mRNA_P-wetherbeei_contig2054.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2054.2.1
Unique NamemRNA_P-wetherbeei_contig2054.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.770e-16
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   31 QGVLISCDVPTRQFILHLNKKRQ--FVLNELDETHLFVEASAVQEIR 165
            +GVLI+CDVPT+QFILHLN K+   F++N+LDETHLFVEASAV EIR
Sbjct:    9 KGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIR 55          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A167QQ08_PHYB8 (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167QQ08_PHYB8)

HSP 1 Score: 66.6 bits (161), Expect = 3.350e-13
Identity = 28/52 (53.85%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GVL+ CD   +Q +L+LNK+  FV+ +LDETHLF+EAS+V ++R+ L
Sbjct:    2 VKAVKGVLVECDSTVKQIVLNLNKRSNFVIEDLDETHLFIEASSVPQLRYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A8H7BNP7_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BNP7_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 6.580e-13
Identity = 27/52 (51.92%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GVL+ CD   +Q +L+LNK+  FV+ +LD+THLF+EAS+VQ++++ L
Sbjct:    2 VKAVKGVLLECDSTVKQIVLNLNKRSHFVIEDLDDTHLFIEASSVQQLQYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1C7NDR9_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=8 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7NDR9_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 3.900e-12
Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GVL+ CD   +Q +L+LNK+  F++ +LDETHLF+EAS V+++++ L
Sbjct:    2 VKAVKGVLLECDSTVKQIVLNLNKRGNFIIEDLDETHLFIEASWVEQLKYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A068SFM5_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SFM5_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 5.740e-12
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GVL+ CD   +Q +L+LN++  FV+ +LDETHLFVEAS VQE+++ L
Sbjct:  116 VKAVKGVLLECDPTVKQIVLNLNERGNFVIEDLDETHLFVEASCVQELQYEL 167          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A163M8B9_ABSGL (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Absidia TaxID=4828 RepID=A0A163M8B9_ABSGL)

HSP 1 Score: 62.8 bits (151), Expect = 1.140e-11
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GVLI CD   +Q +L+LNK+  FV+ +LDETHLF+EAS V  ++  L
Sbjct:    2 VKAVKGVLIECDTTVKQIVLNLNKRGNFVIEDLDETHLFIEASWVDHLKQQL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1X2HID9_SYNRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HID9_SYNRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.710e-11
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV GVL+ CD   +Q +L+LNK   FV+ +LDETHLF++A AV ++++ L
Sbjct:    2 VKAVTGVLLECDTTVKQIVLNLNKTSNFVIEDLDETHLFIDAKAVSQLQYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A367KWQ9_RHIST (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KWQ9_RHIST)

