mRNA_P-wetherbeei_contig20297.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: UPI001E3AFD8D (ABC transporter permease n=1 Tax=Leptospira sp. severe_002 TaxID=2838237 RepID=UPI001E3AFD8D) HSP 1 Score: 520 bits (1338), Expect = 8.370e-186 Identity = 259/275 (94.18%), Postives = 267/275 (97.09%), Query Frame = 1
Query: 1 MSDVPANSVQALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
MSDVPANSVQALIDSPA P+ESRLH IWRNAFPFI VGLIWE VARAG+FPPKLFPTIETIAAAFWRLTMNGILLHHAFDTI RLLAGFALAAI+GV IGILMGRSRRAEDICLP+VSMLAPIPGIAWAPLFLLWFGLGN+PAILLVAFVSLFPIIFNTWTGVKAVKEIWVR+AQAMGADDRR+FVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVML+GVFVIGVLGLALEK VFQRLERFTV RWGMMT
Sbjct: 4 MSDVPANSVQALIDSPA-PQESRLHMIWRNAFPFIAVGLIWEAVARAGVFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTIWRLLAGFALAAIVGVAIGILMGRSRRAEDICLPLVSMLAPIPGIAWAPLFLLWFGLGNRPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRSAQAMGADDRRLFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLSGVFVIGVLGLALEKLVFQRLERFTVQRWGMMT 277
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A537L377_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L377_9PROT) HSP 1 Score: 430 bits (1106), Expect = 8.010e-150 Identity = 208/264 (78.79%), Postives = 236/264 (89.39%), Query Frame = 1
Query: 31 ALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
A++ +PAA RE+R +WRNAFPF+ +G IWETVARAG+FPP+LFPT+ETIAAAFWRLT+NGIL HHA DT++RL AGFALAAI GV IGI MGRSR AEDI LP+VS+ APIPG+A+APLFLLWFGLGN A+LLV FVS FP++FNTWTGVKAVKEIWVR+AQAMGAD+RR+F VI+PGALPYILTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLN DVMLAGV VI ++GLALEK VFQRLE FTV+RWGMM
Sbjct: 54 AILATPAAQREARWRVVWRNAFPFLALGAIWETVARAGVFPPRLFPTLETIAAAFWRLTLNGILPHHALDTMVRLGAGFALAAIAGVAIGIAMGRSRTAEDIFLPLVSIGAPIPGLAYAPLFLLWFGLGNTSAVLLVGFVSAFPVVFNTWTGVKAVKEIWVRSAQAMGADNRRLFRYVILPGALPYILTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNMDVMLAGVAVIAIIGLALEKLVFQRLENFTVVRWGMM 317
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A127ER36_9HYPH (Taurine ABC transporter permease n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ER36_9HYPH) HSP 1 Score: 409 bits (1050), Expect = 5.030e-142 Identity = 203/253 (80.24%), Postives = 223/253 (88.14%), Query Frame = 1
Query: 64 SRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
+R RN FPF+VV +WE VARAG+FPPKLFP++ TIA F RLT NGIL HH FDTILRLLAGFALAAI GVV+GILMGRSRR EDI LP+VS+ APIPG+A+APLFLLWFGLGN A+LLVAFVS FPIIFNTWTGVKAVKEIWVR+A AMGADDRR+FV VIVPGALPYILTGLRLGLAQAWR LVG+EMLA+VPWGLGWMIFGAREFLNTDVMLAGV VI VLGLALEK VFQ++E +TVMRWGM+
Sbjct: 18 ARWRVFARNVFPFVVVLGLWEIVARAGVFPPKLFPSLVTIAETFVRLTANGILPHHTFDTILRLLAGFALAAIAGVVLGILMGRSRRIEDIALPLVSIGAPIPGLAYAPLFLLWFGLGNTSAVLLVAFVSAFPIIFNTWTGVKAVKEIWVRSALAMGADDRRLFVKVIVPGALPYILTGLRLGLAQAWRILVGIEMLAAVPWGLGWMIFGAREFLNTDVMLAGVVVIAVLGLALEKLVFQKIEEYTVMRWGMV 270
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A1Q7BPW8_9PROT (ABC transmembrane type-1 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BPW8_9PROT) HSP 1 Score: 404 bits (1038), Expect = 4.180e-140 Identity = 202/277 (72.92%), Postives = 232/277 (83.75%), Query Frame = 1
Query: 1 MSDV-PANSVQALIDSPAAPR-ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
MSD+ PA S L +A R ESR I R AFPF+VVG+ WE AR G+FP KLFP +E +AAAF RLT NG+L HH DT++RLLAGFALAA G+ IG MGRSRRAED+ LP++S+ APIPG+A+APLFLLWFGLGN A+LLVAFVS FPI+FNTWTGVKAVKEIWVR+AQAMGADDRR+ +VI+PGALPY+LTGLRLGLAQAWR LVGVEMLA+V WGLGWMIFGAREFLNTDVMLAGV VIG +GLALEK VFQRLE++TV+RWGMM+
