mRNA_P-wetherbeei_contig20302.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20302.1.1
Unique NamemRNA_P-wetherbeei_contig20302.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.640e-24
Identity = 57/109 (52.29%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    4 PPNKVAGQRS--------------IGRYSLAITVMA-FLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDRH 285
            P   VAG RS              + R  + + V A FL+YST STI+FQTFACD L+ELGT++LRADYS+EC TP H  Y+ +A  MI +YPIGIPLLYA +L + RH
Sbjct: 1336 PATVVAGSRSGHGIMMSEARQMSVVKRRHVGVLVTASFLVYSTVSTIVFQTFACDTLDELGTTFLRADYSLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFRHRH 1444          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.700e-23
Identity = 47/92 (51.09%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    7 PNKVAGQRSIGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDR 282
            P++   +R   +Y+     MAF +YST ST+IFQTF+CD LE++G SYLRADY I+C++  H A+KL+A  MI +YPIGIP+ +AV+L + R
Sbjct:   19 PDQGVMRRVQDKYTTVALTMAFFLYSTVSTVIFQTFSCDELEDVGKSYLRADYGIDCDSDRHKAFKLYAGLMILVYPIGIPVAFAVMLWRKR 110          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.890e-23
Identity = 46/81 (56.79%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   40 RYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDR 282
            +Y+     MAF +YST ST+IFQTF+CD LE+L  SYLRADY+I+C++  H A+KL+A FMI +YPIGIP+ +AV+L + R
Sbjct:  180 KYTTVALTMAFFLYSTVSTVIFQTFSCDELEDLDKSYLRADYAIDCDSDRHKAFKLYAGFMILVYPIGIPVAFAVMLWRKR 260          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.370e-22
Identity = 45/88 (51.14%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   19 AGQRSIGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDR 282
            A QR++ R++ A  ++ FL++S+ ST +F T++CD+LE+LG S LRADYSI C+ P H  Y+ +A+ MI LYPIG+P+L+AV+L K R
Sbjct: 1306 ARQRAVVRHASAALLILFLVFSSVSTAVFSTYSCDYLEDLGVSLLRADYSISCDHPDHTFYEAYAALMILLYPIGVPMLFAVLLLKRR 1393          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.430e-22
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   16 VAGQRSIGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDRH 285
            V  +R +G     +   +FL+YST STI+FQ FACD L+E G ++LRADYS+EC TP H  Y+ +A  MI +YPIGIPLLYA +L + RH
Sbjct: 1654 VVKRRHVG----VLVTASFLVYSTVSTIVFQAFACDTLDEQGKTFLRADYSLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFQHRH 1739          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: A0A836C6Y5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Y5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.910e-22
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   55 ITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDR 282
            + V  F+I+S  ST++FQTFAC+  E  G S+LRADYSI C TP H AY  +A FMIF+YPIGIP+LY  VL + R
Sbjct:  106 LLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHR 181          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.000e-22
Identity = 45/88 (51.14%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   19 AGQRSIGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDR 282
            A QR++ R++ A  ++ FL++S+ ST +F TF+CD++E+L  S LRADYSI C+ P H  YK +A+ MI LYPIG+P+L+AV+L K R
Sbjct: 1312 ARQRAVVRHASAALLILFLVFSSVSTTVFSTFSCDYVEDLDVSLLRADYSISCDHPDHTFYKAYAALMILLYPIGVPMLFAVLLLKRR 1399          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.820e-21
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 GPPNKVAGQRSIGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDRHGSTARGR 306
            G  + VA + +  R+  A  ++ FL++++ ST++F+TFACD     G SYLRADYS+ CNT TH  YK++A  MI +YPIGIPLLYA +L  +R     R R
Sbjct:  709 GSASVVARKAAWSRHMAAGLLLTFLVFTSTSTVVFKTFACDDEAVEGESYLRADYSLSCNTATHTWYKVYAGVMIVVYPIGIPLLYAFILWINRESLNPRPR 810          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: A0A835YUM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.160e-21
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   34 IGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDRHG 288
            + R++  +    FLI+S  ST +FQTFACD L+  G  YLRADY++ C T  H AY ++ASFM+ +YP+GIP LYA +L + R G
