mRNA_P-wetherbeei_contig2043.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2043.4.1
Unique NamemRNA_P-wetherbeei_contig2043.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A835YV88_9STRA (Flavoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV88_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.370e-48
Identity = 79/123 (64.23%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    7 HRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAPPIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
            HRPRILL  +GSVATVK PRLA++L+EFA+V++I T+ S  FL  A+DYD  +  A+ A  PP+E   DE EW +W+ +GD V H+ LR+WADL+LIAPLSANTLGK+ANGLCDNLLTCVARA
Sbjct:   12 HRPRILLGATGSVATVKIPRLALLLQEFADVKIIVTKASRAFLDCARDYDRPSYDAWSALEPPMEVLADEGEWGMWSKVGDPVQHVQLREWADLLLIAPLSANTLGKLANGLCDNLLTCVARA 134          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: K3WBB5_GLOUD (Flavoprotein domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBB5_GLOUD)

HSP 1 Score: 153 bits (387), Expect = 7.410e-45
Identity = 74/123 (60.16%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    7 HRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAPPIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
             +PRILLC SGSVATVK P LA+ L EFAEV+L+ T+    FL +  +Y+  A  AF A A PIE   DE EW  W  +GD VLHI L+DWAD++L+AP+SANTL K+ANGL DNLLTC+ARA
Sbjct:   10 RKPRILLCASGSVATVKVPELALKLAEFAEVKLVVTKAGDFFLQKVSEYNPSAWGAFTARAEPIEVIRDEHEWDAWRVVGDSVLHIELKDWADVLLLAPMSANTLAKIANGLSDNLLTCIARA 132          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A6A3FWR6_9STRA (Flavoprotein domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FWR6_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.820e-43
Identity = 77/131 (58.78%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    4 SHRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAP-------PIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
            S RPR+LLC SGSVATVK P +A+ L   AEVR++ T+++  FL RAKDYDAK  A F AA          +    DE+EW  WN +GD V HI L+DWADL+L+AP+SANTL K+ANGL DNLLTCVARA
Sbjct:    6 SRRPRVLLCASGSVATVKVPEIAVHLSRTAEVRVVLTKSADFFLQRAKDYDAKTWAEFNAATQLTGDGLGRVAVVRDEDEWEAWNVVGDSVRHIELKDWADLLLLAPMSANTLAKLANGLADNLLTCVARA 136          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A3M6VEU8_9STRA (Flavoprotein domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEU8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.200e-40
Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    7 HRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAP--------PIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
             +P +LLC SGSVAT+K P +A+ L E AEV ++ T+++  FL RAKDYDA A A F AA           IE   DE+EW VWN +GD V HI L+DWAD+ML+AP+SANTLGK+ANGL +NL+TC+ARA
Sbjct:    5 RKPHVLLCASGSVATIKVPEIAVRLSETAEVCVVLTKSADFFLQRAKDYDAIAWAEFIAATQFSHSEHGKKIEVVRDEDEWKVWNIVGDRVHHIELKDWADVMLLAPMSANTLGKLANGLANNLVTCIARA 135          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A484DQL6_BRELC (Flavoprotein domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQL6_BRELC)

HSP 1 Score: 142 bits (359), Expect = 1.820e-40
Identity = 74/131 (56.49%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    4 SHRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAP-PIEEFG------DEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
            + +PR+LLC SGSVATVK P +A  L E AE+ ++ T+T+  FL RAKDY+A A   +  A   PIE  G      D++EW  W  +GD V HI L+DWAD+ML+AP+SANTLGK+ANGL DNLLTCVARA
Sbjct:    4 TRKPRVLLCASGSVATVKIPEIATRLNEVAEICVVVTKTADFFLQRAKDYNAAAWIEYDTATQLPIESQGRIAVVRDKDEWESWGIVGDSVRHIELKDWADVMLLAPMSANTLGKLANGLADNLLTCVARA 134          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A485LRS5_9STRA (Aste57867_24547 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRS5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.750e-40
Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    7 HRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAPPIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
             RPR+LL  SGSVATVK P LAM L E A+V+++ T+ +  F+ +A  Y+A A AAF+A A PI    D+ EW+ WNA+GD VLHI LR+WAD++ IAPLSANT+ K+A+GLCDNLLTCV RA
Sbjct:  119 RRPRVLLAASGSVATVKIPELAMKLAEVADVQVVLTKAASFFMEKASTYNASAFAAFQALAIPIHH--DDNEWSEWNAMGDAVLHIHLREWADVLCIAPLSANTMAKIAHGLCDNLLTCVVRA 239          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A3F2RXL9_9STRA (Flavoprotein domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXL9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.550e-40
Identity = 72/131 (54.96%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    4 SHRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAPPIEE-------FGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
            + RPR+LLC SGSVATVK P +A+ L E  EV ++ T+++  FL RAKDY+A A   F AA    E          DE+EW  WN +GD V HI L+DWAD+M++AP+SANTLGK+ANGL DNLLTC+ RA
Sbjct:    3 TRRPRVLLCASGSVATVKVPEIAVRLSETTEVCVVLTKSADFFLQRAKDYNATAWKTFDAAIKLSENEPGYIPVVRDEDEWQAWNVVGDSVRHIELKDWADVMVLAPMSANTLGKLANGLADNLLTCITRA 133          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A0P1A8D9_PLAHL (Phosphopantothenoylcysteine decarboxylase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8D9_PLAHL)

