mRNA_P-wetherbeei_contig20575.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20575.1.1
Unique NamemRNA_P-wetherbeei_contig20575.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A7X9KMI5_9ACTN (Uroporphyrinogen-III synthase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KMI5_9ACTN)

HSP 1 Score: 241 bits (615), Expect = 6.900e-77
Identity = 144/241 (59.75%), Postives = 173/241 (71.78%), Query Frame = 1
Query:   13 LAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQLAASDLRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALSRCD----LVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMALVRHLA 723
            LAGRRVVVTR  EQA+ L  LL+  GA PV+VPLIE++  P   A+LAA     F+W+VV+SPN A +    H +A    PP +AA+G+ATA AL+       LVP  Q A GLLA  P     GSGS+L+VQ+A A P L  GLAA GW+VT   P R+VPA ++AGQQLAALAADAVLFASGSAARAWV+V G TTPP+VVA+GPQT A +E AGLKV++VAADHSL GLV AL RHL+
Sbjct:    4 LAGRRVVVTRAAEQADELVTLLQAAGAVPVVVPLIEIVADPTATAELAALGPTRFEWLVVSSPNGAAQYVAAHGSAA---PPSVAAIGSATAHALAVAGIVAGLVPAQQNATGLLAEFP----SGSGSLLLVQAAAAEPELAAGLAARGWQVTTISPYRSVPARVTAGQQLAALAADAVLFASGSAARAWVAVFGHTTPPVVVAIGPQTAAAIERAGLKVAIVAADHSLPGLVAALQRHLS 237          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A3C2B370_9ACTN (Uroporphyrinogen-III synthase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B370_9ACTN)

HSP 1 Score: 207 bits (527), Expect = 7.470e-64
Identity = 128/223 (57.40%), Postives = 154/223 (69.06%), Query Frame = 1
Query:   67 AELLREQGAEPVIVPLIEVIDVPAGMAQLAASDLRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALSR----CDLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMALVRHLA 723
            A+LLR++GA PV++PLI++  +P   A LAA     FDW+VV+SPN AE    +H AA  +   R+AAVG  TA  L        LVP TQ A GLLA MPP P       L+VQ+ +A PTL  GLAAAG  VT   P R+VPA  +AGQQLAAL+ADAVLFASGSAARAW +V G +TPP+VVA+GPQT A  +AAGLKV+LVAADHSL GLV AL R L+
Sbjct:    1 ADLLRDRGAVPVVMPLIDIEPIPPQAAALAALHPADFDWLVVSSPNGAEAYRAVHRAAAAQ---RVAAVGRVTARTLQEGGVEVALVPATQSAEGLLAEMPPGP----ARTLLVQAVDAEPTLAHGLAAAGHTVTGVTPYRSVPARPTAGQQLAALSADAVLFASGSAARAWAAVFGDSTPPVVVAIGPQTAAAAQAAGLKVTLVAADHSLPGLVSALERSLS 216          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A7K1B6L6_9ACTN (Uroporphyrinogen-III synthase n=2 Tax=root TaxID=1 RepID=A0A7K1B6L6_9ACTN)

