mRNA_P-wetherbeei_contig2039.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2039.2.1
Unique NamemRNA_P-wetherbeei_contig2039.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2039.2.1 vs. uniprot
Match: A0A842PVC8_9ARCH (AAA family ATPase (Fragment) n=1 Tax=Nitrososphaera sp. TaxID=1971748 RepID=A0A842PVC8_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 5.680e-6
Identity = 55/212 (25.94%), Postives = 89/212 (41.98%), Query Frame = 1 
Query:   73 LWCLLARPKTINDMHGNNDAAQLVDEWFSSHLKTASTSSVLFVEGPCGSGKSLAVNLAAQSHGFRTIMAFASESRSMARFDAHVRQATAFQNFGVVV-------LDEFESFA--EDHAGLDNVTRFINTFSARPASSPRVLLVCISNEASDAFSRIIDRSTFVQFDPLSISDTHGVLKHAHRECPTTVAPMDLYLFASQVTGDARQAINQFQ 681
            +W    RPKT+ +M GN DA  +V +W +  +   S S  L + GP G+GK+  V+  A+   +  +   AS+ R+     A +     FQN   ++       LDE +  +  ED  GLD +T  I          P V ++  +N+ S    ++      V+F+P+        L H  +     +A  D         GD R  +N  Q
Sbjct:    2 MWSEKHRPKTVQEMVGNEDARLVVIKWLTGWV---SGSRPLLLLGPPGTGKTTLVHTLARQLDYDVVEMNASDIRNKDALQARI--TPVFQNTANLIGKKIMLFLDEVDGISGREDTGGLDTLTNLIK--------EPTVPVIMAANKKSLKIMKLAKACKIVEFNPVPPRLLLLFLDHVLQSEGVKLASGDKTSIIDNSRGDIRSLLNSAQ 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2039.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A842PVC8_9ARCH5.680e-625.94AAA family ATPase (Fragment) n=1 Tax=Nitrososphaer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2039contigP-wetherbeei_contig2039:2073..2762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog694430.Natoc_2867
Preferred namerfcL
PFAMsAAA
Model size690
Max annot lvl183963|Halobacteria
KEGG koko:K04800
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-06
EggNOG OGsCOG0470@1|root,arCOG00470@2157|Archaea,2XT81@28890|Euryarchaeota,23TJW@183963|Halobacteria
Ec32 ortholog descriptionEsV-1-138 replication factor C large subunit
Ec32 orthologEc-06_005470.1
DescriptionPart of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA
Cds size684
COG categoryL
BRITEko00000,ko00001,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186198.2223911-CDS-P-wetherbeei_contig2039:2072..27561683186198.2223911-CDS-P-wetherbeei_contig2039:2072..2756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2039 2073..2756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186198.2346454-UTR-P-wetherbeei_contig2039:2756..27621683186198.2346454-UTR-P-wetherbeei_contig2039:2756..2762Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2039 2757..2762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2039.2.1prot_P-wetherbeei_contig2039.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2039 2073..2756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2039.2.1

>prot_P-wetherbeei_contig2039.2.1 ID=prot_P-wetherbeei_contig2039.2.1|Name=mRNA_P-wetherbeei_contig2039.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
MVSWGDSIVLSSPVDDTLDTNSLWCLLARPKTINDMHGNNDAAQLVDEWF
SSHLKTASTSSVLFVEGPCGSGKSLAVNLAAQSHGFRTIMAFASESRSMA
RFDAHVRQATAFQNFGVVVLDEFESFAEDHAGLDNVTRFINTFSARPASS
PRVLLVCISNEASDAFSRIIDRSTFVQFDPLSISDTHGVLKHAHRECPTT
VAPMDLYLFASQVTGDARQAINQFQIAF
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mRNA from alignment at P-wetherbeei_contig2039:2073..2762-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2039.2.1 ID=mRNA_P-wetherbeei_contig2039.2.1|Name=mRNA_P-wetherbeei_contig2039.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig2039:2073..2762- (Phaeothamnion wetherbeei SAG_119_79)
CAATCAATGGTATCGTGGGGGGATTCCATCGTTCTGTCCTCGCCGGTTGA
TGACACTCTTGACACCAATTCCTTATGGTGCCTCCTTGCAAGACCCAAAA
CTATCAATGATATGCACGGAAACAATGATGCCGCGCAACTTGTCGACGAG
TGGTTTTCATCCCATTTGAAAACTGCAAGCACGTCAAGTGTCTTGTTTGT
CGAAGGGCCTTGCGGGAGTGGAAAGAGTCTGGCGGTGAATCTAGCAGCCC
AATCCCACGGTTTTCGAACCATTATGGCGTTTGCCAGTGAATCTCGATCC
ATGGCACGGTTTGACGCACACGTGCGACAAGCCACGGCGTTTCAAAACTT
TGGGGTTGTGGTTCTTGACGAGTTTGAATCATTCGCAGAGGATCACGCAG
GACTCGACAACGTGACCCGTTTCATCAATACGTTCAGTGCCAGGCCCGCA
TCATCCCCCCGAGTTCTACTGGTGTGCATTTCAAACGAGGCGTCGGATGC
ATTTAGTAGAATCATTGACAGGTCTACCTTTGTGCAATTTGATCCGCTTT
CGATATCCGATACCCATGGGGTACTGAAGCATGCCCATCGTGAGTGCCCC
ACAACCGTCGCCCCGATGGATCTGTACCTGTTTGCAAGTCAAGTGACCGG
GGATGCACGGCAGGCAATCAATCAGTTTCAGATTGCGTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2039:2073..2762-

>mRNA_P-wetherbeei_contig2039.2.1 ID=mRNA_P-wetherbeei_contig2039.2.1|Name=mRNA_P-wetherbeei_contig2039.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig2039:2073..2762- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATCGTGGGGGGATTCCATCGTTCTGTCCTCGCCGGTTGATGACAC
TCTTGACACCAATTCCTTATGGTGCCTCCTTGCAAGACCCAAAACTATCA
ATGATATGCACGGAAACAATGATGCCGCGCAACTTGTCGACGAGTGGTTT
TCATCCCATTTGAAAACTGCAAGCACGTCAAGTGTCTTGTTTGTCGAAGG
GCCTTGCGGGAGTGGAAAGAGTCTGGCGGTGAATCTAGCAGCCCAATCCC
ACGGTTTTCGAACCATTATGGCGTTTGCCAGTGAATCTCGATCCATGGCA
CGGTTTGACGCACACGTGCGACAAGCCACGGCGTTTCAAAACTTTGGGGT
TGTGGTTCTTGACGAGTTTGAATCATTCGCAGAGGATCACGCAGGACTCG
ACAACGTGACCCGTTTCATCAATACGTTCAGTGCCAGGCCCGCATCATCC
CCCCGAGTTCTACTGGTGTGCATTTCAAACGAGGCGTCGGATGCATTTAG
TAGAATCATTGACAGGTCTACCTTTGTGCAATTTGATCCGCTTTCGATAT
CCGATACCCATGGGGTACTGAAGCATGCCCATCGTGAGTGCCCCACAACC
GTCGCCCCGATGGATCTGTACCTGTTTGCAAGTCAAGTGACCGGGGATGC
ACGGCAGGCAATCAATCAGTTTCAGATTGCGTTT
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