mRNA_P-wetherbeei_contig20293.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20293.1.1
Unique NamemRNA_P-wetherbeei_contig20293.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A3C0TYR4_9PROT (Flagellar biosynthetic protein FliP (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYR4_9PROT)

HSP 1 Score: 190 bits (482), Expect = 2.200e-58
Identity = 106/130 (81.54%), Postives = 116/130 (89.23%), Query Frame = 1
Query:   64 PAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAPL 453
            P  AQSISIDLGG  G+ A  +ED  LGG NSVTGR+LQL+A+IS+LSVAPGILVTVT+FTRI VVLSLMRSA+GTQT+PPNTV+ISLALFLTAFVMAPTFQKSY DGILPLLEERIEAPVA ER VAPL
Sbjct:   23 PVFAQSISIDLGGATGSGAPDEEDV-LGGFNSVTGRVLQLVALISILSVAPGILVTVTAFTRIAVVLSLMRSAMGTQTTPPNTVLISLALFLTAFVMAPTFQKSYTDGILPLLEERIEAPVAIERAVAPL 151          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A3D3UIH0_9PROT (Flagellar biosynthetic protein FliP (Fragment) n=8 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UIH0_9PROT)

HSP 1 Score: 161 bits (407), Expect = 4.060e-47
Identity = 93/138 (67.39%), Postives = 113/138 (81.88%), Query Frame = 1
Query:   43 VLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPL-GGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAPL 453
            +LF+    A AQ+I+IDLG         D D+ L GG NS+TGR++QLIA I+VLS+APGILVTVTSFTRIVVVLSL+RSA+GTQTSPPNTV+ISLALFLTAFVMAPTF ++YE GI PL+E+RI+   AF+RTVAP+
Sbjct:   19 ILFLPDGQALAQNITIDLGD--------DADSELLGGTNSLTGRLIQLIAFITVLSIAPGILVTVTSFTRIVVVLSLLRSALGTQTSPPNTVIISLALFLTAFVMAPTFNQAYEQGIKPLMEDRIDETEAFDRTVAPV 148          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A2E0HBI1_9PROT (Flagellar biosynthetic protein FliP n=3 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A2E0HBI1_9PROT)

HSP 1 Score: 141 bits (356), Expect = 3.140e-39
Identity = 78/141 (55.32%), Postives = 107/141 (75.89%), Query Frame = 1
Query:   28 ACLLAVLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAP 450
            A +L    V++ P+ AQ++++D+G   G               S T RILQ++A+I+VLS+APG+LVT+TSFTRIVVVLSL+R+A+GTQ SPPN VMISLALFL+AF+MAPTF+++++ GILPL+EERI+   AFE+T AP
Sbjct:    2 ALILLFTLVAIEPSCAQTLTLDIGEPGG---------------STTARILQMVALIAVLSLAPGLLVTITSFTRIVVVLSLLRTALGTQQSPPNVVMISLALFLSAFIMAPTFEQAWKTGILPLIEERIDETEAFEKTAAP 127          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A523F9T9_9PROT (Flagellar biosynthetic protein FliP (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523F9T9_9PROT)

HSP 1 Score: 140 bits (353), Expect = 7.370e-39
Identity = 83/148 (56.08%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   13 RPLFTACLLA-VLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAPL 453
            RP F A L A +L V+  PA AQS ++DLG                G  S TGRI+QLIA+++VLS+AP IL+ VTSFTRIVVVLS +RSA+G Q +PPN VM+SLALFLT F+MAPT +++Y DGI PL+E RI+   AF RTVAP+
Sbjct:    2 RPWFAALLGAGLLLVTTGPAEAQSFTLDLGE---------------GQGSATGRIIQLIALLTVLSLAPAILMMVTSFTRIVVVLSFLRSALGVQQTPPNMVMVSLALFLTGFIMAPTMERAYNDGIAPLIENRIDESEAFTRTVAPI 134          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A4R6WWH2_9PROT (Flagellar biosynthetic protein FliP n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WWH2_9PROT)

HSP 1 Score: 139 bits (351), Expect = 2.440e-38
Identity = 88/150 (58.67%), Postives = 105/150 (70.00%), Query Frame = 1
Query:    4 LLTRPLFTACLLAVLFVSL-APAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAP 450
            L+ R L  A  LA L   L APA AQS + DLG           D P GG    TGRI+QL+A+I+VLSVAPGIL+TVTSFTRIVVVLSL+R+A+G Q +PPN V++SLALFLT+FVMAPTFQ++YEDGI PL+ E I    AF    AP
Sbjct:    3 LVQRSLLAALSLAALAALLTAPALAQSFTFDLG-----------DDPGGG---TTGRIIQLVALITVLSVAPGILITVTSFTRIVVVLSLLRAALGAQQTPPNMVLVSLALFLTSFVMAPTFQRAYEDGIAPLIAEEITEEQAFAAATAP 138          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A2E2YB92_9PROT (Flagellar biosynthetic protein FliP n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2YB92_9PROT)

