mRNA_P-wetherbeei_contig20580.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20580.1.1
Unique NamemRNA_P-wetherbeei_contig20580.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: A0A1Z9ULH9_9GAMM (Pseudouridine synthase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9ULH9_9GAMM)

HSP 1 Score: 320 bits (820), Expect = 2.920e-107
Identity = 151/248 (60.89%), Postives = 191/248 (77.02%), Query Frame = 1
Query:   16 GERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNASGE 759
            GERI K LAR+ WGSRREIER +   R+++N   A  G  + PGD +QLD+GR+  V    Q L VL Y+KPAGVVCTR DE+ RPTIFE LPR++ GRW+N+GRLDINT+GLLLFTN+GELAHRL HP+Y++DREYA R+FG V ++ML  ++ GV+++GE + F+D+V GEG G+N+W+YCVVQ+GR REVR++WESQ V VSRL+RVRFGN MLP DLR G+ +ELG  L    C LVGL  S E
Sbjct:   15 GERIQKALARSDWGSRREIERLIRDRRIKVNNSLAVLGLSIRPGDSIQLDNGRIFEVGLDKQELQVLLYHKPAGVVCTRSDEEGRPTIFEKLPRVKHGRWLNVGRLDINTTGLLLFTNNGELAHRLTHPKYKIDREYAVRVFGNVNEKMLLTIKKGVEVDGEVYSFNDVVAGEGSGSNKWFYCVVQTGRNREVRKIWESQDVTVSRLMRVRFGNXMLPTDLRPGRNLELGTPLVKEXCTLVGLEDSDE 262          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: A0A3D5DFC2_9GAMM (Pseudouridine synthase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DFC2_9GAMM)

HSP 1 Score: 300 bits (768), Expect = 1.350e-99
Identity = 150/242 (61.98%), Postives = 183/242 (75.62%), Query Frame = 1
Query:   13 GGERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALV 738
            GGER+ KVLA+AG+GSRREIE+W+ AGRV +NG     G  V   DR+ LD G+V+R+S GS    V+A NKP GV+CT +D + RPT+   LP+ +  RWI IGRLDINTSGLLLFTN+GELAHRLMHPR+++DREYAARIFGEV    L RL  GV++EGE   FDDIV G G GANRWYYCV++ GR REVRR+WESQ ++V+RLIR RFGN++LP DLR G   E+ G + D LC LV
Sbjct:    7 GGERLQKVLAQAGYGSRREIEKWIAAGRVSVNGVPVSLGTLVVNSDRIALD-GKVVRLSKGSVRTRVIALNKPVGVICTANDPEGRPTVNALLPKRDGVRWIGIGRLDINTSGLLLFTNNGELAHRLMHPRFKIDREYAARIFGEVGARALARLETGVEVEGEICAFDDIVRGNGRGANRWYYCVIRQGRNREVRRMWESQRLQVNRLIRSRFGNVILPRDLRAGDHFEINGVMLDDLCRLV 247          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: A0A523P2I7_9PROT (Pseudouridine synthase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P2I7_9PROT)

HSP 1 Score: 283 bits (723), Expect = 9.140e-93
Identity = 142/245 (57.96%), Postives = 181/245 (73.88%), Query Frame = 1
Query:   19 ERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNAS 753
            +R+HKVLA AG+GSRREIE+W+ AGR+ INGRRAE GA+V   DR+ LD G+ L +   + +  VLA +KP GV+CT  D + RPT    LP+ +  RW+++GRLDINTSGLLLFT++GELAHRLMHPR+ +DREYA R+FG+V    L +L  GV+I+GE + F+D+V+  G GANRWYYCVV+ GR RE+RRLWESQG +VSRLIR RFGNIMLP DL+ G   E+ G +   L  LV    S
Sbjct:    9 KRLHKVLANAGYGSRREIEKWIVAGRLAINGRRAELGAKVVSADRIMLD-GKPLHLRAKTASARVLALHKPEGVICTLRDPRGRPTAHALLPKKDDIRWVSVGRLDINTSGLLLFTDNGELAHRLMHPRHEIDREYAVRVFGDVSVGTLSKLTRGVEIDGETYAFEDVVKRGGRGANRWYYCVVRQGRNREIRRLWESQGCQVSRLIRSRFGNIMLPRDLKAGAYFEVKGIMLTDLYRLVNFTKS 252          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: UPI001E56E81D (pseudouridine synthase n=1 Tax=Marinibactrum halimedae TaxID=1444977 RepID=UPI001E56E81D)

