mRNA_P-wetherbeei_contig20297.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20297.1.1
Unique NamemRNA_P-wetherbeei_contig20297.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: UPI001E3AFD8D (ABC transporter permease n=1 Tax=Leptospira sp. severe_002 TaxID=2838237 RepID=UPI001E3AFD8D)

HSP 1 Score: 520 bits (1338), Expect = 8.370e-186
Identity = 259/275 (94.18%), Postives = 267/275 (97.09%), Query Frame = 1
Query:    1 MSDVPANSVQALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
            MSDVPANSVQALIDSPA P+ESRLH IWRNAFPFI VGLIWE VARAG+FPPKLFPTIETIAAAFWRLTMNGILLHHAFDTI RLLAGFALAAI+GV IGILMGRSRRAEDICLP+VSMLAPIPGIAWAPLFLLWFGLGN+PAILLVAFVSLFPIIFNTWTGVKAVKEIWVR+AQAMGADDRR+FVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVML+GVFVIGVLGLALEK VFQRLERFTV RWGMMT
Sbjct:    4 MSDVPANSVQALIDSPA-PQESRLHMIWRNAFPFIAVGLIWEAVARAGVFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTIWRLLAGFALAAIVGVAIGILMGRSRRAEDICLPLVSMLAPIPGIAWAPLFLLWFGLGNRPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRSAQAMGADDRRLFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLSGVFVIGVLGLALEKLVFQRLERFTVQRWGMMT 277          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A537L377_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L377_9PROT)

HSP 1 Score: 430 bits (1106), Expect = 8.010e-150
Identity = 208/264 (78.79%), Postives = 236/264 (89.39%), Query Frame = 1
Query:   31 ALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
            A++ +PAA RE+R   +WRNAFPF+ +G IWETVARAG+FPP+LFPT+ETIAAAFWRLT+NGIL HHA DT++RL AGFALAAI GV IGI MGRSR AEDI LP+VS+ APIPG+A+APLFLLWFGLGN  A+LLV FVS FP++FNTWTGVKAVKEIWVR+AQAMGAD+RR+F  VI+PGALPYILTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLN DVMLAGV VI ++GLALEK VFQRLE FTV+RWGMM
Sbjct:   54 AILATPAAQREARWRVVWRNAFPFLALGAIWETVARAGVFPPRLFPTLETIAAAFWRLTLNGILPHHALDTMVRLGAGFALAAIAGVAIGIAMGRSRTAEDIFLPLVSIGAPIPGLAYAPLFLLWFGLGNTSAVLLVGFVSAFPVVFNTWTGVKAVKEIWVRSAQAMGADNRRLFRYVILPGALPYILTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNMDVMLAGVAVIAIIGLALEKLVFQRLENFTVVRWGMM 317          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A127ER36_9HYPH (Taurine ABC transporter permease n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ER36_9HYPH)

HSP 1 Score: 409 bits (1050), Expect = 5.030e-142
Identity = 203/253 (80.24%), Postives = 223/253 (88.14%), Query Frame = 1
Query:   64 SRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
            +R     RN FPF+VV  +WE VARAG+FPPKLFP++ TIA  F RLT NGIL HH FDTILRLLAGFALAAI GVV+GILMGRSRR EDI LP+VS+ APIPG+A+APLFLLWFGLGN  A+LLVAFVS FPIIFNTWTGVKAVKEIWVR+A AMGADDRR+FV VIVPGALPYILTGLRLGLAQAWR LVG+EMLA+VPWGLGWMIFGAREFLNTDVMLAGV VI VLGLALEK VFQ++E +TVMRWGM+
Sbjct:   18 ARWRVFARNVFPFVVVLGLWEIVARAGVFPPKLFPSLVTIAETFVRLTANGILPHHTFDTILRLLAGFALAAIAGVVLGILMGRSRRIEDIALPLVSIGAPIPGLAYAPLFLLWFGLGNTSAVLLVAFVSAFPIIFNTWTGVKAVKEIWVRSALAMGADDRRLFVKVIVPGALPYILTGLRLGLAQAWRILVGIEMLAAVPWGLGWMIFGAREFLNTDVMLAGVVVIAVLGLALEKLVFQKIEEYTVMRWGMV 270          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A1Q7BPW8_9PROT (ABC transmembrane type-1 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BPW8_9PROT)

