mRNA_P-wetherbeei_contig20487.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20487.2.1
Unique NamemRNA_P-wetherbeei_contig20487.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: UPI00068F8AED (Ig-like domain-containing protein n=1 Tax=Deinococcus sp. YIM 77859 TaxID=1540221 RepID=UPI00068F8AED)

HSP 1 Score: 89.0 bits (219), Expect = 5.900e-19
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLPPRAAEVGETE 237
            QA+ + VE+ YG GT CGHW E   + ELMTG A+     MPLS +T+GALADLGY+V+YGAAD +++P  AA+ G  E
Sbjct:  377 QAAGVPVEDGYGTGTKCGHWKESVFQSELMTGFAQRG--TMPLSRMTLGALADLGYSVNYGAADTYSIPQTAAQEGGME 453          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: A0A016QUH3_9DEIO (Ig-like protein, group 2 n=1 Tax=Deinococcus phoenicis TaxID=1476583 RepID=A0A016QUH3_9DEIO)

HSP 1 Score: 88.6 bits (218), Expect = 8.370e-19
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLPPRAAE 222
            QA+ + VE+ YG GT CGHW E   + ELMTG A   G  MP+S +T+GALADLGYTV+Y AAD +T+P  AA+
Sbjct:  392 QAAGVPVEDQYGAGTKCGHWKESVFQSELMTGFASRGG--MPMSKITLGALADLGYTVNYAAADAYTIPNVAAQ 463          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: A0A7W8I689_9DEIO (BIG2 domain-containing protein n=1 Tax=Deinococcus metallilatus TaxID=1211322 RepID=A0A7W8I689_9DEIO)

HSP 1 Score: 87.8 bits (216), Expect = 9.610e-19
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLPPRAAE 222
            QA+ + VE+ YG GT C HW E   + ELMTG    SG  MPLS +T+GALADLGYTV+Y AADP+T+P  +A+
Sbjct:  284 QAAGVPVEDQYGEGTQCSHWKESVFQRELMTGFTSRSG--MPLSRITLGALADLGYTVNYAAADPYTIPNVSAQ 355          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: A0A511N8C6_9DEIO (Uncharacterized protein n=2 Tax=Deinococcus cellulosilyticus TaxID=401558 RepID=A0A511N8C6_9DEIO)

HSP 1 Score: 85.5 bits (210), Expect = 2.320e-18
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   13 LLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLP 207
            + VEN YG G  CGHWDE+  K ELMTG   S+ + MPLS +TIGAL DLGY V+Y AADP++LP
Sbjct:  176 IPVENQYGAGNKCGHWDEETFKSELMTGF--STSNPMPLSKMTIGALQDLGYRVNYNAADPYSLP 238          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: UPI001FE13D3E (leishmanolysin n=1 Tax=Deinococcus misasensis TaxID=392413 RepID=UPI001FE13D3E)

HSP 1 Score: 84.3 bits (207), Expect = 6.940e-18
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLP 207
            +   + VEN YG GT CGHWDE+  K ELMTG   S+ + MPLS +T+GAL DLGY V+  AADP+TLP
Sbjct:  180 KTGGVPVENQYGAGTKCGHWDEETFKSELMTGF--STSNPMPLSKLTLGALQDLGYEVNLQAADPYTLP 246          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: UPI0016657995 (peptidase n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI0016657995)

HSP 1 Score: 83.6 bits (205), Expect = 1.550e-17
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLP 207
            +A  + VEN YG G  CGHWDE+  K ELMTG   S+ + MPLS +TIGAL DLGY V+YG AD + LP
Sbjct:  184 EAGFIPVENQYGAGNKCGHWDEETFKTELMTGF--STSNPMPLSKMTIGALEDLGYQVNYGVADTYALP 250          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: A0A1W1VL65_9DEIO (Bacterial surface proteins containing Ig-like domains n=1 Tax=Deinococcus hopiensis KR-140 TaxID=695939 RepID=A0A1W1VL65_9DEIO)

HSP 1 Score: 84.7 bits (208), Expect = 2.110e-17
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLPPRAAE 222
            QA+ + VE+ YG GT CGHW E   + ELMTG A + GS MPLS +T+GALADLGY+V+Y AAD +T+P  +A+
Sbjct:  481 QAAGVPVEDQYGEGTKCGHWKESVFQNELMTGFA-NKGS-MPLSRITLGALADLGYSVNYAAADAYTIPSVSAQ 552          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: Q1IXS4_DEIGD (Metalloendopeptidase M8 containing Ig-like domains n=3 Tax=Deinococcus TaxID=1298 RepID=Q1IXS4_DEIGD)

HSP 1 Score: 84.3 bits (207), Expect = 2.590e-17
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    4 ASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLPPRAAE 222
            A+ + VEN YG GT C HW E   + ELMTG A  S   MPLS +T+GALADLGY+V+Y AADP+T+P   A+
Sbjct:  373 AAGVPVENQYGEGTKCAHWKESVFQSELMTGFA--SRGPMPLSRLTLGALADLGYSVNYAAADPYTIPNVGAQ 443          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: A0A4P5WZA4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5WZA4_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 2.570e-16
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    7 SALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLPPRAA 219
            +++ VEN  GPGT   HW E  ++ ELMTG A  SG  MPLS +T+G LADLGY V+YGAAD ++ PP  A
Sbjct:  418 TSVPVENTGGPGTRDSHWRESTMQTELMTGYASPSGVAMPLSRITVGGLADLGYAVNYGAADLYSRPPVVA 488          
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Match: UPI00068D7A1E (hypothetical protein n=1 Tax=Deinococcus misasensis TaxID=392413 RepID=UPI00068D7A1E)

