mRNA_P-wetherbeei_contig20470.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20470.1.1
Unique NamemRNA_P-wetherbeei_contig20470.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20470.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20470contigP-wetherbeei_contig20470:147..1222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size677
Hectar predicted targeting categoryother localisation
Exons2
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.6821017-UTR-P-wetherbeei_contig20470:146..2371683186200.6821017-UTR-P-wetherbeei_contig20470:146..237Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20470 147..237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.6919007-CDS-P-wetherbeei_contig20470:237..5171683186200.6919007-CDS-P-wetherbeei_contig20470:237..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20470 238..517 +
1683186200.7018363-CDS-P-wetherbeei_contig20470:917..12221683186200.7018363-CDS-P-wetherbeei_contig20470:917..1222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20470 918..1222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20470.1.1prot_P-wetherbeei_contig20470.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20470 238..1222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20470.1.1

>prot_P-wetherbeei_contig20470.1.1 ID=prot_P-wetherbeei_contig20470.1.1|Name=mRNA_P-wetherbeei_contig20470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MNGVKNQRQPAFEAARRYHFAGQLQNRWKVCSPADVGALRCTCSDVPSGQ
GDGIAMEDSDNEASGTAAVGVLVYDCIRYSSTAVASWYLSDGSEHVRLAF
VEAPPLEWLGKCVALTAWRLIAAASAGRAPAAAAPANAVVGQPKKQQLTS
AAYVEVSGCVLLSCDAPAAAATATAGAIRALAAAAAAAATVGTVV
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mRNA from alignment at P-wetherbeei_contig20470:147..1222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20470.1.1 ID=mRNA_P-wetherbeei_contig20470.1.1|Name=mRNA_P-wetherbeei_contig20470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1076bp|location=Sequence derived from alignment at P-wetherbeei_contig20470:147..1222+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGCCAAGTAAGACACAAGCCGGTCCTGCTCTGTCTTATTGACTACATC
CCAACCACCGCACAGGACGGCGTTGTGGTCGCGATGGGACCATGAACGGC
GTAAAGAACCAACGGCAGCCTGCGTTCGAGGCGGCTCGACGCTACCACTT
CGCCGGCCAGTTGCAGAACCGATGGAAAGTGTGCTCTCCGGCCGACGTGG
GGGCGCTTCGGTGCACGTGCAGCGACGTGCCATCGGGACAGGGCGACGGG
ATTGCGATGGAGGATTCGGACAATGAAGCTTCCGGGACGGCGGCGGTGGG
TGTGCTGGTCTATGACTGCATCCGCTACAGCAGTACCGCGGTGGCGTCGT
GGTATCTGAGCGACGGCTCCGGTGAGAGCACAAGGTTTTGCTCTTCACAG
CACTGCTGTCGACTCCGATCGCTGCGGCCATCGTTGTGGCACCTTGGTTC
TCTTCCGCACTAGATCCTCTTGGTTGTTCTGAAAGAGCCAGAGTGGCTTT
TGTCTGCAACTTTGCCACTGACGTTCCCTGAGAGTGATGATGAATTTGCA
CTGTCAGGATCATGGAGGAATAACAGATCTGCACACAAGGATGAGTAGGT
TGTAGTCTTTCAAACGGTTGAGCGGGTGGCGCTCGCTGTTGATATTTCTT
CTCACCGCTGTACTCGTAGTTGCGGTTTGCAACCCTGATCTCTTTCCCGA
TTCTCTTAGTATTACATTAGTGAGTTCTCCTTTATCCCCTCATCAATCGG
TCCTTCGTCCCGCTCATCCAGAGCACGTCCGGCTTGCCTTTGTGGAAGCG
CCGCCGCTGGAGTGGCTCGGCAAGTGCGTCGCCCTCACGGCCTGGAGGCT
CATCGCCGCCGCCAGCGCCGGCCGGGCGCCTGCCGCTGCTGCTCCGGCCA
ACGCTGTCGTTGGCCAGCCAAAGAAACAGCAGCTGACGTCGGCCGCCTAT
GTAGAGGTTAGCGGCTGCGTGCTTCTCTCCTGCGACGCCCCTGCAGCTGC
TGCCACTGCAACTGCTGGCGCCATCCGTGCTCTTGCCGCAGCGGCTGCTG
CTGCTGCCACCGTTGGCACTGTCGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20470:147..1222+

>mRNA_P-wetherbeei_contig20470.1.1 ID=mRNA_P-wetherbeei_contig20470.1.1|Name=mRNA_P-wetherbeei_contig20470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig20470:147..1222+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGGCGTAAAGAACCAACGGCAGCCTGCGTTCGAGGCGGCTCGACG
CTACCACTTCGCCGGCCAGTTGCAGAACCGATGGAAAGTGTGCTCTCCGG
CCGACGTGGGGGCGCTTCGGTGCACGTGCAGCGACGTGCCATCGGGACAG
GGCGACGGGATTGCGATGGAGGATTCGGACAATGAAGCTTCCGGGACGGC
GGCGGTGGGTGTGCTGGTCTATGACTGCATCCGCTACAGCAGTACCGCGG
TGGCGTCGTGGTATCTGAGCGACGGCTCCGAGCACGTCCGGCTTGCCTTT
GTGGAAGCGCCGCCGCTGGAGTGGCTCGGCAAGTGCGTCGCCCTCACGGC
CTGGAGGCTCATCGCCGCCGCCAGCGCCGGCCGGGCGCCTGCCGCTGCTG
CTCCGGCCAACGCTGTCGTTGGCCAGCCAAAGAAACAGCAGCTGACGTCG
GCCGCCTATGTAGAGGTTAGCGGCTGCGTGCTTCTCTCCTGCGACGCCCC
TGCAGCTGCTGCCACTGCAACTGCTGGCGCCATCCGTGCTCTTGCCGCAG
CGGCTGCTGCTGCTGCCACCGTTGGCACTGTCGTT
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