HSP 1 Score: 404 bits (1038), Expect = 4.180e-140
Identity = 202/277 (72.92%), Postives = 232/277 (83.75%), Query Frame = 1
Query:    1 MSDV-PANSVQALIDSPAAPR-ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
            MSD+ PA S   L    +A R ESR   I R AFPF+VVG+ WE  AR G+FP KLFP +E +AAAF RLT NG+L HH  DT++RLLAGFALAA  G+ IG  MGRSRRAED+ LP++S+ APIPG+A+APLFLLWFGLGN  A+LLVAFVS FPI+FNTWTGVKAVKEIWVR+AQAMGADDRR+  +VI+PGALPY+LTGLRLGLAQAWR LVGVEMLA+V WGLGWMIFGAREFLNTDVMLAGV VIG +GLALEK VFQRLE++TV+RWGMM+
Sbjct:    1 MSDLAPATSASVLTAGTSAQRGESRWRVIARTAFPFLVVGIAWEITARLGVFPRKLFPPLEEVAAAFIRLTANGVLAHHVLDTLVRLLAGFALAAAAGIAIGFAMGRSRRAEDVFLPLISIGAPIPGLAYAPLFLLWFGLGNMTAVLLVAFVSAFPIVFNTWTGVKAVKEIWVRSAQAMGADDRRLLHHVILPGALPYVLTGLRLGLAQAWRILVGVEMLAAVSWGLGWMIFGAREFLNTDVMLAGVAVIGAIGLALEKLVFQRLEQYTVVRWGMMS 277          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A6L5FLC2_9HYPH (ABC transporter permease subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FLC2_9HYPH)

HSP 1 Score: 400 bits (1029), Expect = 1.170e-138
Identity = 200/267 (74.91%), Postives = 228/267 (85.39%), Query Frame = 1
Query:   31 ALIDSPAAPR--ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
            AL  +PAA      RL A+ R AFPF VV  +WE VA  G+F P+LFPT+E + +AF +LT NGILLHHA  T++RL+ GFALAAI+GV +GILMGRSRR EDI LP+VS++APIPGIA+APLFLLWFGLGN PA+LLV FV+ FPIIFNTWTGVKAVKEIWVR+AQAMGAD RR+F +VI+PGALPYILTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLNTDVML+GV VI +LGLALEK VFQRLE  TV+RWGMMT
Sbjct:   12 ALPSAPAAALVWNDRLRAVLRTAFPFAVVLGLWEIVAHLGIFHPRLFPTVEEVVSAFVQLTANGILLHHAVQTVIRLIGGFALAAIVGVGLGILMGRSRRMEDILLPLVSIMAPIPGIAYAPLFLLWFGLGNVPAVLLVGFVAGFPIIFNTWTGVKAVKEIWVRSAQAMGADSRRLFRHVILPGALPYILTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNTDVMLSGVAVIAILGLALEKFVFQRLENHTVVRWGMMT 278          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A345ZYE2_9HYPH (ABC transporter permease n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZYE2_9HYPH)

HSP 1 Score: 400 bits (1027), Expect = 2.040e-138
Identity = 190/252 (75.40%), Postives = 227/252 (90.08%), Query Frame = 1
Query:   70 LHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
            L AI RN FPF+VVGL+WE VAR G+FPP+LFPT+E +AA+F RLT++GIL HHA +T++RLL+GFALAAI G VIGILMGRSRRAEDI LP+VS+ APIPG+A+APLFLLWFGLGN  A+LLV FVS FP+IFN+WTGVKAVKEIW+R+A A+GADDRR+F +VI+PGALPYILTGLRLGLAQAWR LV VEMLA+VPWGLGW+IFGAREFLNTDVMLAG+ VI ++G+ALEK VFQ++E +TV+RWGM+T
Sbjct:   25 LRAILRNMFPFLVVGLLWEIVARLGVFPPRLFPTLEEVAASFVRLTVSGILPHHAIETVIRLLSGFALAAIAGTVIGILMGRSRRAEDIMLPLVSICAPIPGLAYAPLFLLWFGLGNVSAVLLVGFVSAFPVIFNSWTGVKAVKEIWLRSAVALGADDRRLFTHVILPGALPYILTGLRLGLAQAWRILVAVEMLAAVPWGLGWLIFGAREFLNTDVMLAGIAVIALIGIALEKLVFQKIEDYTVVRWGMVT 276          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A1W6ZV16_9HYPH (ABC transmembrane type-1 domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZV16_9HYPH)