HSP 1 Score: 205 bits (522), Expect = 9.060e-63
Identity = 124/234 (52.99%), Postives = 153/234 (65.38%), Query Frame = 1
Query:   10 PLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQLAASD-LRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALSRCDLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMAL 708
            PL G  VV+TRP EQA+ LA+LL E+GA PV++PLIE++DV       AA D L   DWVVV S + A RV       L     ++AAVG+ TA +L R DLV E Q A GL+A  P A PDG G  +V Q+ + APTLVDGL A GW V      R+ P   +AGQQLA L ADAV+F SG+ A +WV++ GTTTPP+VV +GPQT  + E AGLKV+  AADHSL GL+ AL
Sbjct:    8 PLEGHTVVITRPREQAQVLADLLSERGAIPVVMPLIELVDVATPDTIHAALDPLGEDDWVVVASAHAASRVA----GPLATCAAKVAAVGSTTARSLPRTDLVAERQSAEGLVAVFPAAVPDGGGRAVVAQAVDGAPTLVDGLRALGWSVARVDTHRSRPVEPTAGQQLALLKADAVVFTSGTQAESWVNLFGTTTPPVVVTIGPQTTRNTEVAGLKVTATAADHSLPGLIRAL 237          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A6I3F0R6_9ACTN (Uroporphyrinogen-III synthase n=2 Tax=root TaxID=1 RepID=A0A6I3F0R6_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 2.720e-58
Identity = 121/239 (50.63%), Postives = 147/239 (61.51%), Query Frame = 1
Query:   13 LAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQLAASDLRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALSRCD----LVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMALVRH 717
            L GRRV VTR  EQA +L ELL   GA P++VPL E++   +G+A+L A D   FDW+VVTSPN A+    +H +A    P R+AAVG  TAAAL        LVP  QRA GL+   P     G G VL+VQ+A+    L DGLAA GW+VT  +P R+ PA+ +   + AALAADAVLFASGSAARAWV+ +GT TPP                 LKVS VA DHSL GLV AL R+
Sbjct:    4 LQGRRVAVTRAAEQAGALVELLVAHGAVPIVVPLTEIVPDASGVAELTALDPAAFDWLVVTSPNAADAYNTVHQSA----PARVAAVGAVTAAALEAVGVAVTLVPTRQRAEGLVEEFP----SGPGWVLLVQAADGESVLADGLAAKGWKVTVVRPYRSAPASTTTADRAAALAADAVLFASGSAARAWVAAIGTDTPPXXXXXXXXXXXXXXXXXLKVSAVATDHSLPGLVEALCRY 234          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A6J7CGY1_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7CGY1_9ZZZZ)

HSP 1 Score: 182 bits (462), Expect = 1.460e-53
Identity = 117/249 (46.99%), Postives = 154/249 (61.85%), Query Frame = 1
Query:    4 SLPLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQL--AASDLRTFDWVVVTSPNVAERVE----RLHPAALGEIP---PRIAAVGTATAAALS-RCDLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQ----LAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMAL 708
            S PLAGRRVV+TR  +Q+  L + +   GAE ++VPLI +++     A L  A   L  FDW+VVTSPN A RV     RL  +  G+     PR+AAVG  TA AL  R DLVP+ Q A GL+A  P    +G+G+VL+ Q+ +A   + DGL + GW+V      R +P    A ++    L+ L+ADAVLFASGSAARAWV V G +TPP+V+A+GP T    E  GLK++ +AADHSL GLV  L
Sbjct:    3 SPPLAGRRVVITRAADQSHELVQQIAALGAEAIVVPLIAIVEPSDAGAALHHALEHLAEFDWLVVTSPNGAARVAGAVARLEASTSGQAQRRMPRLAAVGRTTAEALPLRADLVPQRQFAAGLVAEFP----EGTGTVLIAQAEQAGHEVADGLRSKGWQVEVVAAYRTIPQVPPAAERSAVLLSVLSADAVLFASGSAARAWVDVFGPSTPPVVIAIGPATAQAAEELGLKITAIAADHSLDGLVACL 247          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A6I3WPI2_9ACTN (Uroporphyrinogen-III synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3WPI2_9ACTN)

HSP 1 Score: 182 bits (462), Expect = 1.770e-52
Identity = 117/249 (46.99%), Postives = 154/249 (61.85%), Query Frame = 1
Query:    4 SLPLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQL--AASDLRTFDWVVVTSPNVAERVE----RLHPAALGEIP---PRIAAVGTATAAALS-RCDLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQ----LAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMAL 708
            S PLAGRRVV+TR  +Q+  L + +   GAE ++VPLI +++     A L  A   L  FDW+VVTSPN A RV     RL  +  G+     PR+AAVG  TA AL  R DLVP+ Q A GL+A  P    +G+G+VL+ Q+ +A   + DGL + GW+V      R +P    A ++    L+ L+ADAVLFASGSAARAWV V G +TPP+V+A+GP T    E  GLK++ +AADHSL GLV  L
Sbjct:   93 SPPLAGRRVVITRAADQSHELVQQIAALGAEAIVVPLIAIVEPSDAGAALHHALEHLAEFDWLVVTSPNGAARVAGAVARLEASTSGQAQRRMPRLAAVGRTTAEALPLRADLVPQRQFAAGLVAEFP----EGTGTVLIAQAEQAGHEVADGLRSKGWQVEVVAAYRTIPQVPPAAERSAVLLSVLSADAVLFASGSAARAWVDVFGPSTPPVVIAIGPATAQAAEELGLKITAIAADHSLDGLVACL 337          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A539E419_9ACTN (Uroporphyrinogen-III synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E419_9ACTN)