HSP 1 Score: 140 bits (353), Expect = 2.480e-39
Identity = 75/130 (57.69%), Postives = 90/130 (69.23%), Query Frame = 1
Query:    7 HRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAP-PIEEFG------DEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
             RPR+LLC SGSVA VK P +A  L   AEV ++ T+++  FL RAKDYDA A   F  A   P  + G      DE+EW  WN +GD V HI L+DWAD+ML+APLSANTLGK+ANGL DNLLTC+ARA
Sbjct:   24 RRPRVLLCASGSVAAVKIPEIANRLTGMAEVCVVLTKSADFFLKRAKDYDAAAHTQFCTAIHLPDGDQGKITIVRDEDEWKTWNVVGDSVRHIELKDWADVMLLAPLSANTLGKLANGLADNLLTCIARA 153          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A067CM62_SAPPC (Flavoprotein domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CM62_SAPPC)

HSP 1 Score: 139 bits (350), Expect = 2.730e-39
Identity = 68/123 (55.28%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    7 HRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAPPIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
             RPR+L+  SGSVAT+K P L + L E+AEV+++ T+++  FL +A  Y+    AAF+A    I    DE+EW  WN IGD +LHI LRDWAD+ ++APLSAN++ K+ANGLCDNLLTCVARA
Sbjct:    5 RRPRVLVAASGSVATIKVPELVVKLAEYAEVQVVLTKSANFFLPKAAAYNPTMFAAFEALNVTIHR--DEDEWNAWNVIGDPILHIQLRDWADVCVVAPLSANSMAKLANGLCDNLLTCVARA 125          
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Match: A0A329SHG6_9STRA (Flavoprotein domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SHG6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.860e-39
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   10 RPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKDYDAKAAAAFKAAAP-------PIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIAPLSANTLGKMANGLCDNLLTCVARA 375
            RPR+LLC SGSVATVK P +A+ L E AEV ++ T+++  FL RAKDY++ A   F +A          I    DE+EW  WN +GD V HI L+DWAD+ML+AP+SANTL K+ANGL DNLLTCVARA
Sbjct:    5 RPRVLLCASGSVATVKVPEIAVRLSETAEVCVVLTKSAEFFLQRAKDYNSVAWEVFFSATQLPDGGQGRIAVVRDEDEWEAWNVVGDSVRHIELKDWADVMLLAPMSANTLAKLANGLADNLLTCVARA 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2043.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YV88_9STRA7.370e-4864.23Flavoprotein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
K3WBB5_GLOUD7.410e-4560.16Flavoprotein domain-containing protein n=1 Tax=Glo... [more]
A0A6A3FWR6_9STRA1.820e-4358.78Flavoprotein domain-containing protein n=2 Tax=Phy... [more]
A0A3M6VEU8_9STRA1.200e-4056.49Flavoprotein domain-containing protein n=1 Tax=Per... [more]
A0A484DQL6_BRELC1.820e-4056.49Flavoprotein domain-containing protein n=1 Tax=Bre... [more]
A0A485LRS5_9STRA2.750e-4059.35Aste57867_24547 protein n=1 Tax=Aphanomyces stella... [more]
A0A3F2RXL9_9STRA3.550e-4054.96Flavoprotein domain-containing protein n=3 Tax=Phy... [more]
A0A0P1A8D9_PLAHL2.480e-3957.69Phosphopantothenoylcysteine decarboxylase n=1 Tax=... [more]
A0A067CM62_SAPPC2.730e-3955.28Flavoprotein domain-containing protein n=2 Tax=Sap... [more]
A0A329SHG6_9STRA2.860e-3956.59Flavoprotein domain-containing protein n=2 Tax=Phy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2043contigP-wetherbeei_contig2043:5226..6254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T002256
PFAMsFlavoprotein
Model size375
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.22e-45
EggNOG OGsCOG0452@1|root,KOG0672@2759|Eukaryota,1MDRS@121069|Pythiales
DescriptionPhosphopantothenoylcysteine decarboxylase. Source PGD
Cds size375
COG categoryDP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.6276762-CDS-P-wetherbeei_contig2043:5225..53211683186199.6276762-CDS-P-wetherbeei_contig2043:5225..5321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2043 5226..5321 +
1683186199.6367252-CDS-P-wetherbeei_contig2043:5411..55821683186199.6367252-CDS-P-wetherbeei_contig2043:5411..5582Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2043 5412..5582 +
1683186199.6447256-CDS-P-wetherbeei_contig2043:5760..58501683186199.6447256-CDS-P-wetherbeei_contig2043:5760..5850Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2043 5761..5850 +
1683186199.6535857-CDS-P-wetherbeei_contig2043:6236..62541683186199.6535857-CDS-P-wetherbeei_contig2043:6236..6254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2043 6237..6254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2043.4.1prot_P-wetherbeei_contig2043.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2043 5226..6254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2043.4.1

