT
CCCCTCCACATTGAACAGGTGGCCCAATCCTCAAAAGCTTTACGCTCGAC
ATGGATTCCAGCAGGCTGTCTCTAACTTGGAGTGCAGCGATGTCGGCCGC
TCGTGAGGACTGCGACTGGTCAGGCGTCACATTACGTACCCAAAACACGG
CCCATAACTCGGACGGGGCGAGTCTTTCGTACACCCAGTCTGAGGACGGC
TACGGAACTCCGTCGCTTTCATTGTCTTGGAAACAAATAACAGTCGAAGT
CCACCCTCTCGACCGCGACGCTTTGGCGGCCGCCGGCATCGGCCACAACC
GCAGCTATACGTGGATATTTCTTGATGCCGGCGTGTTTACGTCGGCGGCG
GGCGAGGCGTCAACCGTGTTGTTCGGAATCGACACCCTGCCCAGCACCCC
GCTCTCAGCGCTCAAGGTGCACGAATGGGTGAACGCCGAAAAGAGCGTAT
TCTTTTTAGCAGGAGGCTCTCGACTGGTCTTCTTTCATCTTCAGCGTTAT
CATAAGGTTCCATTCCTGCGGTTCCCTGAAACCGGTGACTTGGCGATGCG
CACAGACTTAACATCGTTTCGTTTTCTGAGCGTTCAAAACCTGTCTTTAG
CCTTTTTATTAAAAAGAAGCTCCTGGTCGAAATGTCCATCTCACTGCCGC
TTACTTGTCCTAATGGTACTTGCCATTCCATGCTCCCCTCGGTCGGCGGA
TGGCGGCGGCTTTCGATGCATGACAGGTCACAGTGGACGCCACACGTCCG
ACGCTCGTCCGCTGGACTCTCCAACGCGAAGAGCGCGCCATCTACATGTT
TTTTAGCGAGGCCGTCGACATCACTTCCGCGGACGCTTCCCTCCTCTCTC
TATCTACCAATTCCACCGGTGGCGGTGGCGGCAATGCCTCGGTGGCGCTG
AGCTGCTCCGGGACGAAACGCGGGCGGAACGAGCTGCGGGAGCTGATCGT
GTGGCTGGAAACGGCCTGCGTCAACGTGACAAGCGGCAGCGCCGTGGACG
GCGTCGGCTCTGTCATGTCTTCATGGACATCGCAGGTGAGTAGAGCAAGT
GTGTGGCGGGGGCTTAGCCGGCGGAAATAGAGGTTTTGGCGGAGCCCGCG
GTGGTCAAAAGTGGCTGCGGTTGTGTAAGAGGTATTCTGAACCAGCTCTG
CGTCCTTTGTCGCTTTTCTGTAATGCTTCTATTGAACTTTTCATGTGAAG
TGTCAGGATCAGAAATCAAATGCCATCAATCGCCTGAAAGAGGTCGCTCC
CGCACGGCAAACGAGTAACGTCGTGCTTTCGCCTGACCGCGTCCTCCTTA
TCTTCTTCCCACAGGTGCCGTGGCCCGATGCCGCGACCGATTGGGAGCGC
ACCCTTGCGGCGCTGGGCCCATCCCTCTCTGACGCCGCCGCCGGAACCGC
CCTCTTCCTGACGGCGGCCGCTGGCTTCATCGACGACTACGCCTTGCCGG
GTAACGCCCTCGTCGCCGCGGACGCCGTGCCGGAGGGCTTCCCGGACTGT
CAGCCCTGCAGCCCCAATGCGGCGCCGCGGACCGCCGCGCCCAACGGCAC
CTATCGCGCGACTCCGTGCACGGCGGTCTACGACGCCGTCTGCGCGCCGT
GCCGCGCCGCCTGCCCGGCGGACCACTACCGGGTTGCGGCGTGCACCGCC
GAGGGTGACCTGGTCTGCCGTCGCTGCACACCGTGCGCCTACGAAACATT
TGAAGTGGTGCCCTGCGCCGGCGACGACATTGGCGGTGGCATCAGCGGGG
GTGGCATAAGCGCTGGCACCAATAGCAGCGACGACAGCAGCCGTAACGGC
AGTGACGGCGACCGGGTTTGTGCACCGTGCCGGCAGTGCACCGGCTCAAT
TGAGTTCGAAGCCGTGGACTGCCGGCGAAGCAGCGGCGGCGACCGGCAGT
GCGAGAGCTGCGAGCGCTGCGACTGGGGCAGTGAGACCGCTGTCTGGGCG
GAGCGGGTGTGCCTCGACAAGCCGGCGATACGGCAGTGGCGCAACGAGAA
TTGCTGCCGCGACAGCGAGGGCGAGCCGGTGGACTGCCATGACGCCATCT
TGAGGGAGATCGAAATCACGGCGCGGCGCGGACGGCATCCGATTGCTTCG
CTGGAGGCGGCGACCGCGGCGGCGCTAACGACGGCGGGAGGGCTGGCGCC
GCTGAGCATGGATTTGGGGCAGAGGACGGCCATCGATGCATCAAGCAGCA
GCAGAAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGTAGATTAAGCAGC
AGCATGAGCGCGAGCGATACCACCGGCAGCATCGCCGACAGTGGTGGTTT
