mRNA_P-wetherbeei_contig20377.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20377.4.1
Unique NamemRNA_P-wetherbeei_contig20377.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A6L5FLE1_9HYPH (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FLE1_9HYPH)

HSP 1 Score: 301 bits (770), Expect = 2.160e-99
Identity = 164/227 (72.25%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            M VLAIDTAL ACSAAVLDT RG +V  ESLPMVRG AE L+PLIARVM +A ++FA LDR+AVT GPGSFTGLRVGISAARGIA+ AGKPA GL+TLA+FAAPHIAADD+ PV  AIDARHEHVYLQVFGP GRTLV+ RIA + +A+R  AT  AR+ GTAA L+AAAWP  +P P L++ R  PDI WVARLGAAA  + G P+PLYLRAPD QPQ AARL RR
Sbjct:    1 MLVLAIDTALAACSAAVLDTGRGAIVGRESLPMVRGQAEVLMPLIARVMAQAGVDFATLDRVAVTVGPGSFTGLRVGISAARGIALAAGKPAVGLSTLASFAAPHIAADDTEPVVAAIDARHEHVYLQVFGPEGRTLVSARIAPLREAIRAAATGAARVTGTAAELIAAAWPPGQPPPALIDARACPDIDWVARLGAAASVSQGPPRPLYLRAPDTQPQDAARLPRR 227          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A6N7GRJ2_9HYPH (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GRJ2_9HYPH)

HSP 1 Score: 299 bits (765), Expect = 1.240e-98
Identity = 166/227 (73.13%), Postives = 184/227 (81.06%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MRVLAIDTAL ACSAAVLDT    V ASE+LPM RGHAEA++PLIARVM +A +EFA LDRIAVT+GPGSFTGLRVGISAARGIA+ AGKPA GL+TLA +AAPHIA +D   V V IDARHEHVYLQVFG GG+T+V PRIA + +AVR   T PARIVG+ A LV A WP +EP P LVEQ GAPDI W+ARLGAAA    G PKPLYLRAPDAQPQ A+RL RR
Sbjct:    1 MRVLAIDTALAACSAAVLDTRYVAVAASETLPMTRGHAEAIMPLIARVMDQAGVEFANLDRIAVTTGPGSFTGLRVGISAARGIALAAGKPAVGLSTLAGYAAPHIADNDDSAVVVVIDARHEHVYLQVFGIGGKTVVPPRIAPLREAVRAATTGPARIVGSGAELVVAQWPKSEPPPVLVEQLGAPDIGWIARLGAAAAEGHGPPKPLYLRAPDAQPQDASRLPRR 227          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A345ZZ25_9HYPH (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZZ25_9HYPH)

HSP 1 Score: 295 bits (756), Expect = 2.980e-97
Identity = 166/228 (72.81%), Postives = 187/228 (82.02%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPA-RIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MRVLAIDTALEACSAAVLDT +G +VA E +PM RGHAEAL+PLI RVM  A + F ELDR+AVT GPGSFTGLRVGI+AARGIA+ AGKPA GL+TLAA+A P IAADD+IPV  AIDARHE VYLQVFGPGGRTLVAPRIA + +AVR  A   A RIVGTAA L+AAAWPA E  P+ VEQ+GAPDI WVA++GAA   T  AP+PLYL+APDAQPQ A +L RR
Sbjct:    1 MRVLAIDTALEACSAAVLDTEQGGIVAHEQMPMQRGHAEALMPLIKRVMDHAGLAFTELDRVAVTIGPGSFTGLRVGIAAARGIALAAGKPAVGLSTLAAYATPLIAADDTIPVVAAIDARHEQVYLQVFGPGGRTLVAPRIAPLREAVRAAANSGAPRIVGTAAELIAAAWPADERKPRAVEQKGAPDIDWVAQVGAAVADTGVAPRPLYLKAPDAQPQEATQLSRR 228          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A1Q4D9Z3_9HYPH (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4D9Z3_9HYPH)

