mRNA_P-wetherbeei_contig20292.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20292.1.1
Unique NamemRNA_P-wetherbeei_contig20292.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V1B3P1_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1B3P1_TRISP)

HSP 1 Score: 70.5 bits (171), Expect = 1.440e-13
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  +A+SSR+Q ++A S +E EYMAL +  +E + +R++L +LG  Q TPT +  DN  A  +     H R++ HI IRYHF+R
Sbjct:    5 NGPVAWSSRVQKTIALSTVEAEYMALTEGVKEVKWIRQILMDLGRNQVTPTPLFSDNQCAAFLTKNPQHHRRTKHIDIRYHFIR 88
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 5.740e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  +A+SSR+Q ++A S +E EYMAL ++ +E + +R+LL +LG  Q TPT +  DN  A  +     H RQ+ HI IRYHF+R
Sbjct: 1157 NGPVAWSSRVQKTIALSTVEAEYMALTESVKEVKWIRQLLMDLGRNQVTPTPLFSDNQGAAFLTKNPQHHRQTKHIDIRYHFIR 1240
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V1M2B4_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella papuae TaxID=268474 RepID=A0A0V1M2B4_9BILA)

HSP 1 Score: 67.4 bits (163), Expect = 8.270e-13
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  +A+SSR+Q ++A S +E EY+AL ++ +E + +R+LL +LG  Q TPT +  DN  A  +     H R + HI+I YHF+R
Sbjct:    5 NGPVAWSSRVQKTIALSTVEFEYVALTESVKEVKWIRQLLMDLGRNQITPTPLFSDNQGAALLTKNPQHHRPTKHIYIHYHFIR 88
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V1KR93_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1KR93_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 2.570e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  +A+SSR+Q ++A S +E EYMAL +  +E + +R+LL +LG  Q TPT +  DN  A  +     H R++ HI IRYHF+R
Sbjct:  319 NGPIAWSSRVQKTIALSTVEAEYMALTEGVKEVKWIRQLLMDLGRNQVTPTPLFSDNQGAAFLTKNPQHHRRTKHIDIRYHFIR 402
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V0WRL9_9BILA (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V0WRL9_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 2.690e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  +A+SSR+Q ++A S +E EYMAL +  +E + +R+LL +LG  Q TPT +  DN  A  +     H R++ HI IRYHF+R
Sbjct:  691 NGPIAWSSRVQKTIALSTVEAEYMALTEGVKEVKWIRQLLMDLGRNQVTPTPLFSDNQGAAFLTKNPKHHRRTKHIDIRYHFIR 774
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V0REQ0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Trichinella TaxID=6333 RepID=A0A0V0REQ0_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 2.710e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  +A+SSR+Q ++A S +E EYMAL +  +E + +R+LL +LG  Q TPT +  DN  A  +     H R++ HI IRYHF+R
Sbjct:  833 NGPIAWSSRVQKTIALSTVEAEYMALTEGVKEVKWIRQLLMDLGRNQVTPTPLFSDNQGAAFLTKNPQHHRRTKHIDIRYHFIR 916
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V0TMD8_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0TMD8_9BILA)

HSP 1 Score: 69.7 bits (169), Expect = 4.750e-12
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  +A+SSR+Q ++A S +E EYMAL +  +E + +R+LL +LG  Q TPT +  DN  A  +     H R+  HI IRYHF+R
Sbjct:  305 NGPIAWSSRVQKTIALSTVEAEYMALTEGVKEVKWIRQLLMDLGRNQVTPTPLFSDNQGAAFLTKNPQHHRRRKHIDIRYHFIR 388
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V1NCM3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1NCM3_9BILA)

HSP 1 Score: 65.9 bits (159), Expect = 4.020e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  MA+SSR+Q ++A S +E EYMAL +  +E + + +LL +LG  Q TPT +  DN  A  +     H  ++ HI IRYHF R
Sbjct:  141 NGPMAWSSRVQKTIALSTVEAEYMALTEGVKEVKWICQLLMDLGRNQVTPTPLFSDNQGAAFLTKNPQHHTRTKHIDIRYHFTR 224
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A0V1NDV3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NDV3_9BILA)