HSP 1 Score: 170 bits (431), Expect = 1.570e-49
Identity = 108/209 (51.67%), Postives = 132/209 (63.16%), Query Frame = 1
Query:    1 VSLPLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDV-PAGMAQLAASDLRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALSRCDLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQ 624
            V LPLAG  VVVTRP++QA +LA +L E GA  +++PLIE++DV  +   + A + L   DWVVV S   A RV     AAL   P ++AAVG ATAAAL R DLV E Q A GL+A  P     G+G  +VVQ+A+ APTLV GLA  GW V      R+V    +AGQQLA L ADAV+F SGS A AWV V G   PP+VV +G Q
Sbjct:    5 VRLPLAGLTVVVTRPLDQAGALAAMLEEAGATAIVMPLIELVDVVDSTQIEEAVTPLDVADWVVVASAQAARRVG----AALERSPAQVAAVGAATAAALPRADLVAERQSAEGLVAQFPA----GTGRAVVVQAADGAPTLVHGLAQLGWHVRRLDSHRSVAVVPTAGQQLAVLKADAVVFTSGSQAEAWVRVFGEAAPPLVVTIGTQ 205          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A5Q2RIY4_9ACTN (Uroporphyrinogen-III synthase n=2 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RIY4_9ACTN)

HSP 1 Score: 163 bits (413), Expect = 3.760e-46
Identity = 110/248 (44.35%), Postives = 143/248 (57.66%), Query Frame = 1
Query:   10 PLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQL--AASDLRTFDWVVVTSPNVAERV-ERLHPAALGEIPPRIAAVGTATAAALSR----CDLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGT-TTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMALVRHLAPL 729
            PLAGR VVVTR   QA +L + L   GA  V VP+I + D   G   L  A  DL ++DW+VVTS N A+RV +RL P+ L  +  R+AA+G  T  AL+R     DLVPE   A GLLAA PP PP G G VL+ Q+A A P L +GL AAGW V A +  R V   L       A  ADA+ F S S  R +V+  G    P +V ++GP T A     G++V++ A +H++ GL  ALV+H+  L
Sbjct:    9 PLAGRTVVVTRATTQASTLVDALTAHGARIVAVPVIAIADASDGGTALHGALDDLSSYDWLVVTSANGADRVADRLDPSRLETVATRVAAIGPGTVDALARHGIAVDLVPERFVAEGLLAAFPPVPP-GGGRVLLAQAAAARPVLREGLVAAGWTVDAVEAYRTVHPVLDPDLVARAARADAITFTSASTVRGYVAAAGPDAVPQVVASIGPITSAAARELGIRVAVEAEEHTIDGLAAALVQHIRSL 255          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A6N2DMJ9_9ACTN (Uroporphyrinogen-III synthase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DMJ9_9ACTN)

