mRNA_P-wetherbeei_contig20281.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20281.1.1
Unique NamemRNA_P-wetherbeei_contig20281.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A3C0TSV3_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TSV3_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.420e-42
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 1
Query:    1 MGHTEILLSVFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQPAVIVATHEFCGPDIK-EKFALNNSNRANLCYQRLVLPLSSDGKNVDRILGALV 459
            +   +I+  VF YW S      +P+RADI+P +++E LPFL +ADV K  A GAEI LRL GTHI+R   +DLTG P+GG +++W DFV+GRD  +   Q + I++ HE    +    K  +   ++A+L YQRL+LPLS+DG+ VD +LGALV
Sbjct:   13 LDQNKIITQVFTYWRSMCMEDRLPSRADIIPADIKELLPFLLLADVGKLTATGAEINLRLTGTHIDRVLEVDLTGCPIGGFDRNWLDFVIGRDFLEAAEQRSAIMSIHELRLTEKPYPKAIMRPGDKAHLRYQRLILPLSTDGQRVDMLLGALV 166          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A353LTP1_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LTP1_9PROT)

HSP 1 Score: 102 bits (255), Expect = 5.900e-25
Identity = 59/141 (41.84%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   52 LKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQPAVIVATHEF-----CGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRILGALV 459
            + G+ +PAR  I P E+   LPFLF+ADV+ +++I     LRL+GTHIER  G DLTG  +   +     F V RD +D   Q  VI +THE          I ++   NN     L Y RL+LPLS DG+ VD + G LV
Sbjct:    1 MHGKRLPARGQIFPAEIANLLPFLFLADVEGESSI----RLRLIGTHIERLLGCDLTGCALDARDGFHAAFGVQRDFYDAAAQKLVIGSTHELYYDTALETGIHDQRPANNIEPIMLRYDRLILPLSRDGQRVDMLFGGLV 137          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A166T8D7_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya valderiana BDU 20041 TaxID=322866 RepID=A0A166T8D7_9CYAN)

HSP 1 Score: 76.3 bits (186), Expect = 7.870e-15
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   28 VFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPV--GGLNKHWPDFVVGRDLFDVVNQPAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRILGALV 459
            ++ YW S+  G  +PARAD+ P ++ + LP L + DVQ +     ++  RLVGT +    G D TGL V  G L   WP   + +D      + AV  A       DIK            L Y+RL+LPLS DGK VD ++G  V
Sbjct:    4 LYRYWHSRHDGARLPARADLDPLDIPQLLPHLMLIDVQHEPF---DLRYRLVGTALVDRMGRDTTGLRVEDGYLGDDWPR--IEQDY-----RTAVFAARPVLTRNDIK------GDRGQRLAYERLLLPLSGDGKTVDMLVGGAV 133          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A8J7SZW3_9PROT (PAS domain-containing protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7SZW3_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 2.390e-14
Identity = 52/148 (35.14%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   19 LLSVFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQ--PAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRILGAL 456
            L ++  YW +K   RP+PARADI P E+   LP L +  V  D         RLVGT I   +G +LTG       +   +  +G +L  V +Q    V  A   +C      + A+       L Y+RL+LPLSSDG+ VD +LG +
Sbjct:   26 LRALHAYWSAKRGARPMPARADIDPIEVPRLLPHLMLVAVSDDPL---RFRFRLVGTEIVARYGAELTG-------RELDEIDLGGELGGVRSQYEETVRAAAPTYC------RHAIETRQGKYLRYERLLLPLSSDGRQVDMLLGGV 157          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A3D3UDN9_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UDN9_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 3.340e-14
Identity = 44/105 (41.90%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  160 AEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQPAVIVATHEF-----CGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRILGALV 459
            + I LRL+GTHIER  G DLTG  +   +     F V RD +D   Q  VI +THE          I ++   NN     L Y RL+LPLS DG+ VD + G LV
Sbjct:    2 SSIRLRLIGTHIERLLGCDLTGCALDARDGFHAAFGVQRDFYDAAAQKLVIGSTHELYYDTALETGIHDQRPANNIEPIMLRYDRLILPLSRDGQRVDMLFGGLV 106          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A1Y6C655_9HYPH (PAS domain-containing protein n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6C655_9HYPH)

HSP 1 Score: 73.6 bits (179), Expect = 2.580e-13
Identity = 57/154 (37.01%), Postives = 70/154 (45.45%), Query Frame = 1
Query:   13 EILLSVFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVV--------NQPAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRILG 450
            E LL VF+YW ++  GR  P RADI P ++ E LP + + DV  D         RLVG+ I +  G D TG         W D  V   + D V         QP     T EF G D K              YQRL+LPLSSDG+ VD + G
Sbjct:   44 ETLLRVFDYWRARRGGRRWPRRADIDPVDIPELLPEIILLDVVGDPP---RFRKRLVGSAIVQKEGSDTTG--------RWLDETVNPTIRDEVLRQHREATEQPEGCCYTVEFAGADGKL-----------YSYQRLLLPLSSDGERVDMLFG 175          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: UPI000A3A9EE8 (PAS domain-containing protein n=1 Tax=Oceanibaculum nanhaiense TaxID=1909734 RepID=UPI000A3A9EE8)

