mRNA_P-wetherbeei_contig20568.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20568.1.1
Unique NamemRNA_P-wetherbeei_contig20568.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.510e-46
Identity = 79/107 (73.83%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 KKVLRRAKRMREEEDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKG 321
            KK L+ A+++R+ +D+  +QL EM DRLPPLSRFTTGWKLDEWQKRVLR+VD++ SAIVCAPTSSGKT+ISTYVT  +G+ G+ILFVVPTEPLVWQVAALF+KLL+G
Sbjct:  261 KKTLKAARKLRDSQDMTEYQLVEMHDRLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRG 367
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A836CAV0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV0_9STRA)

HSP 1 Score: 167 bits (422), Expect = 9.640e-46
Identity = 83/108 (76.85%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:    1 KKVLRRAKRMREEEDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKGA 324
            KKV+++  ++REEED+VVFQLTEMADRLPPLSRF+TGWKLD+WQKRVL  VD+ +SAIVCAPTSSGKTVIS+YV   S +  R+LFVVPTEPLVWQVAALFHKLLKG+
Sbjct:  193 KKVIKKVLKLREEEDMVVFQLTEMADRLPPLSRFSTGWKLDDWQKRVLAVVDRHQSAIVCAPTSSGKTVISSYVASDSAAS-RVLFVVPTEPLVWQVAALFHKLLKGS 299
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A7S4A060_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A060_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.640e-36
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 KKVLRRAKRMREEEDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKGA 324
            +K +R AK++R+E +L  FQL  M DRLPPLSRF  GW+LD WQK+VLR +D  +SA+VCAPTSSGKTVISTY      +  R+LFVVPTEPLVWQVAA+F KLL+G+
Sbjct:  191 RKEVRAAKKLRKELELAEFQLARMHDRLPPLSRFLKGWRLDAWQKKVLRHIDNGKSAVVCAPTSSGKTVISTYTCV---ANERVLFVVPTEPLVWQVAAMFEKLLQGS 295
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A7S1UIK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIK5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.900e-36
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    1 KKVLRRAKRMREEE--DLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKG 321
            +K ++ AK+ R+ E   L  FQL  MADRLPP+S F+ GW+LD WQKRVL  +DQ +SAIVCAPTSSGKTV+STY    + +EGR++F VP+EPLVWQVA++F+K+  G
Sbjct:   37 RKHVKAAKKWRKSEAASLAAFQLNHMADRLPPISPFSKGWRLDGWQKRVLTLIDQHQSAIVCAPTSSGKTVVSTYA---ATAEGRVMFCVPSEPLVWQVASMFNKVCGG 142
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A4D9CYE4_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYE4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 8.560e-33
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:   40 EDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKG 321
            ED++ FQL +MA+RLPPLSRFT G  LD WQKRVL  +D+RRS IVCAPTSSGKT++S+YVT       +ILFVVPTEPLVWQVAA+F+K+L G
Sbjct:  380 EDVIEFQLVKMANRLPPLSRFTFGRSLDAWQKRVLGLIDERRSVIVCAPTSSGKTILSSYVTM---RADKILFVVPTEPLVWQVAAMFYKVLGG 470
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: B8BT46_THAPS (Helicase ATP-binding domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT46_THAPS)