HSP 1 Score: 155 bits (392), Expect = 3.630e-42
Identity = 118/248 (47.58%), Postives = 140/248 (56.45%), Query Frame = 1
Query:    1 VSLPLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQLAAS--DLRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALSRC-----DLVPETQRAVGLLAAMPPAPPDGSG---SVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMALVR 714
            ++ PL GRRVV TR V     L + LRE GAE V VPLIE++D P G A LAA+   +  FDWVVVTS + AERV    PA +     R AAVGTATA  LSR      DLVP  QRA  L+ A      + +G   S+LV Q+  A PTLV+GL  +G RV                Q LAAL AD V FASGSAA AW   +GT TPP V  +GP T A   A GL VS  A++HS+ GL   +V 
Sbjct:   90 MNAPLVGRRVVTTREVPGR--LDQRLRELGAEVVHVPLIEIVDPPDGGAALAAALAAIDRFDWVVVTSRHGAERVGAAVPAGI-----RTAAVGTATADVLSRLTGRPVDLVPSVQRAAALVHAFAECS-EAAGDPWSILVAQADRAEPTLVEGLRRSGHRVEVVTAYSTRLRTPDPDQLLAALDADVVAFASGSAAEAWARAIGTRTPPAVCVIGPTTAAAARAHGLPVSAEASEHSVEGLARCVVE 329          
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Match: A0A848UHZ0_9ACTN (Uroporphyrinogen-III synthase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UHZ0_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 5.610e-40
Identity = 111/243 (45.68%), Postives = 139/243 (57.20%), Query Frame = 1
Query:   10 PLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQLAASDLRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALSRC-----DLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGWRVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPPIVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMALVRHLA 723
            PLA RRVV TR  +    L   L   GA+ V VPLIE++    G       DL  FDWVVVTS + A  V R   AA      R+AAVG+ TAA L+       ++VP  Q A  L+ AMPP P     +VLV Q+  A PTLVDGL   G+ V +    R V    +A ++ AAL ADAV FASGSAA  WV  +G  +P IVVA+GP T A   AAGL+++ VAADHS+ GLV  ++  L+
Sbjct:    5 PLAHRRVVTTR--DHRGRLDSQLASAGADVVHVPLIEIVPALGG----DDLDLSPFDWVVVTSRHGASAVGR---AAANAPRVRLAAVGSRTAARLAELAGRSVEVVPNRQTAADLVEAMPPGP----AAVLVAQADRADPTLVDGLQRRGYAVESVTAYRTVTRTPTAEERHAALHADAVTFASGSAAEGWVEAIGQRSPSIVVAIGPVTAAVASAAGLQITHVAADHSIEGLVDTVITALS 234          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20575.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KMI5_9ACTN6.900e-7759.75Uroporphyrinogen-III synthase n=2 Tax=Actinobacter... [more]
A0A3C2B370_9ACTN7.470e-6457.40Uroporphyrinogen-III synthase (Fragment) n=1 Tax=A... [more]
A0A7K1B6L6_9ACTN9.060e-6352.99Uroporphyrinogen-III synthase n=2 Tax=root TaxID=1... [more]
A0A6I3F0R6_9ACTN2.720e-5850.63Uroporphyrinogen-III synthase n=2 Tax=root TaxID=1... [more]
A0A6J7CGY1_9ZZZZ1.460e-5346.99Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A6I3WPI2_9ACTN1.770e-5246.99Uroporphyrinogen-III synthase n=1 Tax=Actinomyceti... [more]
A0A539E419_9ACTN1.570e-4951.67Uroporphyrinogen-III synthase n=1 Tax=Acidimicrobi... [more]
A0A5Q2RIY4_9ACTN3.760e-4644.35Uroporphyrinogen-III synthase n=2 Tax=Actinomarini... [more]
A0A6N2DMJ9_9ACTN3.630e-4247.58Uroporphyrinogen-III synthase n=1 Tax=Ilumatobacte... [more]
A0A848UHZ0_9ACTN5.610e-4045.68Uroporphyrinogen-III synthase n=1 Tax=Ilumatobacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20575contigP-wetherbeei_contig20575:145..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_37830
Preferred namehemD
PFAMsHEM4,HemX
Model size735
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC00871,RC01861,RC02317
KEGG koko:K01719,ko:K01749,ko:K02496,ko:K13542,ko:K13543
KEGG ReactionR00084,R03165,R03194
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004852,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue5.66e-32
EggNOG OGsCOG1587@1|root,COG1587@2|Bacteria
EC2.1.1.107,2.5.1.61,4.2.1.75
Descriptionuroporphyrinogen-III synthase activity
Cds size735
COG categoryH
BiGG ReactioniJN746.PP_0187,iSBO_1134.SBO_3815
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.1524317-CDS-P-wetherbeei_contig20575:144..8791683186203.1524317-CDS-P-wetherbeei_contig20575:144..879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20575 145..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20575.1.1prot_P-wetherbeei_contig20575.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20575 145..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20575.1.1