Sbjct: 1023 VSRHATLLLAFTFLIFSFASTTVFQTFACDCLDGTGECYLRADYALSCGTARHRAYVIYASFMVLVYPVGIPALYAYMLRRHRKG 1107          
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.190e-21
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 GPPNKVAGQRSIGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSYLRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDRHGSTAR 300
            G  + VA + +  R+  A  ++ FL++++ ST++F+TFACD     G SYLRADYS+ CNT TH  YK++A  MI +YPIGIPLLYA +L  +R     R
Sbjct: 1214 GSASVVARKAAWSRHMAAGLLLTFLVFTSTSTVVFKTFACDDQAVEGDSYLRADYSLSCNTDTHTWYKVYAGIMIVVYPIGIPLLYAFILWINRDSLNPR 1313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20302.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRF9_ECTSI1.640e-2452.29Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D8LRF6_ECTSI1.700e-2351.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU27_9PHAE1.890e-2356.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT7_ECTSI2.370e-2251.14Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JU65_9PHAE4.430e-2253.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C6Y5_9STRA4.910e-2257.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5JUJ2_9PHAE6.000e-2251.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK8_9PHAE3.820e-2147.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YUM0_9STRA7.160e-2149.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FRG6_ECTSI7.190e-2147.00Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20302contigP-wetherbeei_contig20302:516..1042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRF9
PFAMsBeta_helix,Chlam_PMP
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.69e-25
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.237266-CDS-P-wetherbeei_contig20302:515..6921683186196.237266-CDS-P-wetherbeei_contig20302:515..692Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20302 516..692 -
1683186196.2473104-CDS-P-wetherbeei_contig20302:907..10421683186196.2473104-CDS-P-wetherbeei_contig20302:907..1042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20302 908..1042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20302.1.1prot_P-wetherbeei_contig20302.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20302 516..1042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20302.1.1

>prot_P-wetherbeei_contig20302.1.1 ID=prot_P-wetherbeei_contig20302.1.1|Name=mRNA_P-wetherbeei_contig20302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
GPPNKVAGQRSIGRYSLAITVMAFLIYSTESTIIFQTFACDHLEELGTSY
LRADYSIECNTPTHHAYKLFASFMIFLYPIGIPLLYAVVLSKDRHGSTAR
GRSD
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mRNA from alignment at P-wetherbeei_contig20302:516..1042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20302.1.1 ID=mRNA_P-wetherbeei_contig20302.1.1|Name=mRNA_P-wetherbeei_contig20302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=527bp|location=Sequence derived from alignment at P-wetherbeei_contig20302:516..1042- (Phaeothamnion wetherbeei SAG_119_79)
GGACCACCGAACAAGGTGGCCGGGCAGCGCTCCATCGGCAGGTACAGTCT CGCCATTACGGTCATGGCCTTCCTGATTTACAGCACGGAGTCGACCATCA TCTTCCAGACGTTTGCCTGCGACCACCTTGAAGAGGTAAGAACGACAAGG GACGAACAACGAATCCGTTGGGCATTGCGGCAAGCCAATAGAAGCGGACC GGGCGGCAGCGGCCAGTAGTTACGACCGGGAGCGCCAGAGGCAGATTGAA AGTCCTGTTTTGTGCTGATGCCGCCGATGGCGATAGCTGCTACTGTTATC CTCTTGTCATCTCTCTTCATCTTTCCCGCTCTGCGTCGCTGTCTCCGCAG CTCGGCACCAGCTACCTGAGGGCGGACTACAGCATCGAGTGCAACACACC GACCCACCACGCCTACAAGTTATTCGCTTCCTTCATGATCTTCCTGTACC CGATCGGCATCCCTCTTTTGTACGCTGTGGTGCTTTCGAAGGACCGCCAC GGGAGCACGGCACGCGGGCGGTCGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20302:516..1042-

>mRNA_P-wetherbeei_contig20302.1.1 ID=mRNA_P-wetherbeei_contig20302.1.1|Name=mRNA_P-wetherbeei_contig20302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig20302:516..1042- (Phaeothamnion wetherbeei SAG_119_79)
GGACCACCGAACAAGGTGGCCGGGCAGCGCTCCATCGGCAGGTACAGTCT
CGCCATTACGGTCATGGCCTTCCTGATTTACAGCACGGAGTCGACCATCA
TCTTCCAGACGTTTGCCTGCGACCACCTTGAAGAGCTCGGCACCAGCTAC
CTGAGGGCGGACTACAGCATCGAGTGCAACACACCGACCCACCACGCCTA
CAAGTTATTCGCTTCCTTCATGATCTTCCTGTACCCGATCGGCATCCCTC
TTTTGTACGCTGTGGTGCTTTCGAAGGACCGCCACGGGAGCACGGCACGC
GGGCGGTCGGAC
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