HSP 1 Score: 62.0 bits (149), Expect = 3.100e-11
Identity = 25/52 (48.08%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GVL+ CD   +Q +L+LNK+  F++ +LDETHLF+E+S V ++++ L
Sbjct:   17 VKAVKGVLLECDSTVKQIVLNLNKRGNFIIEDLDETHLFIESSWVDQLKYEL 68          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1Y2H0E8_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H0E8_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 3.820e-11
Identity = 23/52 (44.23%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GV++ CD   +Q IL LN+K +F++ +LD+TH+FV+AS ++++R+ +
Sbjct:    2 VKAVKGVVVECDTSVKQIILGLNEKGKFIIEDLDDTHVFVDASCIEQLRFDI 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A8H7VWE1_9FUNG (RNA polymerase II transcription factor B subunit 5 n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VWE1_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 3.450e-10
Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   19 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 174
            V+AV+GVL+ CD   +Q +L+LNK+  FV+ +LDETHLF+E+S V+++++ L
Sbjct:    2 VKAVKGVLLECDSTVKQIVLNLNKRGNFVIEDLDETHLFIESSWVEQLKYEL 53          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZC95_9STRA7.770e-1674.47General transcription and DNA repair factor IIH su... [more]
A0A167QQ08_PHYB83.350e-1353.85General transcription and DNA repair factor IIH su... [more]
A0A8H7BNP7_9FUNG6.580e-1351.92General transcription and DNA repair factor IIH su... [more]
A0A1C7NDR9_9FUNG3.900e-1250.00General transcription and DNA repair factor IIH su... [more]
A0A068SFM5_9FUNG5.740e-1255.77General transcription and DNA repair factor IIH su... [more]
A0A163M8B9_ABSGL1.140e-1153.85General transcription and DNA repair factor IIH su... [more]
A0A1X2HID9_SYNRA1.710e-1150.00General transcription and DNA repair factor IIH su... [more]
A0A367KWQ9_RHIST3.100e-1148.08General transcription and DNA repair factor IIH su... [more]
A0A1Y2H0E8_9FUNG3.820e-1144.23General transcription and DNA repair factor IIH su... [more]
A0A8H7VWE1_9FUNG3.450e-1050.00RNA polymerase II transcription factor B subunit 5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2054contigP-wetherbeei_contig2054:3279..3644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36080.S2JH62
PFAMsTfb5
Model size174
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue4.5e-13
EggNOG OGsKOG3451@1|root,KOG3451@2759|Eukaryota,3AWPP@33154|Opisthokonta,3Q1GP@4751|Fungi,1GUSN@112252|Fungi incertae sedis
Ec32 ortholog descriptionTFIIH subunit TTDA/Tfb5
Ec32 orthologEc-01_011510.1
DescriptionTranscription factor TFIIH complex subunit Tfb5
Cds size174
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.273158-CDS-P-wetherbeei_contig2054:3278..33281683186202.273158-CDS-P-wetherbeei_contig2054:3278..3328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 3279..3328 +
1683186202.2830536-CDS-P-wetherbeei_contig2054:3520..36441683186202.2830536-CDS-P-wetherbeei_contig2054:3520..3644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 3521..3644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2054.2.1prot_P-wetherbeei_contig2054.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2054 3279..3644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2054.2.1

>prot_P-wetherbeei_contig2054.2.1 ID=prot_P-wetherbeei_contig2054.2.1|Name=mRNA_P-wetherbeei_contig2054.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MSTGAAVRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASA
VQEIRWGL
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mRNA from alignment at P-wetherbeei_contig2054:3279..3644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2054.2.1 ID=mRNA_P-wetherbeei_contig2054.2.1|Name=mRNA_P-wetherbeei_contig2054.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig2054:3279..3644+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACAGGAGCAGCTGTTCGAGCCGTTCAAGGAGTGCTGATCTCATG GTGAGCTTGTCCCGAAGGAAAAGAGGTATCTTAAATCCTTGCTTCGGTCG ACGTCGCTCCGCGGCGTGCTCGGTTAGATCGGTTCGGGGTATCGCCTGAT GAAGCGCCAGCACGCACTCTCTCTGCCCGTGGTCGCGCGTTCTTTCAAGT TCTAATCTCTCGTCGACGCTGAACCTCTCCCTTCCCTCGCAGTGATGTGC CCACGAGGCAGTTCATTCTCCATCTGAACAAGAAGCGGCAGTTTGTGCTT AATGAGCTTGATGAGACGCATCTTTTTGTCGAGGCATCCGCGGTCCAAGA GATCAGGTGGGGGTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2054:3279..3644+

>mRNA_P-wetherbeei_contig2054.2.1 ID=mRNA_P-wetherbeei_contig2054.2.1|Name=mRNA_P-wetherbeei_contig2054.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig2054:3279..3644+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACAGGAGCAGCTGTTCGAGCCGTTCAAGGAGTGCTGATCTCATG
TGATGTGCCCACGAGGCAGTTCATTCTCCATCTGAACAAGAAGCGGCAGT
TTGTGCTTAATGAGCTTGATGAGACGCATCTTTTTGTCGAGGCATCCGCG
GTCCAAGAGATCAGGTGGGGGTTA
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