>prot_P-wetherbeei_contig20575.1.1 ID=prot_P-wetherbeei_contig20575.1.1|Name=mRNA_P-wetherbeei_contig20575.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
VSLPLAGRRVVVTRPVEQAESLAELLREQGAEPVIVPLIEVIDVPAGMAQ
LAASDLRTFDWVVVTSPNVAERVERLHPAALGEIPPRIAAVGTATAAALS
RCDLVPETQRAVGLLAAMPPAPPDGSGSVLVVQSAEAAPTLVDGLAAAGW
RVTACQPVRAVPAALSAGQQLAALAADAVLFASGSAARAWVSVLGTTTPP
IVVALGPQTGADVEAAGLKVSLVAADHSLAGLVMALVRHLAPLG*
back to top

mRNA from alignment at P-wetherbeei_contig20575:145..879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20575.1.1 ID=mRNA_P-wetherbeei_contig20575.1.1|Name=mRNA_P-wetherbeei_contig20575.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig20575:145..879- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCCTGCCGCTCGCCGGTCGGCGGGTGGTCGTCACGCGCCCGGTGGA GCAGGCCGAGTCGCTGGCCGAGCTGCTACGCGAGCAGGGCGCCGAACCGG TGATCGTGCCGTTGATCGAGGTGATCGACGTGCCCGCCGGGATGGCCCAG CTCGCGGCCTCGGACCTGCGCACCTTCGACTGGGTGGTCGTCACCTCACC GAACGTGGCCGAGCGTGTGGAGCGCCTCCATCCGGCCGCGCTGGGTGAGA TCCCGCCGCGGATCGCGGCGGTCGGCACGGCCACTGCTGCGGCCCTGTCG AGATGCGATCTGGTGCCCGAAACGCAACGCGCGGTCGGTTTGCTGGCGGC GATGCCGCCGGCGCCGCCGGACGGATCGGGCTCGGTGCTCGTCGTGCAAT CCGCCGAGGCGGCCCCGACCCTCGTCGACGGGCTGGCCGCGGCGGGCTGG CGCGTCACCGCCTGCCAGCCGGTTCGCGCCGTTCCTGCGGCTCTTTCCGC AGGTCAGCAGCTGGCTGCGCTTGCCGCCGATGCGGTGCTGTTCGCGAGCG GATCGGCGGCACGGGCGTGGGTGAGCGTGCTCGGCACGACCACACCACCG ATCGTGGTGGCACTGGGCCCCCAAACGGGGGCGGATGTGGAGGCTGCGGG CCTCAAGGTTTCCCTGGTCGCGGCCGATCATTCACTCGCTGGCCTGGTGA TGGCACTCGTCCGTCATCTCGCTCCGCTTGGGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20575:145..879-

>mRNA_P-wetherbeei_contig20575.1.1 ID=mRNA_P-wetherbeei_contig20575.1.1|Name=mRNA_P-wetherbeei_contig20575.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig20575:145..879- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCCTGCCGCTCGCCGGTCGGCGGGTGGTCGTCACGCGCCCGGTGGA
GCAGGCCGAGTCGCTGGCCGAGCTGCTACGCGAGCAGGGCGCCGAACCGG
TGATCGTGCCGTTGATCGAGGTGATCGACGTGCCCGCCGGGATGGCCCAG
CTCGCGGCCTCGGACCTGCGCACCTTCGACTGGGTGGTCGTCACCTCACC
GAACGTGGCCGAGCGTGTGGAGCGCCTCCATCCGGCCGCGCTGGGTGAGA
TCCCGCCGCGGATCGCGGCGGTCGGCACGGCCACTGCTGCGGCCCTGTCG
AGATGCGATCTGGTGCCCGAAACGCAACGCGCGGTCGGTTTGCTGGCGGC
GATGCCGCCGGCGCCGCCGGACGGATCGGGCTCGGTGCTCGTCGTGCAAT
CCGCCGAGGCGGCCCCGACCCTCGTCGACGGGCTGGCCGCGGCGGGCTGG
CGCGTCACCGCCTGCCAGCCGGTTCGCGCCGTTCCTGCGGCTCTTTCCGC
AGGTCAGCAGCTGGCTGCGCTTGCCGCCGATGCGGTGCTGTTCGCGAGCG
GATCGGCGGCACGGGCGTGGGTGAGCGTGCTCGGCACGACCACACCACCG
ATCGTGGTGGCACTGGGCCCCCAAACGGGGGCGGATGTGGAGGCTGCGGG
CCTCAAGGTTTCCCTGGTCGCGGCCGATCATTCACTCGCTGGCCTGGTGA
TGGCACTCGTCCGTCATCTCGCTCCGCTTGGGTAG
back to top