HSP 1 Score: 397 bits (1020), Expect = 2.060e-137
Identity = 194/258 (75.19%), Postives = 226/258 (87.60%), Query Frame = 1
Query:   49 AAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
            A   E+    + RNAFPFIVVG+ WE VAR+G+FP KLFPT+  IA  FW LT++GIL HHA +TILRL+AGFALAA +GV+IGI+MGRSRRAED  LP+V++LAPIPGIA+APLFLLWFGLGN   ILLVAFVS FPI+FNTWTGVKAVKEIW+R+AQAMGA+DRR+F +VI+PGALPYILTGLRLGLAQAWR LVGVEMLA+V WGLGW+IFGAREFLNTDVML GV VIG++GLALEK VFQ+LE +T++RWGMM
Sbjct:   16 AGSAEAWWRPVARNAFPFIVVGIAWEIVARSGMFPRKLFPTLGDIAETFWALTISGILPHHAAETILRLIAGFALAAAVGVLIGIMMGRSRRAEDYTLPLVAILAPIPGIAYAPLFLLWFGLGNFSTILLVAFVSSFPIVFNTWTGVKAVKEIWLRSAQAMGANDRRLFRHVILPGALPYILTGLRLGLAQAWRVLVGVEMLAAVSWGLGWLIFGAREFLNTDVMLCGVAVIGLIGLALEKLVFQKLEDYTLVRWGMM 273          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A6N7GVJ1_9HYPH (ABC transporter permease subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GVJ1_9HYPH)

HSP 1 Score: 393 bits (1009), Expect = 1.010e-135
Identity = 191/254 (75.20%), Postives = 220/254 (86.61%), Query Frame = 1
Query:   61 ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
            ESRL    R AFPF+VVG +WE  A AG+FPP+LFPT+E IAAAFWRLT+ GIL  H  +T+LRL AGF LA +IGVV+GI MGRSRRAED  LP+VS+ APIPGIA+APLF+LWFGLGN  AILLV FVS FPIIFNTWTGVKAVKEIWVR+AQAMGAD RR+F +VI+PG+LPYI TGLRLGLAQAWR LV VE+LA+VPWGLGW+IFGAREFLNTDVMLAGV VIG++GL LEK +F+RLE++TV+RWGMM
Sbjct:   20 ESRLRVAARIAFPFLVVGAMWEITAHAGVFPPRLFPTLEEIAAAFWRLTVAGILPRHVAETLLRLFAGFVLAGVIGVVVGIAMGRSRRAEDYLLPLVSIAAPIPGIAYAPLFMLWFGLGNLSAILLVGFVSAFPIIFNTWTGVKAVKEIWVRSAQAMGADQRRLFRHVILPGSLPYIFTGLRLGLAQAWRILVVVELLAAVPWGLGWLIFGAREFLNTDVMLAGVAVIGMIGLLLEKLMFERLEQYTVVRWGMM 273          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A537SI67_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SI67_9PROT)

HSP 1 Score: 395 bits (1015), Expect = 3.030e-135
Identity = 201/276 (72.83%), Postives = 228/276 (82.61%), Query Frame = 1
Query:    1 MSDV-PANSVQALIDSPAAPR-ESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMM 822
            MS+V PA S   L   PAA R ES      R AFPF+VV L WE  A   +FP KLFP +E +AAA  RLT +G+L HH  DT++RLLAGFALAA+ GV IG  MGRSRRAED+ LP++S+ APIPG+A+APLFLLWFGLGN  A+LLVAFVS FPIIFNTWTGVKAVKE+WVR+AQAMGADDRR+  +VI+PGALPY+LTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLNTDVMLAGV VIG +GLALEK VFQRLER+TV+RWGMM
Sbjct:   91 MSNVAPAVSPHMLPARPAAQRGESHWRLFARTAFPFLVVALAWEATAHLDVFPRKLFPPLEEVAAALLRLTADGVLPHHVLDTLVRLLAGFALAAVAGVAIGFAMGRSRRAEDVALPLISIGAPIPGLAYAPLFLLWFGLGNVTAVLLVAFVSAFPIIFNTWTGVKAVKEVWVRSAQAMGADDRRLLHHVILPGALPYMLTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNTDVMLAGVAVIGAIGLALEKLVFQRLERYTVVRWGMM 366          
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Match: A0A537V064_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V064_9PROT)