HSP 1 Score: 119 bits (297), Expect = 6.940e-29
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:   22 KRMREEEDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKG 321
            K M  ++D++ FQLTEMADRLPPLSR+   +KL++WQ  +L  +D+R+SA+VCAPTSSGKT++STY      +EG +LFV+P+E LVWQ+AA +++  KG
Sbjct:  311 KLMSGKKDIITFQLTEMADRLPPLSRYNRHFKLEDWQCDILGAIDERKSAVVCAPTSSGKTLLSTYTC--KQTEGTVLFVLPSEVLVWQIAATYYEFFKG 408
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A397E873_9STRA (Helicase ATP-binding domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E873_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.660e-28
Identity = 55/93 (59.14%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:   46 LVVFQLTEMADRLPPLS-RFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKG 321
            L+ FQLTEM+DRLPPL+      + LD+WQK VL  +DQ+ S +VCAPTSSGKTV+S+YV+ + G   ++LF+ PTEPLVWQVAALF  ++KG
Sbjct:  176 LIPFQLTEMSDRLPPLNLHHMNKFILDKWQKEVLTHIDQKHSVVVCAPTSSGKTVLSSYVSVIGG---KVLFLAPTEPLVWQVAALFQAMVKG 265
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A7S2P3Q6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3Q6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.060e-28
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   22 KRMREEEDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKG 321
            K M  ++DL+ FQLTEM DRLPPLSR+   ++L++WQ  VL  +D R SAIVCAPTSSGKT++STY      ++G +LFV+P+E LVWQVAA +++  KG
Sbjct:  310 KLMSSKKDLISFQLTEMHDRLPPLSRYNRKFRLEDWQCAVLESIDNRSSAIVCAPTSSGKTLLSTYTC--KSAKGTVLFVLPSEVLVWQVAATYYEFFKG 407
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A7S2YA93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YA93_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.430e-28
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:   22 KRMREEEDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKG 321
            K M+ +E L+ FQLT+M DRLPPLSR+   +KL++WQ  +L  +D+RRSA+VCAPTSSGKT++STY      + G +LFV+P+E LVWQVA+ +++  KG
Sbjct:  318 KLMKSKESLISFQLTDMPDRLPPLSRYNRKFKLEDWQCSILGAIDERRSAVVCAPTSSGKTLLSTYTC--KNAHGTVLFVLPSEVLVWQVASTYYQFFKG 415
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BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Match: A0A1V9ZWN9_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWN9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.520e-28
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   46 LVVFQLTEMADRLPPLS-RFTTGWKLDEWQKRVLREVDQRRSAIVCAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKGA 324
            L+ FQLTEM+DRLPPL+      + LD WQK VL  +D++ S IVCAPTSSGKTV+S+YVT V G   ++LF+ PTEPL WQVAALF  L+KGA
Sbjct:  170 LIPFQLTEMSDRLPPLNLHHMNKFILDSWQKEVLTHIDKKHSVIVCAPTSSGKTVLSSYVTVVGG---KVLFIAPTEPLAWQVAALFQSLVKGA 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20568.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI1.510e-4673.83Helicase ATP-binding domain-containing protein n=2... [more]
A0A836CAV0_9STRA9.640e-4676.85P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4A060_9STRA2.640e-3663.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UIK5_9STRA4.900e-3658.72Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9CYE4_9STRA8.560e-3368.09Helicase ATP-binding domain-containing protein n=2... [more]
B8BT46_THAPS6.940e-2955.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A397E873_9STRA1.660e-2859.14Helicase ATP-binding domain-containing protein n=6... [more]
A0A7S2P3Q6_9STRA2.060e-2856.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2YA93_9STRA4.430e-2854.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A1V9ZWN9_9STRA4.520e-2861.70DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20568contigP-wetherbeei_contig20568:311..871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZQ4
Preferred nameDDX60
PFAMsDEAD,Helicase_C
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K20103
Hectar predicted targeting categoryother localisation
GOsGO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0039531,GO:0039533,GO:0039535,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043902,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045111,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0080134,GO:0097159,GO:1900245,GO:1900246,GO:1901363,GO:1902531,GO:1902533
Exons2
Evalue1.79e-45
EggNOG OGsCOG4581@1|root,KOG0949@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size300
COG categoryL
BRITEko00000,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.019762-CDS-P-wetherbeei_contig20568:310..5281683186203.019762-CDS-P-wetherbeei_contig20568:310..528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20568 311..528 -
1683186203.037234-CDS-P-wetherbeei_contig20568:762..8441683186203.037234-CDS-P-wetherbeei_contig20568:762..844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20568 763..844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.0583808-UTR-P-wetherbeei_contig20568:844..8711683186203.0583808-UTR-P-wetherbeei_contig20568:844..871Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20568 845..871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20568.1.1prot_P-wetherbeei_contig20568.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20568 311..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20568.1.1

>prot_P-wetherbeei_contig20568.1.1 ID=prot_P-wetherbeei_contig20568.1.1|Name=mRNA_P-wetherbeei_contig20568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MREEEDLVVFQLTEMADRLPPLSRFTTGWKLDEWQKRVLREVDQRRSAIV
CAPTSSGKTVISTYVTYVSGSEGRILFVVPTEPLVWQVAALFHKLLKGA*
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mRNA from alignment at P-wetherbeei_contig20568:311..871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20568.1.1 ID=mRNA_P-wetherbeei_contig20568.1.1|Name=mRNA_P-wetherbeei_contig20568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig20568:311..871- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAGGTGCTTCGACGAGCAAAGCGGATGCGCGAGGAGGAGGACCTCGT
CGTGTTTCAGCTGACGGAGATGGCCGACCGCCTCCCGCCCCTCTCCCGCT
TCACCACCGGTGAGGTCGCGGGGTTCTCATATTTTCCCGTGATTTCTTTT
GAAGCTTTTCGCGTTCCGTGCGGACAGAAGTAAGTGTTCTTAGGTTGAAC
CCCTCTACTCCCCAAACCCTAAATCCTAACCCCTTTGATTCTAAAGGGCC
CGCCGCTGTCGTTCAAGGCTTCTTTCTGCCTTTTCGCCAACCGTGGAAGC
GTTAAGCCTTTTCAGTCCAAACATCCTTTAAACCTTCATATAGGGTGGAA
GCTGGACGAGTGGCAGAAGCGGGTGCTGCGCGAGGTCGACCAGCGGCGCT
CCGCCATCGTCTGCGCGCCGACCTCTTCCGGCAAGACAGTCATTTCGACG
TACGTCACGTACGTGTCGGGCTCCGAGGGGCGCATCCTCTTCGTGGTGCC
GACGGAGCCGCTCGTGTGGCAGGTTGCCGCGCTCTTCCACAAGCTGCTCA
AGGGTGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20568:311..871-

>mRNA_P-wetherbeei_contig20568.1.1 ID=mRNA_P-wetherbeei_contig20568.1.1|Name=mRNA_P-wetherbeei_contig20568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig20568:311..871- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGAGGAGGAGGACCTCGTCGTGTTTCAGCTGACGGAGATGGCCGA
CCGCCTCCCGCCCCTCTCCCGCTTCACCACCGGGTGGAAGCTGGACGAGT
GGCAGAAGCGGGTGCTGCGCGAGGTCGACCAGCGGCGCTCCGCCATCGTC
TGCGCGCCGACCTCTTCCGGCAAGACAGTCATTTCGACGTACGTCACGTA
CGTGTCGGGCTCCGAGGGGCGCATCCTCTTCGTGGTGCCGACGGAGCCGC
TCGTGTGGCAGGTTGCCGCGCTCTTCCACAAGCTGCTCAAGGGTGCGTGA
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