HSP 1 Score: 276 bits (706), Expect = 6.740e-90
Identity = 139/255 (54.51%), Postives = 183/255 (71.76%), Query Frame = 1
Query:   19 ERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNASGEELRSAAPR 783
            E++ KVLAR+G GSRRE+ER +  GR+++NG  A  G RV   +++++D GR++ V   ++A  VL YNKP G +CTR D + R T+F+ LP+++RGRWI++GRLD NTSGLLLFTN GELA+RLMHP   +DREY  RI G+V+D+ML RLR GV +E     F DIVEG G+G N+WYYCVV  GR REVRRLWESQGV+VSRL RVR+GNI +P+ +R GQ +EL       LCA  G+ A  + +   A +
Sbjct:    5 EKLQKVLARSGIGSRREMERAIADGRIKVNGAVATLGDRVTGEEKIEVD-GRLVTVESTAEAPRVLLYNKPEGEICTRSDPEGRKTVFDRLPKLKRGRWISVGRLDFNTSGLLLFTNDGELANRLMHPSSVIDREYLVRIQGQVDDDMLDRLRKGVTLEDGEARFTDIVEGAGEGQNQWYYCVVMEGRNREVRRLWESQGVRVSRLKRVRYGNIFIPSHVRVGQWIELAPKEISDLCATAGVKAPSKRVMKPAEK 258          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: A0A545TM66_9GAMM (Pseudouridine synthase n=1 Tax=Exilibacterium tricleocarpae TaxID=2591008 RepID=A0A545TM66_9GAMM)

HSP 1 Score: 276 bits (706), Expect = 9.990e-90
Identity = 140/248 (56.45%), Postives = 179/248 (72.18%), Query Frame = 1
Query:   19 ERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNASGEE 762
            E++ KVLARAG GSRRE+ER +E GRV++N + A  G RV   D VQLD GR + V+   Q   VL YNKP G +C+R D + RPT+++ LPR++ GRWI++GRLD NTSGLLLFTN GELA++LMHP   +DREY  R+ G+V+D+M QRLR+GV +E     F DIV+G G+G NRW+YCVV  GR REVRRLWESQGVKV+RL RVR+GNI +P+ +R GQ +EL     D LC   G+   G +
Sbjct:   12 EKLQKVLARAGLGSRREMERAIEDGRVKVNHKVARLGDRVTATDTVQLD-GRKVAVAPPQQRSRVLLYNKPEGEICSRADPEGRPTVYDRLPRLKTGRWISVGRLDFNTSGLLLFTNDGELANKLMHPSSVIDREYLVRVQGDVDDDMKQRLREGVLLEDGMARFTDIVDGAGEGRNRWFYCVVMEGRNREVRRLWESQGVKVNRLKRVRYGNIFVPSHVRVGQWIELDAQEVDELCQTAGVTGPGRQ 258          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: UPI001C2D712A (pseudouridine synthase n=1 Tax=Marinobacterium ramblicola TaxID=2849041 RepID=UPI001C2D712A)

HSP 1 Score: 276 bits (706), Expect = 1.630e-89
Identity = 135/236 (57.20%), Postives = 176/236 (74.58%), Query Frame = 1
Query:   19 ERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDAL 726
            E++ KVLAR+G+GSRRE+ER++E GR+ +NG  A+ G RV+ GD+V LD   +  +     A  VL YNKP G VCTRHD + RPT+F++LP +++GRWI IGRLDINT+GLLLFT  GELA+R+MHP   +DREYA R+ GEV DEML+RL+ GV +E    HF D+   +G+GAN+WY+CVV  GR REVRRLWESQG++V+RL RVRFG + LP+D++ G   ELGG   D L
Sbjct:    4 EKLQKVLARSGFGSRREMERFIEEGRIGLNGDLAKLGDRVKEGDQVSLDGRPIQLIFSAESARRVLIYNKPIGEVCTRHDPEGRPTVFDNLPPLKQGRWIVIGRLDINTTGLLLFTTDGELANRMMHPSANIDREYAVRVLGEVSDEMLERLKQGVLLEDGMAHFSDVRYFDGEGANKWYHCVVMEGRNREVRRLWESQGLQVNRLKRVRFGPVFLPSDVKVGTWRELGGKEIDLL 239          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: UPI001A8EFE64 (23S rRNA pseudouridine(2605) synthase RluB n=1 Tax=Motiliproteus sp. SC1-56 TaxID=2799565 RepID=UPI001A8EFE64)

