mRNA_P-wetherbeei_contig20293.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20293.2.1
Unique NamemRNA_P-wetherbeei_contig20293.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A3C0TYM1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYM1_9PROT)

HSP 1 Score: 117 bits (293), Expect = 4.440e-32
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGI 255
            +E+ E LRF LAL FVLGL+  CSW  KRMGL PR++G  G  RL V+E++++DAKRKLVL+RRDNVEHL++LNGERDLLIE GI
Sbjct:    1 MEIGEILRFTLALGFVLGLVALCSWLAKRMGLAPRVSGNNGSERLGVIEIKALDAKRKLVLVRRDNVEHLLLLNGERDLLIEQGI 85          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A352KGW0_9PROT (Uncharacterized protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KGW0_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 7.380e-25
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAG-QSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSADIRD-NVTPTPR 300
            +E  +Y+RF LAL+FVLGLIG C+W GKR GLTPR        +RL ++EV+ +DAKRKL+LI RD+ +HL+M+ G+ DL+IE  I       D N TP+ R
Sbjct:    1 MESFDYVRFLLALVFVLGLIGFCAWLGKRAGLTPRAAKRGNTDNRLVLLEVRPIDAKRKLILIGRDDRQHLLMIGGDNDLVIECNISGDTAPEDGNATPSHR 102          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A1Y5TZK5_9PROT (Flagellar biosynthesis protein FliO n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZK5_9PROT)

HSP 1 Score: 95.1 bits (235), Expect = 1.790e-23
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSADIR 276
            +E +  +++ +AL+ VLGLIG  +W GKR G+ PRI+   G  RLSV++V ++DAKR+L+L++RD+V+HL+++ GE DL++ESGI  +   R
Sbjct:    1 MEAISLIQYFVALVVVLGLIGLLAWAGKRFGMAPRISRPGGVRRLSVVDVTTIDAKRRLILVQRDDVQHLLLIGGENDLVVESGIARAEPAR 92          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A2E1EEA8_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E1EEA8_9HYPH)

HSP 1 Score: 94.4 bits (233), Expect = 7.030e-23
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSA 267
            ++  E  RF  AL F+LGLIG C+   +R+GL P ++ A GQ RL ++EV+++DAK +L+LIRRD  EHLI+  GE  LLIE GIE+ A
Sbjct:    1 MDFSEIFRFVAALAFILGLIGVCAIVARRLGLAPGVSAAGGQRRLGIVEVKAIDAKHRLLLIRRDGKEHLILTGGETPLLIEGGIEAPA 89          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A3M1JWW5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JWW5_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 9.130e-22
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRIT---GAAGQSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGI 255
            +E + Y++F +AL+FVL LI    W  +R GL PR+T    A G  RL+++EV  VDA+R+L+LIRRD+ EHL+M+ GE+D +IESGI
Sbjct:    1 MEAVSYMQFIVALVFVLALIVGLGWAARRFGLAPRVTLSGSAKGDKRLAIVEVLPVDARRRLLLIRRDDTEHLVMIGGEQDTVIESGI 88          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A2N3EJN8_9PROT (Flagellar assembly protein FliO n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A2N3EJN8_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.860e-21
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSADIRDNVTPT 294
            ++  E  RF  AL F+LGLIG C+   +++GL P  T   GQ RL ++EV++VDAK +L+LIRRD  EHLI+  GE  LLIE+GI++   +      T
Sbjct:    1 MDFSEIFRFVAALAFILGLIGVCAILARKLGLVPGATPVGGQRRLGIVEVRAVDAKHRLLLIRRDGKEHLILTGGEHPLLIEAGIDAPVPVETRPAET 98          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: UPI0019145E1B (flagellar biosynthetic protein FliO n=4 Tax=Skermanella TaxID=204447 RepID=UPI0019145E1B)

HSP 1 Score: 89.0 bits (219), Expect = 4.700e-21
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSR-LSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSAD 270
            +EM  YLRF LAL+FVLGLI   +WF +R G         G+ R L ++EV  +DA+RKLVL+RRD VEHL++L    DL++ESGI  +A+
Sbjct:    1 MEMETYLRFALALVFVLGLIVVAAWFMRRFGYGGAAASRPGRERRLGIVEVAQIDARRKLVLVRRDGVEHLVLLGMNADLVLESGIRPAAE 91          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A6N6VEG3_9HYPH (Uncharacterized protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VEG3_9HYPH)

HSP 1 Score: 89.7 bits (221), Expect = 5.020e-21
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSADIRDNVTPTP 297
            +++ E  RF  AL F++GLIG C++  KR G      G + Q RLSV EV+++DAK +LVLIRRD  EHLI++ GE +LLIE+GI++   I +  T TP
Sbjct:    5 MDLTEIFRFVAALAFIVGLIGVCAYAAKRFGFATGGFGGSAQKRLSVTEVKALDAKHRLVLIRRDGKEHLILMGGEHNLLIETGIDAPT-IVEAATMTP 102          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: W9H094_9PROT (Uncharacterized protein n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9H094_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 6.850e-21
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQ-SRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSADIRDNVTP 291
            +EM  YLRF LAL+FVLGLI   +W  +R G    +    G+  RL V+EV  +DA+R+LVL+RRD+VEHL++L    DL++E+GI + AD      P
Sbjct:    1 MEMETYLRFVLALVFVLGLIVVAAWLMRRFGYAGAVAARPGRVRRLGVVEVAQIDARRRLVLVRRDDVEHLVLLGMNNDLVLEAGIRAPADAVPGAAP 98          
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Match: A0A2D8RVW5_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D8RVW5_9HYPH)