TAGCAGCAGTGCGTTTGCCCACGAAAGGAACGAAGGCATGACGAGGCGAG
GCCGCCGAAGGAGGGGAAGGCTGCCCGCTGCGCCAGCCGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2059:524..3117+

>mRNA_P-wetherbeei_contig2059.2.1 ID=mRNA_P-wetherbeei_contig2059.2.1|Name=mRNA_P-wetherbeei_contig2059.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1848bp|location=Sequence derived from alignment at P-wetherbeei_contig2059:524..3117+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATGCGTTGGGGAGCGTTCTCTTGGTCTTTTGCAGCATCTCCGTCGT
TGTTTGTGATGGTGGCCCAATCCTCAAAAGCTTTACGCTCGACATGGATT
CCAGCAGGCTGTCTCTAACTTGGAGTGCAGCGATGTCGGCCGCTCGTGAG
GACTGCGACTGGTCAGGCGTCACATTACGTACCCAAAACACGGCCCATAA
CTCGGACGGGGCGAGTCTTTCGTACACCCAGTCTGAGGACGGCTACGGAA
CTCCGTCGCTTTCATTGTCTTGGAAACAAATAACAGTCGAAGTCCACCCT
CTCGACCGCGACGCTTTGGCGGCCGCCGGCATCGGCCACAACCGCAGCTA
TACGTGGATATTTCTTGATGCCGGCGTGTTTACGTCGGCGGCGGGCGAGG
CGTCAACCGTGTTGTTCGGAATCGACACCCTGCCCAGCACCCCGCTCTCA
GCGCTCAAGGTCACAGTGGACGCCACACGTCCGACGCTCGTCCGCTGGAC
TCTCCAACGCGAAGAGCGCGCCATCTACATGTTTTTTAGCGAGGCCGTCG
ACATCACTTCCGCGGACGCTTCCCTCCTCTCTCTATCTACCAATTCCACC
GGTGGCGGTGGCGGCAATGCCTCGGTGGCGCTGAGCTGCTCCGGGACGAA
ACGCGGGCGGAACGAGCTGCGGGAGCTGATCGTGTGGCTGGAAACGGCCT
GCGTCAACGTGACAAGCGGCAGCGCCGTGGACGGCGTCGGCTCTGTCATG
TCTTCATGGACATCGCAGGTGCCGTGGCCCGATGCCGCGACCGATTGGGA
GCGCACCCTTGCGGCGCTGGGCCCATCCCTCTCTGACGCCGCCGCCGGAA
CCGCCCTCTTCCTGACGGCGGCCGCTGGCTTCATCGACGACTACGCCTTG
CCGGGTAACGCCCTCGTCGCCGCGGACGCCGTGCCGGAGGGCTTCCCGGA
CTGTCAGCCCTGCAGCCCCAATGCGGCGCCGCGGACCGCCGCGCCCAACG
GCACCTATCGCGCGACTCCGTGCACGGCGGTCTACGACGCCGTCTGCGCG
CCGTGCCGCGCCGCCTGCCCGGCGGACCACTACCGGGTTGCGGCGTGCAC
CGCCGAGGGTGACCTGGTCTGCCGTCGCTGCACACCGTGCGCCTACGAAA
CATTTGAAGTGGTGCCCTGCGCCGGCGACGACATTGGCGGTGGCATCAGC
GGGGGTGGCATAAGCGCTGGCACCAATAGCAGCGACGACAGCAGCCGTAA
CGGCAGTGACGGCGACCGGGTTTGTGCACCGTGCCGGCAGTGCACCGGCT
CAATTGAGTTCGAAGCCGTGGACTGCCGGCGAAGCAGCGGCGGCGACCGG
CAGTGCGAGAGCTGCGAGCGCTGCGACTGGGGCAGTGAGACCGCTGTCTG
GGCGGAGCGGGTGTGCCTCGACAAGCCGGCGATACGGCAGTGGCGCAACG
AGAATTGCTGCCGCGACAGCGAGGGCGAGCCGGTGGACTGCCATGACGCC
ATCTTGAGGGAGATCGAAATCACGGCGCGGCGCGGACGGCATCCGATTGC
TTCGCTGGAGGCGGCGACCGCGGCGGCGCTAACGACGGCGGGAGGGCTGG
CGCCGCTGAGCATGGATTTGGGGCAGAGGACGGCCATCGATGCATCAAGC
AGCAGCAGAAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGTAGATTAAG
CAGCAGCATGAGCGCGAGCGATACCACCGGCAGCATCGCCGACAGTGGTG
GTTTTAGCAGCAGTGCGTTTGCCCACGAAAGGAACGAAGGCATGACGAGG
CGAGGCCGCCGAAGGAGGGGAAGGCTGCCCGCTGCGCCAGCCGGATAA
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