HSP 1 Score: 275 bits (703), Expect = 1.860e-89
Identity = 135/242 (55.79%), Postives = 175/242 (72.31%), Query Frame = 1
Query:   19 ERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGL 744
            E++HKVLARAG GSRRE+ERW+E+GRV++NG RA  G RV P D +++D  RV   +   +   V+ YNKP G VCTRHD + RPT+FE LP+++ GRWI++GRLDINTSGLLLFT  GELA++LMHP   +DREYA R+ GEV DE LQ+L++GV +E     F D+   +G G+N WY+ V+  G+ REVRRLWESQGV+VSRL RVR+G I +P  +  GQ +EL     + LC L GL
Sbjct:    4 EKLHKVLARAGLGSRREMERWIESGRVQVNGERASLGDRVTPADVIKVDGQRVSLGAEAGKGCRVIVYNKPVGEVCTRHDPEGRPTVFEKLPKLKSGRWISVGRLDINTSGLLLFTTDGELANKLMHPSTGIDREYAVRVHGEVSDETLQKLKEGVFLEDGMARFTDVQLFDGTGSNVWYHVVLMEGKNREVRRLWESQGVEVSRLKRVRYGCIFMPKSIASGQWLELSQKELNDLCDLAGL 245          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: A0A1G8UX40_9GAMM (Pseudouridine synthase n=3 Tax=Microbulbifer TaxID=48073 RepID=A0A1G8UX40_9GAMM)

HSP 1 Score: 275 bits (702), Expect = 4.450e-89
Identity = 140/248 (56.45%), Postives = 176/248 (70.97%), Query Frame = 1
Query:   16 GERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNASGE 759
            GE++ KVLARAG GSRRE+ER +EAGRV +NG  A+ G RV   D ++LD  R+       +   V+ YNKP G +C+RHD + RPT+++ LPR+  GRWI++GRLD NTSGLLLFTN GELAHRLMHP   +DREY  RI G+V+DEM QRL  GV ++     F DIVE  G+G NRW+YCVV  GR REVRRLWESQGV+VSRL RVR+GN+ +P+ +R GQ +E+  A  D LC   GL   G+
Sbjct:    9 GEKLQKVLARAGLGSRREMERAIEAGRVTVNGTVAKLGERVTEDDLIELDGKRLQMPE--EERCRVILYNKPVGEICSRHDPEGRPTVYDRLPRLRTGRWISVGRLDFNTSGLLLFTNSGELAHRLMHPSSVIDREYLVRIQGQVDDEMKQRLLTGVLLDDGVARFTDIVESGGEGNNRWFYCVVMEGRNREVRRLWESQGVRVSRLKRVRYGNVFIPSQVRVGQWIEMEPADIDDLCETAGLPKLGQ 254          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: A0A6G8DB73_9GAMM (Pseudouridine synthase n=2 Tax=Microbulbifer TaxID=48073 RepID=A0A6G8DB73_9GAMM)

HSP 1 Score: 275 bits (704), Expect = 1.170e-88
Identity = 140/248 (56.45%), Postives = 176/248 (70.97%), Query Frame = 1
Query:   16 GERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNASGE 759
            GE++ KVLARAG GSRRE+ER +EAGRV +NG  A  G RV   DRV+ D  RV    G    L V+ YNKP G +C+RHD + RPT+++ LPR+  GRWI++GRLD NTSGLLLFTN GELA++LMHP   +DREY  RI G+V+DEM +RL  GV +E     F DIVE  G+G+NRW+YCVV  GR REVRRLWESQGV+VSRL RVR+G++ +P+ +R GQ +E+     D LC   GL   G+
Sbjct:    9 GEKLQKVLARAGLGSRREMERAIEAGRVTVNGEVAGLGERVTDDDRVEFDGKRVA--DGDENRLRVILYNKPIGEICSRHDPEGRPTVYDRLPRLGSGRWISVGRLDFNTSGLLLFTNSGELANKLMHPSSVIDREYLVRIQGQVDDEMKKRLVKGVQLEDGEARFTDIVESGGEGSNRWFYCVVMEGRNREVRRLWESQGVRVSRLKRVRYGSVFIPSHVRVGQWIEMEPKEIDDLCITAGLPKLGQ 254          
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Match: A0A1Q2M615_9GAMM (Pseudouridine synthase n=5 Tax=Microbulbifer TaxID=48073 RepID=A0A1Q2M615_9GAMM)