HSP 1 Score: 89.4 bits (220), Expect = 7.110e-21
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LEMMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSRLSVMEVQSVDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSA--DIRDNVTPTP 297
            ++  E  RF  AL F+LGLIG C+   +R G  P  + A GQ RL ++EV+++DAK +L+LIRRD  EHLI+  GE  LLIES I++ A  ++     P P
Sbjct:    1 MDFSEIFRFVAALAFILGLIGVCAILARRFGFAPGASPAGGQRRLGIVEVKAIDAKHRLLLIRRDGKEHLILTGGETPLLIESSIDAPAPAEVEQPAQPVP 101          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20293.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYM1_9PROT4.440e-3267.06Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A352KGW0_9PROT7.380e-2550.98Uncharacterized protein n=4 Tax=Alphaproteobacteri... [more]
A0A1Y5TZK5_9PROT1.790e-2346.74Flagellar biosynthesis protein FliO n=1 Tax=Oceani... [more]
A0A2E1EEA8_9HYPH7.030e-2351.69Uncharacterized protein n=2 Tax=Hyphomicrobiales T... [more]
A0A3M1JWW5_9PROT9.130e-2251.14Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2N3EJN8_9PROT1.860e-2145.92Flagellar assembly protein FliO n=2 Tax=unclassifi... [more]
UPI0019145E1B4.700e-2150.55flagellar biosynthetic protein FliO n=4 Tax=Skerma... [more]
A0A6N6VEG3_9HYPH5.020e-2148.48Uncharacterized protein n=1 Tax=Parvibaculum sedim... [more]
W9H094_9PROT6.850e-2146.94Uncharacterized protein n=1 Tax=Skermanella stibii... [more]
A0A2D8RVW5_9HYPH7.110e-2145.54Uncharacterized protein n=2 Tax=Hyphomicrobiales T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20293contigP-wetherbeei_contig20293:527..826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog402881.Plav_2569
Preferred namefliO
PFAMsFliO
Model size300
Max annot lvl2|Bacteria
KEGG koko:K02418
KEGG TC3.A.6.2
KEGG Pathwayko02040,map02040
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.57e-19
EggNOG OGsCOG3190@1|root,COG3190@2|Bacteria
Descriptionflagellar
Cds size294
COG categoryN
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.8317423-CDS-P-wetherbeei_contig20293:526..8201683186195.8317423-CDS-P-wetherbeei_contig20293:526..820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20293 527..820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.8425472-UTR-P-wetherbeei_contig20293:820..8261683186195.8425472-UTR-P-wetherbeei_contig20293:820..826Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20293 821..826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20293.2.1prot_P-wetherbeei_contig20293.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20293 527..820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20293.2.1

>prot_P-wetherbeei_contig20293.2.1 ID=prot_P-wetherbeei_contig20293.2.1|Name=mRNA_P-wetherbeei_contig20293.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
MMEYLRFGLALIFVLGLIGACSWFGKRMGLTPRITGAAGQSRLSVMEVQS
VDAKRKLVLIRRDNVEHLIMLNGERDLLIESGIESSADIRDNVTPTPR
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mRNA from alignment at P-wetherbeei_contig20293:527..826-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20293.2.1 ID=mRNA_P-wetherbeei_contig20293.2.1|Name=mRNA_P-wetherbeei_contig20293.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig20293:527..826- (Phaeothamnion wetherbeei SAG_119_79)
TTGGAAATGATGGAATATCTGCGCTTCGGCCTGGCGTTAATATTTGTGCT TGGGCTGATTGGCGCCTGCTCCTGGTTTGGCAAGCGCATGGGGCTGACGC CTCGCATCACGGGCGCCGCCGGGCAGAGCCGCCTGTCGGTCATGGAAGTG CAATCCGTGGATGCCAAACGCAAGCTGGTGCTGATCCGCCGCGACAATGT TGAACATCTGATCATGCTGAATGGTGAGCGCGACCTGCTCATAGAAAGCG GCATCGAGTCCAGCGCAGATATTCGGGATAATGTCACGCCAACGCCACGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20293:527..826-

>mRNA_P-wetherbeei_contig20293.2.1 ID=mRNA_P-wetherbeei_contig20293.2.1|Name=mRNA_P-wetherbeei_contig20293.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig20293:527..826- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGAATATCTGCGCTTCGGCCTGGCGTTAATATTTGTGCTTGGGCT
GATTGGCGCCTGCTCCTGGTTTGGCAAGCGCATGGGGCTGACGCCTCGCA
TCACGGGCGCCGCCGGGCAGAGCCGCCTGTCGGTCATGGAAGTGCAATCC
GTGGATGCCAAACGCAAGCTGGTGCTGATCCGCCGCGACAATGTTGAACA
TCTGATCATGCTGAATGGTGAGCGCGACCTGCTCATAGAAAGCGGCATCG
AGTCCAGCGCAGATATTCGGGATAATGTCACGCCAACGCCACGC
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