Sbjct: 1 MSDLAPATSASVLTAGTSAQRGESRWRVIARTAFPFLVVGIAWEITARLGVFPRKLFPPLEEVAAAFIRLTANGVLAHHVLDTLVRLLAGFALAAAAGIAIGFAMGRSRRAEDVFLPLISIGAPIPGLAYAPLFLLWFGLGNMTAVLLVAFVSAFPIVFNTWTGVKAVKEIWVRSAQAMGADDRRLLHHVILPGALPYVLTGLRLGLAQAWRILVGVEMLAAVSWGLGWMIFGAREFLNTDVMLAGVAVIGAIGLALEKLVFQRLEQYTVVRWGMMS 277
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A6L5FLC2_9HYPH (ABC transporter permease subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FLC2_9HYPH) HSP 1 Score: 400 bits (1029), Expect = 1.170e-138 Identity = 200/267 (74.91%), Postives = 228/267 (85.39%), Query Frame = 1
Query: 31 ALIDSPAAPR--ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
AL +PAA RL A+ R AFPF VV +WE VA G+F P+LFPT+E + +AF +LT NGILLHHA T++RL+ GFALAAI+GV +GILMGRSRR EDI LP+VS++APIPGIA+APLFLLWFGLGN PA+LLV FV+ FPIIFNTWTGVKAVKEIWVR+AQAMGAD RR+F +VI+PGALPYILTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLNTDVML+GV VI +LGLALEK VFQRLE TV+RWGMMT
Sbjct: 12 ALPSAPAAALVWNDRLRAVLRTAFPFAVVLGLWEIVAHLGIFHPRLFPTVEEVVSAFVQLTANGILLHHAVQTVIRLIGGFALAAIVGVGLGILMGRSRRMEDILLPLVSIMAPIPGIAYAPLFLLWFGLGNVPAVLLVGFVAGFPIIFNTWTGVKAVKEIWVRSAQAMGADSRRLFRHVILPGALPYILTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNTDVMLSGVAVIAILGLALEKFVFQRLENHTVVRWGMMT 278
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A345ZYE2_9HYPH (ABC transporter permease n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZYE2_9HYPH) HSP 1 Score: 400 bits (1027), Expect = 2.040e-138 Identity = 190/252 (75.40%), Postives = 227/252 (90.08%), Query Frame = 1
Query: 70 LHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
L AI RN FPF+VVGL+WE VAR G+FPP+LFPT+E +AA+F RLT++GIL HHA +T++RLL+GFALAAI G VIGILMGRSRRAEDI LP+VS+ APIPG+A+APLFLLWFGLGN A+LLV FVS FP+IFN+WTGVKAVKEIW+R+A A+GADDRR+F +VI+PGALPYILTGLRLGLAQAWR LV VEMLA+VPWGLGW+IFGAREFLNTDVMLAG+ VI ++G+ALEK VFQ++E +TV+RWGM+T
Sbjct: 25 LRAILRNMFPFLVVGLLWEIVARLGVFPPRLFPTLEEVAASFVRLTVSGILPHHAIETVIRLLSGFALAAIAGTVIGILMGRSRRAEDIMLPLVSICAPIPGLAYAPLFLLWFGLGNVSAVLLVGFVSAFPVIFNSWTGVKAVKEIWLRSAVALGADDRRLFTHVILPGALPYILTGLRLGLAQAWRILVAVEMLAAVPWGLGWLIFGAREFLNTDVMLAGIAVIALIGIALEKLVFQKIEDYTVVRWGMVT 276
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A1W6ZV16_9HYPH (ABC transmembrane type-1 domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZV16_9HYPH) HSP 1 Score: 397 bits (1020), Expect = 2.060e-137 Identity = 194/258 (75.19%), Postives = 226/258 (87.60%), Query Frame = 1
Query: 49 AAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
A E+ + RNAFPFIVVG+ WE VAR+G+FP KLFPT+ IA FW LT++GIL HHA +TILRL+AGFALAA +GV+IGI+MGRSRRAED LP+V++LAPIPGIA+APLFLLWFGLGN ILLVAFVS FPI+FNTWTGVKAVKEIW+R+AQAMGA+DRR+F +VI+PGALPYILTGLRLGLAQAWR LVGVEMLA+V WGLGW+IFGAREFLNTDVML GV VIG++GLALEK VFQ+LE +T++RWGMM
Sbjct: 16 AGSAEAWWRPVARNAFPFIVVGIAWEIVARSGMFPRKLFPTLGDIAETFWALTISGILPHHAAETILRLIAGFALAAAVGVLIGIMMGRSRRAEDYTLPLVAILAPIPGIAYAPLFLLWFGLGNFSTILLVAFVSSFPIVFNTWTGVKAVKEIWLRSAQAMGANDRRLFRHVILPGALPYILTGLRLGLAQAWRVLVGVEMLAAVSWGLGWLIFGAREFLNTDVMLCGVAVIGLIGLALEKLVFQKLEDYTLVRWGMM 273
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A6N7GVJ1_9HYPH (ABC transporter permease subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GVJ1_9HYPH) HSP 1 Score: 393 bits (1009), Expect = 1.010e-135 Identity = 191/254 (75.20%), Postives = 220/254 (86.61%), Query Frame = 1