HSP 1 Score: 393 bits (1009), Expect = 8.830e-135
Identity = 195/276 (70.65%), Postives = 228/276 (82.61%), Query Frame = 1
Query:    1 MSDV-PANSVQALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLFPPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIGILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFVSLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTGLRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGVLGLALEKGVFQRLERFTVMRWGMMT 825
            MSD+ PA S   +  + A   ESR   + R AFPF+VV L WE  A  G+FP KLFP +E +AAA  RLT +G+L HH  DT+LRLLAGFALAA+ GV IG  MGRSRRAED+ LP+VS+ APIPG+A+APLFLLWFGLGN  A+LLV FVS FP++FNTWTGVKAVK+IWVR+AQAMGAD+RR+  +VI+PGALPY+LTGLRLGLAQAWR LVGVEMLA+VPWGLGWMIFGAREFLNTDVMLAGV VIG +GLALEK VFQRLE++TV+ WGMM+
Sbjct:   62 MSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVALAWEVTAHLGIFPRKLFPPLEDVAAALVRLTADGVLPHHVLDTLLRLLAGFALAAVAGVAIGFAMGRSRRAEDVFLPLVSIGAPIPGLAYAPLFLLWFGLGNTTAVLLVTFVSAFPVVFNTWTGVKAVKDIWVRSAQAMGADNRRLLHHVILPGALPYVLTGLRLGLAQAWRILVGVEMLAAVPWGLGWMIFGAREFLNTDVMLAGVAVIGAIGLALEKLVFQRLEQYTVVPWGMMS 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20297.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E3AFD8D8.370e-18694.18ABC transporter permease n=1 Tax=Leptospira sp. se... [more]
A0A537L377_9PROT8.010e-15078.79ABC transporter permease n=1 Tax=Alphaproteobacter... [more]
A0A127ER36_9HYPH5.030e-14280.24Taurine ABC transporter permease n=2 Tax=Rhodoplan... [more]
A0A1Q7BPW8_9PROT4.180e-14072.92ABC transmembrane type-1 domain-containing protein... [more]
A0A6L5FLC2_9HYPH1.170e-13874.91ABC transporter permease subunit n=1 Tax=Hyphomicr... [more]
A0A345ZYE2_9HYPH2.040e-13875.40ABC transporter permease n=1 Tax=Pseudolabrys taiw... [more]
A0A1W6ZV16_9HYPH2.060e-13775.19ABC transmembrane type-1 domain-containing protein... [more]
A0A6N7GVJ1_9HYPH1.010e-13575.20ABC transporter permease subunit n=1 Tax=Hyphomicr... [more]
A0A537SI67_9PROT3.030e-13572.83ABC transporter permease n=1 Tax=Alphaproteobacter... [more]
A0A537V064_9PROT8.830e-13570.65ABC transporter permease n=1 Tax=Alphaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20297contigP-wetherbeei_contig20297:140..967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1125973.JNLC01000015_gene3299
PFAMsBPD_transp_1
Model size828
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02050,ko:K15552
KEGG TC3.A.1.16,3.A.1.17,3.A.1.17.1,3.A.1.17.4
KEGG Pathwayko00920,ko02010,map00920,map02010
KEGG ModuleM00188,M00435
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-56
EggNOG OGsCOG0600@1|root,COG0600@2|Bacteria,1MWDJ@1224|Proteobacteria,2U2EB@28211|Alphaproteobacteria,3JS28@41294|Bradyrhizobiaceae
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size828
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.9410264-CDS-P-wetherbeei_contig20297:139..9671683186195.9410264-CDS-P-wetherbeei_contig20297:139..967Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20297 140..967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20297.1.1prot_P-wetherbeei_contig20297.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20297 140..967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20297.1.1