HSP 1 Score: 293 bits (750), Expect = 2.340e-96
Identity = 160/227 (70.48%), Postives = 187/227 (82.38%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MR+LAIDTALE+CSAAVLDT R   +A E  PM+RGHAEAL+PLIARVM  A +EF E+DRIAVT GPGSFTGLRVGI+AARGIA+ +GKPA GL+TLAA+AAP IAAD ++PV  AIDARH+HVYLQVFG GGRTLV PRI+ + +AVRV A+  AR++GT AR++A+AWP AE  P LV+ R AP+I WVARLGAAA  T   PKPLYLRAPDAQPQ AA+L RR
Sbjct:    1 MRILAIDTALESCSAAVLDTARTTALAVEQEPMLRGHAEALMPLIARVMDRAQLEFKEIDRIAVTVGPGSFTGLRVGIAAARGIALASGKPAIGLSTLAAYAAPLIAADKTLPVVAAIDARHDHVYLQVFGAGGRTLVPPRISPLREAVRVAASAGARVIGTGARMMASAWPTAEKPPSLVDDRRAPEIEWVARLGAAATDTQTPPKPLYLRAPDAQPQDAAQLARR 227          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A537NP03_9PROT (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NP03_9PROT)

HSP 1 Score: 290 bits (741), Expect = 5.420e-95
Identity = 159/227 (70.04%), Postives = 184/227 (81.06%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MRVLAIDTAL ACSAAVLDT RG ++A+E+L M RGHAEAL+PLIAR+M  A +EF+ELDRIAVT+GPGSFTGLRVGI+A+RGIA+  GKPA GL+TLA  AAP IA DDS  V  AIDARHEHVYLQVFG GGRTLV+PRIA + DA+R   T P+RIVG+   L+A AWP    AP LV+ R APDI+W+ARLGAAAG   G+P+PLYLRAPDAQPQ AA L R+
Sbjct:    1 MRVLAIDTALAACSAAVLDTQRGGIIATETLAMTRGHAEALMPLIARMMDVAQLEFSELDRIAVTTGPGSFTGLRVGIAASRGIALATGKPAIGLSTLAGLAAPLIADDDSTNVVAAIDARHEHVYLQVFGSGGRTLVSPRIAPLRDALRAAVTGPSRIVGSGGSLLAKAWPRGVDAPVLVDDRAAPDISWIARLGAAAGEGYGSPRPLYLRAPDAQPQDAAHLPRK 227          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A1Q7B711_9PROT (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7B711_9PROT)

HSP 1 Score: 289 bits (739), Expect = 1.050e-94
Identity = 164/227 (72.25%), Postives = 182/227 (80.18%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MRVLAIDTALEACSAAVLDT+ G + ASE++ M RGHAEAL+PLIARVM  A IEF +LDRIAVT+GPGSFTGLRVGISAARGIA+ AGK A GL+TLA FAAP IA DDS  V  AIDARH+H+YLQVFG  GRTLV PR A++ DA R   T PARI+G+AA+ +AAAW      P LVEQRGAPDI W+ARLGAAA    G PKPLYLRAPDAQPQ AARL RR
Sbjct:    1 MRVLAIDTALEACSAAVLDTSGG-ITASETVVMTRGHAEALMPLIARVMIRAGIEFGDLDRIAVTTGPGSFTGLRVGISAARGIALAAGKSAIGLSTLAGFAAPLIADDDSTQVVAAIDARHDHIYLQVFGVNGRTLVGPRTATVRDAARAAMTAPARIIGSAAKKLAAAWAKGAEPPLLVEQRGAPDIDWIARLGAAAAEAHGPPKPLYLRAPDAQPQNAARLPRR 226          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A537S4T5_9PROT (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S4T5_9PROT)

