mRNA_P-wetherbeei_contig20456.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20456.1.1
Unique NamemRNA_P-wetherbeei_contig20456.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20456.1.1 vs. uniprot
Match: A0A7W9SMY6_9BACT (Uncharacterized protein n=1 Tax=Armatimonas rosea TaxID=685828 RepID=A0A7W9SMY6_9BACT)

HSP 1 Score: 110 bits (274), Expect = 5.800e-26
Identity = 59/149 (39.60%), Postives = 89/149 (59.73%), Query Frame = 1 
Query:    1 KAQQQQQGANGSFGAIYTMQNNFNLQLISARYSIEPHNDYNGTIANDGEKLLILTYAIKNASPAENYTGGYEFVAVDEADNNVANGSGTTKLEKSGSAEFNANLKPSQGIGQDPTN-RLTVAFVLPAKAKIRKIMVKPGRKAVASEETF 444
            K Q Q QG NG FG +Y++QN  N+ ++SA+Y++EP   Y+ T     EKL++L  A+KN SP +N+     F  + +A  N+   + +  L+ +  AEF   L+P QG+GQ   N  +  AFV+PAKA+I K+M+  GR   A E+ F
Sbjct:   42 KGQGQLQGVNGQFGVVYSLQNELNVSILSAKYTLEPFRCYSATAPKTEEKLVVLNVALKNVSPKDNWFNSDGFFTLVDAQGNLYPNA-SWALQSNPDAEFAPTLRPGQGLGQATLNDAVQAAFVVPAKARIVKVMINQGRLGRADEKVF 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W9SMY6_9BACT5.800e-2639.60Uncharacterized protein n=1 Tax=Armatimonas rosea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20456contigP-wetherbeei_contig20456:335..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size447
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.3049634-CDS-P-wetherbeei_contig20456:334..7811683186200.3049634-CDS-P-wetherbeei_contig20456:334..781Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20456 335..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20456.1.1prot_P-wetherbeei_contig20456.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20456 335..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20456.1.1

>prot_P-wetherbeei_contig20456.1.1 ID=prot_P-wetherbeei_contig20456.1.1|Name=mRNA_P-wetherbeei_contig20456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
KAQQQQQGANGSFGAIYTMQNNFNLQLISARYSIEPHNDYNGTIANDGEK
LLILTYAIKNASPAENYTGGYEFVAVDEADNNVANGSGTTKLEKSGSAEF
NANLKPSQGIGQDPTNRLTVAFVLPAKAKIRKIMVKPGRKAVASEETF*
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mRNA from alignment at P-wetherbeei_contig20456:335..781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20456.1.1 ID=mRNA_P-wetherbeei_contig20456.1.1|Name=mRNA_P-wetherbeei_contig20456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig20456:335..781- (Phaeothamnion wetherbeei SAG_119_79)
AAAGCTCAGCAGCAGCAACAGGGAGCCAACGGCTCCTTCGGCGCCATCTA
CACGATGCAGAACAACTTCAATCTGCAACTCATCAGCGCGCGCTACAGCA
TTGAGCCCCACAACGATTACAATGGCACCATCGCCAACGACGGCGAGAAA
CTCCTGATTCTGACTTACGCCATCAAGAATGCGAGCCCGGCCGAGAACTA
CACGGGGGGCTACGAATTTGTGGCTGTCGACGAGGCGGACAATAATGTCG
CGAACGGCTCTGGGACTACGAAGCTCGAGAAAAGCGGCAGCGCGGAATTC
AACGCGAACCTTAAGCCGTCTCAGGGCATCGGCCAGGACCCGACGAATCG
TCTGACCGTCGCATTCGTGCTTCCCGCCAAAGCCAAGATTAGGAAAATTA
TGGTCAAGCCGGGTCGCAAAGCGGTGGCTTCCGAAGAGACATTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20456:335..781-

>mRNA_P-wetherbeei_contig20456.1.1 ID=mRNA_P-wetherbeei_contig20456.1.1|Name=mRNA_P-wetherbeei_contig20456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig20456:335..781- (Phaeothamnion wetherbeei SAG_119_79)
AAAGCTCAGCAGCAGCAACAGGGAGCCAACGGCTCCTTCGGCGCCATCTA
CACGATGCAGAACAACTTCAATCTGCAACTCATCAGCGCGCGCTACAGCA
TTGAGCCCCACAACGATTACAATGGCACCATCGCCAACGACGGCGAGAAA
CTCCTGATTCTGACTTACGCCATCAAGAATGCGAGCCCGGCCGAGAACTA
CACGGGGGGCTACGAATTTGTGGCTGTCGACGAGGCGGACAATAATGTCG
CGAACGGCTCTGGGACTACGAAGCTCGAGAAAAGCGGCAGCGCGGAATTC
AACGCGAACCTTAAGCCGTCTCAGGGCATCGGCCAGGACCCGACGAATCG
TCTGACCGTCGCATTCGTGCTTCCCGCCAAAGCCAAGATTAGGAAAATTA
TGGTCAAGCCGGGTCGCAAAGCGGTGGCTTCCGAAGAGACATTCTAG
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