HSP 1 Score: 273 bits (699), Expect = 1.230e-88
Identity = 136/249 (54.62%), Postives = 179/249 (71.89%), Query Frame = 1
Query:   16 GERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGDRVQLDDGRVLRVSGGSQ-ALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRIERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEVEDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRRLWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNASGE 759
            GE++ KVLARAG GSRRE+ER +EAGRV +NG  A  G RV   D+++ D     R+SGG +  + V+ YNKP G +C+RHD + RPT+++ LPR++ GRWI++GRLD NTSGLLLFTN GELA++LMHP   +DREY  RI G+V+D+M +RL  GV ++     F DIVE  G+G NRW+YCVV  GR REVRRLWESQGV+VSRL RVR+G++ +P+ +R GQ +E+     D LC   GL   G+
Sbjct:    9 GEKLQKVLARAGMGSRREMERAIEAGRVTVNGEVAGLGERVSEDDQIEFDG---KRISGGDENRVRVILYNKPTGEICSRHDPEGRPTVYDRLPRLKSGRWISVGRLDFNTSGLLLFTNSGELANKLMHPSSVIDREYLVRIQGDVDDDMKKRLTKGVSLDDGEARFTDIVESGGEGTNRWFYCVVMEGRNREVRRLWESQGVRVSRLKRVRYGSVFIPSHVRVGQWIEMEPKEIDDLCVTAGLPKLGQ 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20580.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9ULH9_9GAMM2.920e-10760.89Pseudouridine synthase n=2 Tax=Gammaproteobacteria... [more]
A0A3D5DFC2_9GAMM1.350e-9961.98Pseudouridine synthase n=1 Tax=Gammaproteobacteria... [more]
A0A523P2I7_9PROT9.140e-9357.96Pseudouridine synthase n=1 Tax=Proteobacteria bact... [more]
UPI001E56E81D6.740e-9054.51pseudouridine synthase n=1 Tax=Marinibactrum halim... [more]
A0A545TM66_9GAMM9.990e-9056.45Pseudouridine synthase n=1 Tax=Exilibacterium tric... [more]
UPI001C2D712A1.630e-8957.20pseudouridine synthase n=1 Tax=Marinobacterium ram... [more]
UPI001A8EFE641.860e-8955.7923S rRNA pseudouridine(2605) synthase RluB n=1 Tax... [more]
A0A1G8UX40_9GAMM4.450e-8956.45Pseudouridine synthase n=3 Tax=Microbulbifer TaxID... [more]
A0A6G8DB73_9GAMM1.170e-8856.45Pseudouridine synthase n=2 Tax=Microbulbifer TaxID... [more]
A0A1Q2M615_9GAMM1.230e-8854.62Pseudouridine synthase n=5 Tax=Microbulbifer TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20580contigP-wetherbeei_contig20580:302..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1453501.JELR01000001_gene1918
Preferred namerluB
PFAMsPseudoU_synth_2,S4
Model size789
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K06178
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Exons1
Evalue1.63e-88
EggNOG OGsCOG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,1RQU0@1236|Gammaproteobacteria,463YU@72275|Alteromonadaceae
EC5.4.99.22
DescriptionBelongs to the pseudouridine synthase RsuA family
Cds size789
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.401284-CDS-P-wetherbeei_contig20580:301..10901683186203.401284-CDS-P-wetherbeei_contig20580:301..1090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20580 302..1090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20580.1.1prot_P-wetherbeei_contig20580.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20580 302..1090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20580.1.1