HSP 1 Score: 140 bits (353), Expect = 2.810e-38
Identity = 77/143 (53.85%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   22 FTACLLAVLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAP 450
            F A + A +F +  P  AQ++++D+G   G               S T RILQ++A+++VLS+APG+LVT+TSFTRIVVVLSL+R+A+GTQ SPPN VMISLALFL+AF+MAPTF+++++ GILPL+EERI+   AFE+T  P
Sbjct:   45 FVALVSATIFGTTEPTYAQTLTLDIGEPGG---------------STTARILQMVALVAVLSLAPGLLVTITSFTRIVVVLSLLRTALGTQQSPPNVVMISLALFLSAFIMAPTFEQAWKTGILPLIEERIDEAEAFEKTAIP 172          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A8J3E5R1_9PROT (Flagellar biosynthetic protein FliP n=2 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E5R1_9PROT)

HSP 1 Score: 139 bits (349), Expect = 4.620e-38
Identity = 78/139 (56.12%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   34 LLAVLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAP 450
            LL +L +   PA AQS+S+DLG                G  S TG I++L+A+++VLSV PG+LVTVTSFTRIVVVLS +R+AIG Q +PPNTV+ISLALFL+AFVM PT ++SY DGI PL+ E+I+   AFERT  P
Sbjct:   14 LLLMLLLLAGPASAQSLSVDLGD---------------GGGSTTGHIVELVALMTVLSVVPGLLVTVTSFTRIVVVLSFLRTAIGIQQTPPNTVLISLALFLSAFVMGPTLERSYNDGIAPLIAEKIDNETAFERTAKP 137          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A1Y5TY77_9PROT (Flagellar biosynthetic protein FliP n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TY77_9PROT)

HSP 1 Score: 137 bits (344), Expect = 2.890e-37
Identity = 76/139 (54.68%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   37 LAVLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAPL 453
            L  L V+  PA AQS+S+DLG   G                 TGRI+Q++A+++VLS+AP ILV VTSFTRIVVVLSL+RSAIG QT+PPN V+ISL+LFLT F+MAPT Q++Y+ GI PL++E+I+   AF R V P+
Sbjct:   19 LLALLVAATPAAAQSLSLDLGDAGGV---------------FTGRIIQIVALVTVLSLAPAILVMVTSFTRIVVVLSLLRSAIGVQTTPPNVVIISLSLFLTGFIMAPTLQQAYDSGIAPLIDEQIDEQEAFNRVVVPV 142          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A845MA31_9PROT (Flagellar biosynthetic protein FliP n=1 Tax=Sneathiella chungangensis TaxID=1418234 RepID=A0A845MA31_9PROT)

HSP 1 Score: 137 bits (344), Expect = 3.630e-37
Identity = 74/126 (58.73%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   73 AQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAP 450
            AQSIS+D G         D+  PL      TGRI+QL+ +++VLS+AP IL+  TSFTR+VVVLSL+RSA+G Q++PPN V+ISLALFLTAF+MAPTF+ +YE+GI+PL++E+I+   AFERTVAP
Sbjct:   38 AQSISLDFG---------DDSGPL------TGRIVQLVVLMTVLSLAPAILIVTTSFTRLVVVLSLLRSALGVQSTPPNVVIISLALFLTAFIMAPTFESAYENGIVPLIDEQIDETQAFERTVAP 148          
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Match: A0A4R3MIS5_9HYPH (Flagellar biosynthetic protein FliP n=2 Tax=Tepidamorphus gemmatus TaxID=747076 RepID=A0A4R3MIS5_9HYPH)