>prot_P-wetherbeei_contig2043.4.1 ID=prot_P-wetherbeei_contig2043.4.1|Name=mRNA_P-wetherbeei_contig2043.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MSHRPRILLCISGSVATVKGPRLAMMLREFAEVRLIKTQTSCHFLSRAKD
YDAKAAAAFKAAAPPIEEFGDEEEWTVWNAIGDDVLHIVLRDWADLMLIA
PLSANTLGKMANGLCDNLLTCVARA
back to top

mRNA from alignment at P-wetherbeei_contig2043:5226..6254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2043.4.1 ID=mRNA_P-wetherbeei_contig2043.4.1|Name=mRNA_P-wetherbeei_contig2043.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig2043:5226..6254+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCATCGCCCGCGCATTCTGCTTTGCATCTCCGGCAGCGTCGCGAC GGTGAAGGGCCCTCGGCTGGCGATGATGCTTCGCGAGTTTGCCGAGGTGG GCACATGACTTTTTCTCCTTTTGTAGCATCTGACAAAGTTAGCCATAAAC AAACTATGTCACATGGTTTGCTGCTTCTCTAGCCAGGTGCGGCTCATCAA GACGCAGACTAGCTGTCACTTCCTCAGTCGAGCAAAGGATTACGACGCCA AGGCGGCCGCTGCATTCAAAGCTGCCGCCCCGCCAATAGAAGAGTTTGGC GACGAAGAGGAATGGACGGTGTGGAACGCGATCGGCGACGACGTTCTTCA TATCGTGGTACGTCCTCGCGGTTGTTGATGTTGCGATTCCACGTTTTGCA AATAAGGGTGACATTATGGATGAGCAGCACTGCAGCATACGTATTCAGCC AGTGCAGTTTGAGAATGGTAACGAAGTTGACAACGATTCATTGGCTTCCT TTTTTGCCGCCCTTCCTCTGGCGTGTCTGTCTCAGCTCCGAGACTGGGCA GACCTTATGCTCATTGCGCCTTTATCGGCCAACACGCTAGGAAAGATGGC CAACGGACTTTGTGACAACCTGCTGGTACGTTTTTCTGCAATCTGTAGGT TTCTCCTCTCTACCAAATTCTATATGACAGCCCCAGGGATTATCTGCTTT TGACGATCGGTTCTCCGAATTTGTACTTTCTAGTACGGCAGCTTAAGGCA AAGTTGTCCTCAACCGAGATAAACAGCCTTTGCCGTGTTGTGATGAGGTT TGCCATCAATCCGGCTAGTCTGTCTTTAGGCTGGTTGAGAAGTCTCTTTG CTCGACTTTTGCTTTCAAGGACCGTATTTACGAACGTTTTCTTGTTTAAC TTCCCCGATTGAGAACCCGTTGGACACCTGATAGAGGAGAACCATAGCTT TCCAATGCGCAAGCAACACTTGACTGCCATGGTTTTACCATCTGCCATTT CTTGTCATCAGACGTGCGTGGCGCGCGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2043:5226..6254+

>mRNA_P-wetherbeei_contig2043.4.1 ID=mRNA_P-wetherbeei_contig2043.4.1|Name=mRNA_P-wetherbeei_contig2043.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig2043:5226..6254+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCATCGCCCGCGCATTCTGCTTTGCATCTCCGGCAGCGTCGCGAC
GGTGAAGGGCCCTCGGCTGGCGATGATGCTTCGCGAGTTTGCCGAGGTGC
GGCTCATCAAGACGCAGACTAGCTGTCACTTCCTCAGTCGAGCAAAGGAT
TACGACGCCAAGGCGGCCGCTGCATTCAAAGCTGCCGCCCCGCCAATAGA
AGAGTTTGGCGACGAAGAGGAATGGACGGTGTGGAACGCGATCGGCGACG
ACGTTCTTCATATCGTGCTCCGAGACTGGGCAGACCTTATGCTCATTGCG
CCTTTATCGGCCAACACGCTAGGAAAGATGGCCAACGGACTTTGTGACAA
CCTGCTGACGTGCGTGGCGCGCGCC
back to top