HSP 1 Score: 288 bits (737), Expect = 2.120e-94
Identity = 162/227 (71.37%), Postives = 180/227 (79.30%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MRVLAIDTALEACSAAV DT+ G V+ASE+  M RGHAE L+PLIARVM E   EFA+LDRIAVT+GPGSFTGLRVGISAARGIA+ AGKPA GL+TLAAFAAP IAADD   V   IDARHEH+YLQVFG  GRTLV PR+A++ DA R   T PARI+G+ A+ VAAAWP     P  +EQRGAPDI W+ARLGAAA    GAPKPLYLR PDA+PQ  ARL RR
Sbjct:    1 MRVLAIDTALEACSAAVFDTSSG-VLASETRGMARGHAEHLMPLIARVMNEGGFEFADLDRIAVTTGPGSFTGLRVGISAARGIALVAGKPAIGLSTLAAFAAPLIAADDGTQVVATIDARHEHIYLQVFGVNGRTLVPPRMATVRDATRAAMTAPARIIGSGAKKVAAAWPKGADPPLSIEQRGAPDIEWIARLGAAAPEAHGAPKPLYLREPDARPQDGARLPRR 226          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A7V4UHE0_9PLAN (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V4UHE0_9PLAN)

HSP 1 Score: 276 bits (706), Expect = 1.020e-89
Identity = 159/227 (70.04%), Postives = 179/227 (78.85%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            M VLAIDTAL ACS AVLDT RG +   ES PM RG AE L+P++ARVMR A ++FA LDRIAVT GPGSFTGLRVGI+AARGIA+ AGKPA GL+TLAA+AAPHIAADD+ PV  AIDARH  VYLQVFGP GRTLVAPR+AS+A+AVR  A   +RIVG AA L+AA+ P A P P  ++ R APDI WVA+LGAAA      PKPLYLRAPDAQPQ AARL RR
Sbjct:    1 MLVLAIDTALAACSVAVLDTGRGGIAGRESEPMARGQAEVLMPMVARVMRAAAVDFAALDRIAVTVGPGSFTGLRVGIAAARGIALAAGKPAVGLSTLAAYAAPHIAADDTAPVVAAIDARHSQVYLQVFGPAGRTLVAPRLASLAEAVRA-ADGASRIVGNAAALIAASSPPARP-PAAIDARAAPDIDWVAQLGAAAPEGQAPPKPLYLRAPDAQPQDAARLPRR 225          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A140GUQ7_9HYPH (Peptidase M22, glycoprotease n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GUQ7_9HYPH)

HSP 1 Score: 275 bits (703), Expect = 3.120e-89
Identity = 152/228 (66.67%), Postives = 180/228 (78.95%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRVTATRPA-RIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MR+LAIDTALEAC+AAV+DT RG + A+ESLP+ RGHAEAL+PLIARVM +A + F  LDRI VT+GPGSFTGLRVGI+AARGIA++AGKPA+G+TTLAAFAAPHIA ++S  + VAIDARH+HVY+QVF  GGR ++ PRIAS  DA R   T  A R+ GT A L+AAAWP+ +  P +V+ R APDI WV RL  AA      PKPLYLRAPDAQPQ AARL RR
Sbjct:    1 MRILAIDTALEACAAAVIDTERGRM-ATESLPLERGHAEALMPLIARVMAQAEMPFTALDRIGVTTGPGSFTGLRVGIAAARGIALSAGKPAFGVTTLAAFAAPHIATENSAGITVAIDARHQHVYMQVFAQGGRAVIPPRIASAEDAARAARTHGAVRLTGTGAALIAAAWPSRDTPPVIVDDRRAPDIVWVGRLAIAAKDNASPPKPLYLRAPDAQPQAAARLPRR 227          
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Match: A0A833GFW4_9HYPH (tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GFW4_9HYPH)