HSP 1 Score: 65.9 bits (159), Expect = 1.110e-10
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 NSVMAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            N  MA+SSR+Q ++A S +E EYMAL +  +E + + +LL +LG  Q TPT +  DN  A  +     H  ++ HI IRYHF R
Sbjct:  445 NGPMAWSSRVQKTIALSTVEAEYMALTEGVKEVKWICQLLMDLGRNQVTPTPLFSDNQGAAFLTKNPQHHTRTKHIDIRYHFTR 528
[Close]
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Match: A0A507DMR9_9FUNG (DNA-directed DNA polymerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DMR9_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 3.930e-10
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   10 MAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAIGEDNTVALAVAMTAAHTRQSHHIHIRYHFMR 252
            +A+ S+ QP+VA S  E EYMAL  A +EA  LR+LL ELG  Q  P  I E+N   +A+A       ++ HI IR+HF+R
Sbjct:  595 VAWQSKRQPTVALSSTEAEYMALTQACKEANWLRQLLIELGYPQGLPCKIYEENQGCIALARNPTSHARTKHIDIRHHFIR 675
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V1B3P1_TRISP1.440e-1342.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1MB43_9BILA5.740e-1345.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1M2B4_9BILA8.270e-1341.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1KR93_9BILA2.570e-1244.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0WRL9_9BILA2.690e-1244.05Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A0V0REQ0_9BILA2.710e-1244.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0TMD8_9BILA4.750e-1244.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1NCM3_9BILA4.020e-1142.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1NDV3_9BILA1.110e-1042.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A507DMR9_9FUNG3.930e-1045.68DNA-directed DNA polymerase n=1 Tax=Powellomyces h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20292contigP-wetherbeei_contig20292:408..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra86815
PFAMsRVT_2,rve
Model size252
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.67e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHNV@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size243
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.7595787-UTR-P-wetherbeei_contig20292:407..4161683186195.7595787-UTR-P-wetherbeei_contig20292:407..416Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20292 408..416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.7679858-CDS-P-wetherbeei_contig20292:416..6591683186195.7679858-CDS-P-wetherbeei_contig20292:416..659Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20292 417..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20292.1.1prot_P-wetherbeei_contig20292.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20292 417..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20292.1.1

>prot_P-wetherbeei_contig20292.1.1 ID=prot_P-wetherbeei_contig20292.1.1|Name=mRNA_P-wetherbeei_contig20292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MAFSSRLQPSVARSKIENEYMALFDAAREAEQLRELLAELGLEQATPTAI
GEDNTVALAVAMTAAHTRQSHHIHIRYHFMR
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mRNA from alignment at P-wetherbeei_contig20292:408..659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20292.1.1 ID=mRNA_P-wetherbeei_contig20292.1.1|Name=mRNA_P-wetherbeei_contig20292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig20292:408..659+ (Phaeothamnion wetherbeei SAG_119_79)
AACAGCGTCATGGCTTTCTCGTCTCGGCTGCAGCCTTCGGTGGCACGATC
GAAGATAGAAAACGAGTACATGGCGCTTTTCGACGCGGCACGGGAGGCGG
AGCAGCTGCGGGAGCTGCTGGCTGAACTGGGCTTGGAGCAGGCGACGCCG
ACGGCTATCGGCGAGGACAACACGGTGGCGCTGGCGGTCGCGATGACGGC
TGCACACACGCGCCAGTCGCACCATATCCACATCCGCTACCACTTCATGC
GG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20292:408..659+

>mRNA_P-wetherbeei_contig20292.1.1 ID=mRNA_P-wetherbeei_contig20292.1.1|Name=mRNA_P-wetherbeei_contig20292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig20292:408..659+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTTCTCGTCTCGGCTGCAGCCTTCGGTGGCACGATCGAAGATAGA
AAACGAGTACATGGCGCTTTTCGACGCGGCACGGGAGGCGGAGCAGCTGC
GGGAGCTGCTGGCTGAACTGGGCTTGGAGCAGGCGACGCCGACGGCTATC
GGCGAGGACAACACGGTGGCGCTGGCGGTCGCGATGACGGCTGCACACAC
GCGCCAGTCGCACCATATCCACATCCGCTACCACTTCATGCGG
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