HSP 1 Score: 79.7 bits (195), Expect = 4.230e-16
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGALADLGYTVDYGAADPFTLP 207
            Q+  + VEN YG GT CGHW E   K ELMTG A +    MPLS +T+GAL DLGY V+Y AAD + +P
Sbjct:  195 QSGNVPVENQYGAGTKCGHWSESLFKTELMTGFANAG--PMPLSKMTVGALEDLGYVVNYNAADAYMMP 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20487.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00068F8AED5.900e-1954.43Ig-like domain-containing protein n=1 Tax=Deinococ... [more]
A0A016QUH3_9DEIO8.370e-1956.76Ig-like protein, group 2 n=1 Tax=Deinococcus phoen... [more]
A0A7W8I689_9DEIO9.610e-1956.76BIG2 domain-containing protein n=1 Tax=Deinococcus... [more]
A0A511N8C6_9DEIO2.320e-1861.54Uncharacterized protein n=2 Tax=Deinococcus cellul... [more]
UPI001FE13D3E6.940e-1857.97leishmanolysin n=1 Tax=Deinococcus misasensis TaxI... [more]
UPI00166579951.550e-1757.97peptidase n=1 Tax=Deinococcus roseus TaxID=392414 ... [more]
A0A1W1VL65_9DEIO2.110e-1756.76Bacterial surface proteins containing Ig-like doma... [more]
Q1IXS4_DEIGD2.590e-1756.16Metalloendopeptidase M8 containing Ig-like domains... [more]
A0A4P5WZA4_9BACT2.570e-1654.93Uncharacterized protein n=1 Tax=Planctomycetia bac... [more]
UPI00068D7A1E4.230e-1655.07hypothetical protein n=1 Tax=Deinococcus misasensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20487contigP-wetherbeei_contig20487:415..876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1540221.JQNI01000002_gene1701
PFAMsBig_2,Big_3_5,DUF3616,F5_F8_type_C,Peptidase_M8,Polysacc_lyase
Model size237
Max annot lvl2|Bacteria
KEGG koko:K07004
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.67e-20
EggNOG OGsCOG3291@1|root,COG5492@1|root,COG3291@2|Bacteria,COG5492@2|Bacteria
Descriptiondomain, Protein
Cds size237
COG categoryN
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.9972997-CDS-P-wetherbeei_contig20487:414..5921683186200.9972997-CDS-P-wetherbeei_contig20487:414..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20487 415..592 -
1683186201.0073245-CDS-P-wetherbeei_contig20487:817..8761683186201.0073245-CDS-P-wetherbeei_contig20487:817..876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20487 818..876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20487.2.1prot_P-wetherbeei_contig20487.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20487 415..876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20487.2.1

>prot_P-wetherbeei_contig20487.2.1 ID=prot_P-wetherbeei_contig20487.2.1|Name=mRNA_P-wetherbeei_contig20487.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
QASALLVENNYGPGTACGHWDEKQLKGELMTGLAESSGSKMPLSVVTIGA
LADLGYTVDYGAADPFTLPPRAAEVGETE
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mRNA from alignment at P-wetherbeei_contig20487:415..876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20487.2.1 ID=mRNA_P-wetherbeei_contig20487.2.1|Name=mRNA_P-wetherbeei_contig20487.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig20487:415..876- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCATCGGCGCTGCTGGTCGAAAACAACTACGGCCCCGGCACTGCCTG CGGTCATTGGTGTGTTTTCCCGATGAATGACAATTCATCGTCTCCGACTG CAATTGTCTTTTAGATTGCGAGCGGCAAGCGATCAGGCCGGTGGCGGCGG GTGGACTGGAAGAAACTTTGACGTTTCCGGAGCACGACGCACATTTCCTG TCATTTGGCGATAACAGTCAGAGTGCGAGTGTGCCAACCGCGCGCGACTT CCCCCCACCACCCTTACCAAAATCAATTGCACAGGGACGAGAAGCAGTTG AAGGGCGAGCTGATGACGGGACTCGCCGAATCGTCGGGTTCTAAAATGCC TCTGAGCGTTGTCACAATCGGCGCCCTGGCGGACCTGGGATACACGGTGG ACTACGGTGCAGCGGACCCCTTCACGCTGCCCCCGAGAGCCGCGGAGGTG GGCGAGACGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20487:415..876-

>mRNA_P-wetherbeei_contig20487.2.1 ID=mRNA_P-wetherbeei_contig20487.2.1|Name=mRNA_P-wetherbeei_contig20487.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig20487:415..876- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCATCGGCGCTGCTGGTCGAAAACAACTACGGCCCCGGCACTGCCTG
CGGTCATTGGGACGAGAAGCAGTTGAAGGGCGAGCTGATGACGGGACTCG
CCGAATCGTCGGGTTCTAAAATGCCTCTGAGCGTTGTCACAATCGGCGCC
CTGGCGGACCTGGGATACACGGTGGACTACGGTGCAGCGGACCCCTTCAC
GCTGCCCCCGAGAGCCGCGGAGGTGGGCGAGACGGAG
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