mRNA_P-wetherbeei_contig2035.1.6 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2035.1.6
Unique NamemRNA_P-wetherbeei_contig2035.1.6
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2035.1.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2035contigP-wetherbeei_contig2035:1004..2280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5911.EAS02352
PFAMsEF-hand_7,EF-hand_8
Model size1022
Max annot lvl5878|Ciliophora
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000625
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,3ZB5D@5878|Ciliophora
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001665.1
Descriptionprotein serine/threonine kinase activity
Cds size525
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.113371-UTR-P-wetherbeei_contig2035:1003..13441683186197.113371-UTR-P-wetherbeei_contig2035:1003..1344Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2035 1004..1344 -
1683186197.1441443-UTR-P-wetherbeei_contig2035:2124..22801683186197.1441443-UTR-P-wetherbeei_contig2035:2124..2280Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2035 2125..2280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.1250393-CDS-P-wetherbeei_contig2035:1344..14761683186197.1250393-CDS-P-wetherbeei_contig2035:1344..1476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2035 1345..1476 -
1683186197.134596-CDS-P-wetherbeei_contig2035:1731..21241683186197.134596-CDS-P-wetherbeei_contig2035:1731..2124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2035 1732..2124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2035.1.6prot_P-wetherbeei_contig2035.1.6Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2035 1345..2124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2035.1.6

>prot_P-wetherbeei_contig2035.1.6 ID=prot_P-wetherbeei_contig2035.1.6|Name=mRNA_P-wetherbeei_contig2035.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MQPVSLVFCTPPGPFYRELKAQHPDLSSRCGFTYDAACDFQTENEKSQVA
LLFPFLHCYPEWSKVNGCKTLMKTGACSFWQKQAADLATTLQGKVMERSH
DAETPQEVLTKSIKFFNMAGDGNIKKNEFVETLQHYGLWLDDAAYDHLFE
HFDPERKGYVSAKKFVDAMFPPGS*
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mRNA from alignment at P-wetherbeei_contig2035:1004..2280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2035.1.6 ID=mRNA_P-wetherbeei_contig2035.1.6|Name=mRNA_P-wetherbeei_contig2035.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1277bp|location=Sequence derived from alignment at P-wetherbeei_contig2035:1004..2280- (Phaeothamnion wetherbeei SAG_119_79)
TTCATCCGCGGCAGCTCCTGCCTTGCGAAGGGTCTTTGCAGGGAAGAGGC
ATAAAACGTTTGAGTTTTTCCTGGATATTCGATGTCAAACACCGGCCAGT
CGGCCAGCTGAAAAATTGATTCGAGTAGGCGCCGTTCCGCTGGTGCCGCT
TTTCTTATGCAGCCCGTTTCGCTCGTCTTCTGTACTCCGCCGGGTCCGTT
TTACAGGGAGCTCAAGGCCCAGCACCCGGATCTGTCTTCACGGTGCGGTT
TCACTTACGATGCTGCTTGCGATTTTCAAACGGAAAACGAAAAGTCTCAG
GTGGCTCTTCTGTTTCCTTTTCTCCACTGTTATCCGGAATGGTCGAAGGT
TAATGGCTGCAAAACATTAATGAAGACCGGCGCCTGTTCTTTTTGGCAAA
AACAGGCGGCCGATCTGGCGACGACGCTGCAGGGGAAAGTAATGGAGCGA
AGCCACGACGCGGAGACACCGCAGGAGGTGCTCACCAAATCGATAAAGTT
CTTCAACATGGCAGGCGACGGCAACATCAAGAAGAACGAGTTTGTCGAGG
TAACAAAGAAATCGGAGGAGCGGCAGGCAGGCAGACTGCCGGGGAAGGGC
GATGATATGAGAGATGGTTTCAGCCAACGATACCCTGGCTGCCGGGCTTC
CTGAGCTCGAGCCCACGTTGAACTGCCTGCGCGGCTGGCTTACCACGTGA
CGTGCTGTATTTCCTGCGGAACGCAGTTCTTTCTGCACATCCCCCTTCTT
CCTCCTGAACGCACACTTTCCTTCCTCTGCCCCACTCATTCCCCCCGCCA
CCAGACACTGCAGCACTACGGGCTGTGGCTGGACGATGCGGCGTACGACC
ACCTCTTCGAGCACTTCGACCCCGAGAGGAAGGGCTACGTCTCGGCCAAG
AAATTCGTGGATGCCATGTTTCCGCCCGGCTCGTGAGGCGCCGTGCGTGC
CTGTCGTGTCGACGCCAAAGCGGCTTGCGAGGTTGCGGTGATTTAGTTCG
TTCGATCATGTGGCTGGGAGTTTGTGTGCGGGGCGCAGGGAACGTGCGCG
GAACTAGTTTTTGCGGGTGGTGTCCTGGTAGTCTGTTGTCTATGGCTGGT
ATATCAGAACGAGAATGAATCCAGGAGTTCTTGCAAGAATCGGAGTAAGT
ACTGACAAGAGGACGGTAAATAATCCAGGAAGAAGACGCATCAATTTGGA
AAAAGAGGGCTGGAGCTTCGCATTGATTGCAGACGTTCTGCAAGTGCTGT
TTGAAGTGAAGTGAACGGAACAACACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2035:1004..2280-

>mRNA_P-wetherbeei_contig2035.1.6 ID=mRNA_P-wetherbeei_contig2035.1.6|Name=mRNA_P-wetherbeei_contig2035.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig2035:1004..2280- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCCCGTTTCGCTCGTCTTCTGTACTCCGCCGGGTCCGTTTTACAG
GGAGCTCAAGGCCCAGCACCCGGATCTGTCTTCACGGTGCGGTTTCACTT
ACGATGCTGCTTGCGATTTTCAAACGGAAAACGAAAAGTCTCAGGTGGCT
CTTCTGTTTCCTTTTCTCCACTGTTATCCGGAATGGTCGAAGGTTAATGG
CTGCAAAACATTAATGAAGACCGGCGCCTGTTCTTTTTGGCAAAAACAGG
CGGCCGATCTGGCGACGACGCTGCAGGGGAAAGTAATGGAGCGAAGCCAC
GACGCGGAGACACCGCAGGAGGTGCTCACCAAATCGATAAAGTTCTTCAA
CATGGCAGGCGACGGCAACATCAAGAAGAACGAGTTTGTCGAGACACTGC
AGCACTACGGGCTGTGGCTGGACGATGCGGCGTACGACCACCTCTTCGAG
CACTTCGACCCCGAGAGGAAGGGCTACGTCTCGGCCAAGAAATTCGTGGA
TGCCATGTTTCCGCCCGGCTCGTGA
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