>prot_P-wetherbeei_contig20580.1.1 ID=prot_P-wetherbeei_contig20580.1.1|Name=mRNA_P-wetherbeei_contig20580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
MPDAGGERIHKVLARAGWGSRREIERWVEAGRVRINGRRAETGARVEPGD
RVQLDDGRVLRVSGGSQALHVLAYNKPAGVVCTRHDEQKRPTIFEDLPRI
ERGRWINIGRLDINTSGLLLFTNHGELAHRLMHPRYRVDREYAARIFGEV
EDEMLQRLRDGVDIEGERFHFDDIVEGEGDGANRWYYCVVQSGRQREVRR
LWESQGVKVSRLIRVRFGNIMLPADLRGGQTVELGGALRDALCALVGLNA
SGEELRSAAPRT*
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mRNA from alignment at P-wetherbeei_contig20580:302..1090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20580.1.1 ID=mRNA_P-wetherbeei_contig20580.1.1|Name=mRNA_P-wetherbeei_contig20580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig20580:302..1090+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGATGCCGGCGGCGAACGCATACACAAGGTGCTGGCCCGCGCGGG CTGGGGCTCGCGCCGCGAAATCGAGCGCTGGGTCGAAGCGGGTCGCGTCC GCATCAATGGTCGCCGCGCCGAGACTGGCGCGCGGGTAGAGCCGGGTGAT CGTGTGCAATTGGACGATGGTCGCGTGCTGCGTGTCAGCGGCGGCAGTCA GGCCCTGCACGTGCTCGCCTATAACAAACCGGCCGGCGTGGTCTGCACCC GCCACGATGAGCAGAAGCGCCCGACCATCTTTGAAGACCTGCCGCGTATA GAACGCGGCCGCTGGATCAACATCGGACGCCTGGACATCAATACCAGCGG TCTATTGTTGTTCACCAATCATGGTGAATTGGCCCATCGACTCATGCATC CACGTTACCGTGTCGACCGTGAATATGCCGCACGCATCTTCGGCGAGGTC GAAGACGAAATGCTGCAGCGACTGCGCGATGGCGTCGACATCGAGGGCGA GCGCTTTCACTTCGATGACATCGTCGAAGGCGAGGGCGATGGCGCCAATC GCTGGTATTACTGCGTGGTCCAGAGCGGCCGGCAGCGTGAGGTGCGGCGT TTGTGGGAGTCGCAGGGCGTCAAGGTCAGCCGCCTGATCCGTGTGCGCTT CGGCAACATCATGCTGCCGGCCGATCTGCGCGGTGGCCAGACTGTCGAAC TCGGCGGCGCGCTGCGCGATGCGCTGTGCGCACTGGTCGGTCTCAACGCC AGTGGCGAAGAACTGCGCAGCGCCGCGCCCAGAACCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20580:302..1090+

>mRNA_P-wetherbeei_contig20580.1.1 ID=mRNA_P-wetherbeei_contig20580.1.1|Name=mRNA_P-wetherbeei_contig20580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig20580:302..1090+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGATGCCGGCGGCGAACGCATACACAAGGTGCTGGCCCGCGCGGG
CTGGGGCTCGCGCCGCGAAATCGAGCGCTGGGTCGAAGCGGGTCGCGTCC
GCATCAATGGTCGCCGCGCCGAGACTGGCGCGCGGGTAGAGCCGGGTGAT
CGTGTGCAATTGGACGATGGTCGCGTGCTGCGTGTCAGCGGCGGCAGTCA
GGCCCTGCACGTGCTCGCCTATAACAAACCGGCCGGCGTGGTCTGCACCC
GCCACGATGAGCAGAAGCGCCCGACCATCTTTGAAGACCTGCCGCGTATA
GAACGCGGCCGCTGGATCAACATCGGACGCCTGGACATCAATACCAGCGG
TCTATTGTTGTTCACCAATCATGGTGAATTGGCCCATCGACTCATGCATC
CACGTTACCGTGTCGACCGTGAATATGCCGCACGCATCTTCGGCGAGGTC
GAAGACGAAATGCTGCAGCGACTGCGCGATGGCGTCGACATCGAGGGCGA
GCGCTTTCACTTCGATGACATCGTCGAAGGCGAGGGCGATGGCGCCAATC
GCTGGTATTACTGCGTGGTCCAGAGCGGCCGGCAGCGTGAGGTGCGGCGT
TTGTGGGAGTCGCAGGGCGTCAAGGTCAGCCGCCTGATCCGTGTGCGCTT
CGGCAACATCATGCTGCCGGCCGATCTGCGCGGTGGCCAGACTGTCGAAC
TCGGCGGCGCGCTGCGCGATGCGCTGTGCGCACTGGTCGGTCTCAACGCC
AGTGGCGAAGAACTGCGCAGCGCCGCGCCCAGAACCTGA
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