Query: 61 ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
ESRL R AFPF+VVG +WE A AG+FPP+LFPT+E IAAAFWRLT+ GIL H +T+LRL AGF LA +IGVV+GI MGRSRRAED LP+VS+ APIPGIA+APLF+LWFGLGN AILLV FVS FPIIFNTWTGVKAVKEIWVR+AQAMGAD RR+F +VI+PG+LPYI TGLRLGLAQAWR LV VE+LA+VPWGLGW+IFGAREFLNTDVMLAGV VIG++GL LEK +F+RLE++TV+RWGMM
Sbjct: 20 ESRLRVAARIAFPFLVVGAMWEITAHAGVFPPRLFPTLEEIAAAFWRLTVAGILPRHVAETLLRLFAGFVLAGVIGVVVGIAMGRSRRAEDYLLPLVSIAAPIPGIAYAPLFMLWFGLGNLSAILLVGFVSAFPIIFNTWTGVKAVKEIWVRSAQAMGADQRRLFRHVILPGSLPYIFTGLRLGLAQAWRILVVVELLAAVPWGLGWLIFGAREFLNTDVMLAGVAVIGMIGLLLEKLMFERLEQYTVVRWGMM 273
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A537SI67_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SI67_9PROT) HSP 1 Score: 395 bits (1015), Expect = 3.030e-135 Identity = 201/276 (72.83%), Postives = 228/276 (82.61%), Query Frame = 1
Query: 1 MSDV-PANSVQALIDSPAAPR-ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
MS+V PA S L PAA R ES R AFPF+VV L WE A +FP KLFP +E +AAA RLT +G+L HH DT++RLLAGFALAA+ GV IG MGRSRRAED+ LP++S+ APIPG+A+APLFLLWFGLGN A+LLVAFVS FPIIFNTWTGVKAVKE+WVR+AQAMGADDRR+ +VI+PGALPY+LTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLNTDVMLAGV VIG +GLALEK VFQRLER+TV+RWGMM
Sbjct: 91 MSNVAPAVSPHMLPARPAAQRGESHWRLFARTAFPFLVVALAWEATAHLDVFPRKLFPPLEEVAAALLRLTADGVLPHHVLDTLVRLLAGFALAAVAGVAIGFAMGRSRRAEDVALPLISIGAPIPGLAYAPLFLLWFGLGNVTAVLLVAFVSAFPIIFNTWTGVKAVKEVWVRSAQAMGADDRRLLHHVILPGALPYMLTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNTDVMLAGVAVIGAIGLALEKLVFQRLERYTVVRWGMM 366
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A537V064_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V064_9PROT) HSP 1 Score: 393 bits (1009), Expect = 8.830e-135 Identity = 195/276 (70.65%), Postives = 228/276 (82.61%), Query Frame = 1
Query: 1 MSDV-PANSVQALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
MSD+ PA S + + A ESR + R AFPF+VV L WE A G+FP KLFP +E +AAA RLT +G+L HH DT+LRLLAGFALAA+ GV IG MGRSRRAED+ LP+VS+ APIPG+A+APLFLLWFGLGN A+LLV FVS FP++FNTWTGVKAVK+IWVR+AQAMGAD+RR+ +VI+PGALPY+LTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLNTDVMLAGV VIG +GLALEK VFQRLE++TV+ WGMM+
Sbjct: 62 MSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVALAWEVTAHLGIFPRKLFPPLEDVAAALVRLTADGVLPHHVLDTLLRLLAGFALAAVAGVAIGFAMGRSRRAEDVFLPLVSIGAPIPGLAYAPLFLLWFGLGNTTAVLLVTFVSAFPVVFNTWTGVKAVKDIWVRSAQAMGADNRRLLHHVILPGALPYVLTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNTDVMLAGVAVIGAIGLALEKLVFQRLEQYTVVPWGMMS 337 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20297.1.1 >prot_P-wetherbeei_contig20297.1.1 ID=prot_P-wetherbeei_contig20297.1.1|Name=mRNA_P-wetherbeei_contig20297.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp MSDVPANSVQALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFback to top mRNA from alignment at P-wetherbeei_contig20297:140..967+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20297.1.1 ID=mRNA_P-wetherbeei_contig20297.1.1|Name=mRNA_P-wetherbeei_contig20297.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig20297:140..967+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20297:140..967+ >mRNA_P-wetherbeei_contig20297.1.1 ID=mRNA_P-wetherbeei_contig20297.1.1|Name=mRNA_P-wetherbeei_contig20297.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig20297:140..967+ (Phaeothamnion wetherbeei SAG_119_79)back to top |