HSP 1 Score: 136 bits (343), Expect = 4.180e-37
Identity = 79/136 (58.09%), Postives = 102/136 (75.00%), Query Frame = 1
Query:   43 VLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPLGGANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTSPPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAP 450
            VL +S   AGAQSI+I+LG  AG                +T R +QL+A+I+VLS+AP ILV VTSFTRIVVVLSL+R+AIG QT+PPN+VMI+LALFLTA++MAP FQ +Y+DGI PL+++ IE   AF+R+VAP
Sbjct:   23 VLAISAGSAGAQSINIELGEGAG----------------LTERAIQLVALITVLSLAPSILVMVTSFTRIVVVLSLLRTAIGLQTAPPNSVMIALALFLTAYIMAPAFQTAYDDGIRPLVDQEIEIDEAFQRSVAP 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20293.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYR4_9PROT2.200e-5881.54Flagellar biosynthetic protein FliP (Fragment) n=1... [more]
A0A3D3UIH0_9PROT4.060e-4767.39Flagellar biosynthetic protein FliP (Fragment) n=8... [more]
A0A2E0HBI1_9PROT3.140e-3955.32Flagellar biosynthetic protein FliP n=3 Tax=Rhodos... [more]
A0A523F9T9_9PROT7.370e-3956.08Flagellar biosynthetic protein FliP (Fragment) n=1... [more]
A0A4R6WWH2_9PROT2.440e-3858.67Flagellar biosynthetic protein FliP n=1 Tax=Dongia... [more]
A0A2E2YB92_9PROT2.810e-3853.85Flagellar biosynthetic protein FliP n=1 Tax=Rhodos... [more]
A0A8J3E5R1_9PROT4.620e-3856.12Flagellar biosynthetic protein FliP n=2 Tax=Aliido... [more]
A0A1Y5TY77_9PROT2.890e-3754.68Flagellar biosynthetic protein FliP n=1 Tax=Oceani... [more]
A0A845MA31_9PROT3.630e-3758.73Flagellar biosynthetic protein FliP n=1 Tax=Sneath... [more]
A0A4R3MIS5_9HYPH4.180e-3758.09Flagellar biosynthetic protein FliP n=2 Tax=Tepida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20293contigP-wetherbeei_contig20293:1..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123229.AUBC01000001_gene1690
Preferred namefliP
PFAMsFliP
Model size453
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02419
KEGG TC3.A.6.2
KEGG Pathwayko02040,map02040
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.34e-37
EggNOG OGsCOG1338@1|root,COG1338@2|Bacteria,1MVBU@1224|Proteobacteria,2TT93@28211|Alphaproteobacteria,3JRCE@41294|Bradyrhizobiaceae
DescriptionPlays a role in the flagellum-specific transport system
Cds size453
COG categoryN
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.8029358-CDS-P-wetherbeei_contig20293:0..4531683186195.8029358-CDS-P-wetherbeei_contig20293:0..453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20293 1..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20293.1.1prot_P-wetherbeei_contig20293.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20293 1..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20293.1.1

>prot_P-wetherbeei_contig20293.1.1 ID=prot_P-wetherbeei_contig20293.1.1|Name=mRNA_P-wetherbeei_contig20293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MLLTRPLFTACLLAVLFVSLAPAGAQSISIDLGGVAGAAAGADEDAPLGG
ANSVTGRILQLIAMISVLSVAPGILVTVTSFTRIVVVLSLMRSAIGTQTS
PPNTVMISLALFLTAFVMAPTFQKSYEDGILPLLEERIEAPVAFERTVAP
L
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mRNA from alignment at P-wetherbeei_contig20293:1..453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20293.1.1 ID=mRNA_P-wetherbeei_contig20293.1.1|Name=mRNA_P-wetherbeei_contig20293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig20293:1..453- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCTGACTCGCCCATTGTTCACTGCGTGTTTGCTGGCTGTGTTATT TGTGAGCCTGGCGCCGGCTGGCGCCCAGTCGATTTCCATTGATCTGGGCG GAGTTGCGGGCGCCGCCGCAGGTGCAGATGAGGATGCGCCCCTGGGCGGG GCAAATTCAGTAACCGGACGCATCCTTCAACTAATCGCCATGATCAGTGT ACTAAGTGTTGCTCCAGGTATCCTGGTCACTGTGACATCATTTACCCGCA TCGTGGTTGTTCTGTCACTAATGCGCAGCGCCATCGGCACACAAACATCA CCACCAAATACGGTGATGATATCGCTGGCGCTGTTTTTGACAGCATTTGT GATGGCCCCGACCTTTCAGAAATCCTACGAAGACGGCATCCTGCCCCTGC TGGAAGAGCGGATTGAAGCCCCCGTCGCATTTGAACGCACCGTTGCGCCT TTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20293:1..453-

>mRNA_P-wetherbeei_contig20293.1.1 ID=mRNA_P-wetherbeei_contig20293.1.1|Name=mRNA_P-wetherbeei_contig20293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig20293:1..453- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCTGACTCGCCCATTGTTCACTGCGTGTTTGCTGGCTGTGTTATT
TGTGAGCCTGGCGCCGGCTGGCGCCCAGTCGATTTCCATTGATCTGGGCG
GAGTTGCGGGCGCCGCCGCAGGTGCAGATGAGGATGCGCCCCTGGGCGGG
GCAAATTCAGTAACCGGACGCATCCTTCAACTAATCGCCATGATCAGTGT
ACTAAGTGTTGCTCCAGGTATCCTGGTCACTGTGACATCATTTACCCGCA
TCGTGGTTGTTCTGTCACTAATGCGCAGCGCCATCGGCACACAAACATCA
CCACCAAATACGGTGATGATATCGCTGGCGCTGTTTTTGACAGCATTTGT
GATGGCCCCGACCTTTCAGAAATCCTACGAAGACGGCATCCTGCCCCTGC
TGGAAGAGCGGATTGAAGCCCCCGTCGCATTTGAACGCACCGTTGCGCCT
TTG
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