HSP 1 Score: 271 bits (693), Expect = 1.020e-87
Identity = 154/228 (67.54%), Postives = 183/228 (80.26%), Query Frame = 1
Query:    1 MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMREAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAAFAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVRV-TATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAGGTPGAPKPLYLRAPDAQPQGAARLQRR 681
            MRVLAIDTALEAC+AA+LDTTRG ++AS SLPM RGHAEAL+P+I  VMR++ + F++LDRIAVT+GPGSFTGLRVGI+AARGI + AGKP  GLTTLAA AAP IAA+D +PV  AIDARHEHVY+Q+FGP GRT+++ RI  +ADAVR  +A    R++G+ A L+AAAWP A PA   V+ R A DI WVARLGAAA     APKP YLRAPDAQPQ AA+L RR
Sbjct:    1 MRVLAIDTALEACAAALLDTTRGALLASVSLPMTRGHAEALMPVIETVMRDSGLAFSDLDRIAVTTGPGSFTGLRVGIAAARGIGLAAGKPVVGLTTLAALAAPLIAANDRLPVTAAIDARHEHVYVQIFGPAGRTVLSARIIPVADAVRAASAMGMMRLIGSGAGLMAAAWPPA-PALHAVDDRRAADIDWVARLGAAADPKQSAPKPFYLRAPDAQPQDAAQLPRR 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20377.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FLE1_9HYPH2.160e-9972.25tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A6N7GRJ2_9HYPH1.240e-9873.13tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A345ZZ25_9HYPH2.980e-9772.81tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A1Q4D9Z3_9HYPH2.340e-9670.48tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A537NP03_9PROT5.420e-9570.04tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A1Q7B711_9PROT1.050e-9472.25tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A537S4T5_9PROT2.120e-9471.37tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A7V4UHE0_9PLAN1.020e-8970.04tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A140GUQ7_9HYPH3.120e-8966.67Peptidase M22, glycoprotease n=1 Tax=Rhodoplanes s... [more]
A0A833GFW4_9HYPH1.020e-8767.54tRNA (Adenosine(37)-N6)-threonylcarbamoyltransfera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20377contigP-wetherbeei_contig20377:264..1228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1187851.A33M_4116
Preferred nameyeaZ
PFAMsPeptidase_M22
Model size965
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00070,RC00416
KEGG koko:K01409,ko:K14742
KEGG ReactionR10648
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.61e-89
EggNOG OGsCOG1214@1|root,COG1214@2|Bacteria,1MXPH@1224|Proteobacteria,2TTM2@28211|Alphaproteobacteria,3FDCB@34008|Rhodovulum
EC2.3.1.234
DescriptionGlycoprotease family
Cds size684
COG categoryO
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.9366558-CDS-P-wetherbeei_contig20377:263..9471683186197.9366558-CDS-P-wetherbeei_contig20377:263..947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20377 264..947 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.9476814-UTR-P-wetherbeei_contig20377:947..12281683186197.9476814-UTR-P-wetherbeei_contig20377:947..1228Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20377 948..1228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20377.4.1prot_P-wetherbeei_contig20377.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20377 264..947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20377.4.1