>prot_P-wetherbeei_contig20297.1.1 ID=prot_P-wetherbeei_contig20297.1.1|Name=mRNA_P-wetherbeei_contig20297.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
MSDVPANSVQALIDSPAAPRESRLHAIWRNAFPFIVVGLIWETVARAGLF
PPKLFPTIETIAAAFWRLTMNGILLHHAFDTILRLLAGFALAAIIGVVIG
ILMGRSRRAEDICLPVVSMLAPIPGIAWAPLFLLWFGLGNQPAILLVAFV
SLFPIIFNTWTGVKAVKEIWVRAAQAMGADDRRMFVNVIVPGALPYILTG
LRLGLAQAWRTLVGVEMLASVPWGLGWMIFGAREFLNTDVMLAGVFVIGV
LGLALEKGVFQRLERFTVMRWGMMT*
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mRNA from alignment at P-wetherbeei_contig20297:140..967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20297.1.1 ID=mRNA_P-wetherbeei_contig20297.1.1|Name=mRNA_P-wetherbeei_contig20297.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig20297:140..967+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGACGTCCCCGCCAACTCCGTCCAAGCCCTGATCGACAGTCCGGC CGCGCCGCGGGAATCGCGGCTGCATGCGATCTGGCGCAATGCGTTCCCCT TTATCGTCGTCGGGCTGATCTGGGAGACCGTCGCGCGGGCCGGCCTGTTC CCGCCAAAACTGTTCCCGACCATCGAGACCATCGCCGCCGCATTCTGGCG GCTGACGATGAACGGCATCCTGCTGCATCACGCCTTCGACACCATCCTGC GGCTGCTCGCAGGCTTCGCATTGGCCGCCATCATCGGGGTCGTCATCGGC ATCCTGATGGGCCGCTCGCGCCGCGCGGAGGACATCTGCCTGCCGGTCGT CAGCATGCTCGCGCCGATCCCTGGCATTGCCTGGGCGCCGCTGTTCCTTC TGTGGTTCGGGCTCGGCAACCAGCCGGCGATTTTGCTGGTCGCGTTCGTC TCGCTGTTCCCGATCATCTTCAACACCTGGACCGGCGTGAAGGCCGTCAA AGAAATCTGGGTGCGCGCGGCCCAGGCTATGGGCGCCGACGACCGGCGCA TGTTCGTCAACGTGATCGTACCGGGCGCGCTGCCCTATATCCTCACGGGA TTGCGGCTCGGGCTTGCGCAGGCGTGGCGCACGCTGGTCGGCGTCGAGAT GCTGGCCTCGGTGCCGTGGGGCCTCGGCTGGATGATCTTCGGCGCGCGCG AATTCCTCAACACCGATGTCATGCTCGCGGGCGTGTTTGTCATCGGCGTG CTTGGGCTGGCGCTTGAGAAGGGCGTGTTCCAGCGGCTCGAACGCTTCAC CGTCATGCGCTGGGGGATGATGACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20297:140..967+

>mRNA_P-wetherbeei_contig20297.1.1 ID=mRNA_P-wetherbeei_contig20297.1.1|Name=mRNA_P-wetherbeei_contig20297.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig20297:140..967+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGACGTCCCCGCCAACTCCGTCCAAGCCCTGATCGACAGTCCGGC
CGCGCCGCGGGAATCGCGGCTGCATGCGATCTGGCGCAATGCGTTCCCCT
TTATCGTCGTCGGGCTGATCTGGGAGACCGTCGCGCGGGCCGGCCTGTTC
CCGCCAAAACTGTTCCCGACCATCGAGACCATCGCCGCCGCATTCTGGCG
GCTGACGATGAACGGCATCCTGCTGCATCACGCCTTCGACACCATCCTGC
GGCTGCTCGCAGGCTTCGCATTGGCCGCCATCATCGGGGTCGTCATCGGC
ATCCTGATGGGCCGCTCGCGCCGCGCGGAGGACATCTGCCTGCCGGTCGT
CAGCATGCTCGCGCCGATCCCTGGCATTGCCTGGGCGCCGCTGTTCCTTC
TGTGGTTCGGGCTCGGCAACCAGCCGGCGATTTTGCTGGTCGCGTTCGTC
TCGCTGTTCCCGATCATCTTCAACACCTGGACCGGCGTGAAGGCCGTCAA
AGAAATCTGGGTGCGCGCGGCCCAGGCTATGGGCGCCGACGACCGGCGCA
TGTTCGTCAACGTGATCGTACCGGGCGCGCTGCCCTATATCCTCACGGGA
TTGCGGCTCGGGCTTGCGCAGGCGTGGCGCACGCTGGTCGGCGTCGAGAT
GCTGGCCTCGGTGCCGTGGGGCCTCGGCTGGATGATCTTCGGCGCGCGCG
AATTCCTCAACACCGATGTCATGCTCGCGGGCGTGTTTGTCATCGGCGTG
CTTGGGCTGGCGCTTGAGAAGGGCGTGTTCCAGCGGCTCGAACGCTTCAC
CGTCATGCGCTGGGGGATGATGACGTGA
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