>prot_P-wetherbeei_contig20377.4.1 ID=prot_P-wetherbeei_contig20377.4.1|Name=mRNA_P-wetherbeei_contig20377.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
MRVLAIDTALEACSAAVLDTTRGEVVASESLPMVRGHAEALIPLIARVMR
EAMIEFAELDRIAVTSGPGSFTGLRVGISAARGIAMTAGKPAYGLTTLAA
FAAPHIAADDSIPVAVAIDARHEHVYLQVFGPGGRTLVAPRIASIADAVR
VTATRPARIVGTAARLVAAAWPAAEPAPQLVEQRGAPDIAWVARLGAAAG
GTPGAPKPLYLRAPDAQPQGAARLQRR*
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mRNA from alignment at P-wetherbeei_contig20377:264..1228+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20377.4.1 ID=mRNA_P-wetherbeei_contig20377.4.1|Name=mRNA_P-wetherbeei_contig20377.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=965bp|location=Sequence derived from alignment at P-wetherbeei_contig20377:264..1228+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTCCTTGCCATCGACACTGCGCTTGAGGCCTGCTCCGCCGCCGT GCTCGACACGACGCGTGGCGAGGTGGTCGCGAGCGAATCGCTGCCGATGG TGCGCGGTCACGCCGAAGCCCTGATCCCGCTGATCGCCCGCGTGATGCGC GAGGCGATGATCGAGTTCGCAGAGCTCGACCGCATCGCCGTGACCAGCGG ACCCGGCAGCTTCACCGGATTGCGCGTCGGGATTTCAGCGGCGCGCGGCA TCGCAATGACCGCGGGCAAGCCGGCCTACGGGCTGACGACGCTCGCCGCC TTCGCCGCGCCGCACATCGCCGCCGACGACAGCATTCCGGTCGCCGTCGC CATCGATGCCCGGCACGAGCATGTGTACCTGCAGGTGTTCGGTCCCGGCG GGCGCACGTTGGTGGCGCCGCGCATCGCCAGCATCGCCGACGCGGTGCGC GTCACCGCCACCAGGCCGGCCCGCATCGTCGGCACGGCGGCGCGCCTCGT CGCCGCCGCATGGCCGGCCGCCGAGCCGGCGCCGCAACTCGTCGAGCAGC GCGGCGCCCCCGACATCGCCTGGGTGGCGCGTCTCGGCGCCGCGGCCGGC GGCACGCCGGGCGCGCCCAAGCCGCTCTACCTGCGCGCGCCCGACGCCCA GCCGCAAGGCGCCGCGCGGTTGCAGCGCCGATGATCGCGATGGTCACCCG CCTGTTCGCGCGGAGCGAGCCGGCCATCTCCGACGCGAGCCCGCGCGACG CCGCGGCAATCGCCGCGCTGCACGGGGCCTCGTTCCGGCGCGGCTGGAGC GACGGCGAGTTCGAACGGCTGCTGCTCGAAAGCAACGTCGTCGCCCACCG CATCACGCTCGGCCGCAAGCTCGCGGGCTTCATCCTGTCGCGGCTCGCCG CCGGCGAAGCGGAGATCCTCTCGGTCGCCGTGACGGCGTCGAAGCGCGGC CGCGGACTGGCGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20377:264..1228+

>mRNA_P-wetherbeei_contig20377.4.1 ID=mRNA_P-wetherbeei_contig20377.4.1|Name=mRNA_P-wetherbeei_contig20377.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig20377:264..1228+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTCCTTGCCATCGACACTGCGCTTGAGGCCTGCTCCGCCGCCGT
GCTCGACACGACGCGTGGCGAGGTGGTCGCGAGCGAATCGCTGCCGATGG
TGCGCGGTCACGCCGAAGCCCTGATCCCGCTGATCGCCCGCGTGATGCGC
GAGGCGATGATCGAGTTCGCAGAGCTCGACCGCATCGCCGTGACCAGCGG
ACCCGGCAGCTTCACCGGATTGCGCGTCGGGATTTCAGCGGCGCGCGGCA
TCGCAATGACCGCGGGCAAGCCGGCCTACGGGCTGACGACGCTCGCCGCC
TTCGCCGCGCCGCACATCGCCGCCGACGACAGCATTCCGGTCGCCGTCGC
CATCGATGCCCGGCACGAGCATGTGTACCTGCAGGTGTTCGGTCCCGGCG
GGCGCACGTTGGTGGCGCCGCGCATCGCCAGCATCGCCGACGCGGTGCGC
GTCACCGCCACCAGGCCGGCCCGCATCGTCGGCACGGCGGCGCGCCTCGT
CGCCGCCGCATGGCCGGCCGCCGAGCCGGCGCCGCAACTCGTCGAGCAGC
GCGGCGCCCCCGACATCGCCTGGGTGGCGCGTCTCGGCGCCGCGGCCGGC
GGCACGCCGGGCGCGCCCAAGCCGCTCTACCTGCGCGCGCCCGACGCCCA
GCCGCAAGGCGCCGCGCGGTTGCAGCGCCGATGA
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