HSP 1 Score: 72.4 bits (176), Expect = 4.980e-13
Identity = 51/147 (34.69%), Postives = 74/147 (50.34%), Query Frame = 1
Query:   16 ILLSVFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQK--DAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQPAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRILG 450
            +L  +  YW S+ + RP+PARADI P ++   LPFL++ DV+      +      RLVGT I    G D TG        H+ D    R   + +       AT +   P   E+  L+ + R    YQRLVLPLS +G++V+ +LG
Sbjct:   21 VLQPLLAYWKSRARDRPLPARADIDPLDIPRLLPFLYLVDVEPLTGGTMPHRFRYRLVGTGIVERNGSDPTG--------HYLDDFENRPFHETIVADYARCATEK--RPVAAERRFLDATGR-RWPYQRLVLPLSENGQDVNMLLG 156          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A0H2MCD4_9PROT (Uncharacterized protein n=1 Tax=Kiloniella spongiae TaxID=1489064 RepID=A0A0H2MCD4_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 1.850e-11
Identity = 44/146 (30.14%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   10 TEILLSVFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQPAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRIL 447
            T+ +  +++YW SK     +PAR DI P E+ ++LP L + DVQKD     +   RL+GTHI      D T   +  L+   P   +  +    V     I     + GP            +  +  + L+LPL+ DG NVD +L
Sbjct:    8 TQPIRKLYDYWLSKASLEKLPARHDIDPAEMADFLPHLVLLDVQKDPL---DFRYRLIGTHIAAYLKNDHTNQWMSTLDHQKPPSRIWNNCKQAVETAQPIYPHTPYVGP-----------KQGIVDMEDLILPLARDGINVDMLL 139          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: A0A0M2RGT4_9PROT (Uncharacterized protein n=1 Tax=Kiloniella litopenaei TaxID=1549748 RepID=A0A0M2RGT4_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 3.290e-11
Identity = 42/139 (30.22%), Postives = 67/139 (48.20%), Query Frame = 1
Query:   31 FEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQPAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRIL 447
            ++YW SK +G  IP+R DI P E+  +LP + + DVQK+     +   RL+GT I      D TG  +  +        V ++    V +   + A   + GP            +  L  + L+LPL+SDGKNV+ ++
Sbjct:   21 YKYWLSKCRGDAIPSREDISPAEMVSFLPNILLLDVQKEPL---DFRFRLIGTRIVPLLNRDYTGELMSTIENLKSPNSVWKNCCKAVERAEPVYAFTPYVGP-----------KKDILDVEDLILPLASDGKNVNMLM 145          
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Match: UPI000EA3221C (PAS domain-containing protein n=1 Tax=Kiloniella sp. EL199 TaxID=2107581 RepID=UPI000EA3221C)

HSP 1 Score: 67.0 bits (162), Expect = 3.640e-11
Identity = 46/146 (31.51%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   10 TEILLSVFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDAAIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQPAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRIL 447
            T+ L  ++EYW SK     +PAR DI P E+ ++LP L + DVQ       +   RLVGTHI      DLT   +  L+   P   +  +  + V     +     + GP  KE   + +          L+LPL+ DG  VD +L
Sbjct:    8 TQPLKKLYEYWQSKSPQNKLPARHDIDPAEMADFLPHLVLLDVQ---TAPLDFRYRLVGTHIAAYLENDLTNQWMSALHHQKPPSTIWNNCKEAVETALPVYPHTPYVGPK-KEIVEVED----------LILPLARDGVKVDMLL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20281.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TSV3_9PROT1.420e-4246.75Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A353LTP1_9PROT5.900e-2541.84Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A166T8D7_9CYAN7.870e-1536.30Uncharacterized protein n=1 Tax=Leptolyngbya valde... [more]
A0A8J7SZW3_9PROT2.390e-1435.14PAS domain-containing protein n=1 Tax=Candidatus O... [more]
A0A3D3UDN9_9PROT3.340e-1441.90Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A1Y6C655_9HYPH2.580e-1337.01PAS domain-containing protein n=1 Tax=Tistlia cons... [more]
UPI000A3A9EE84.980e-1334.69PAS domain-containing protein n=1 Tax=Oceanibaculu... [more]
A0A0H2MCD4_9PROT1.850e-1130.14Uncharacterized protein n=1 Tax=Kiloniella spongia... [more]
A0A0M2RGT4_9PROT3.290e-1130.22Uncharacterized protein n=1 Tax=Kiloniella litopen... [more]
UPI000EA3221C3.640e-1131.51PAS domain-containing protein n=1 Tax=Kiloniella s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20281contigP-wetherbeei_contig20281:466..924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog414684.RC1_2184
PFAMsPAS_5
Model size459
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-13
EggNOG OGsCOG5388@1|root,COG5388@2|Bacteria,1NFX7@1224|Proteobacteria,2UGRY@28211|Alphaproteobacteria,2JU1H@204441|Rhodospirillales
DescriptionPAS domain
Cds size459
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.6423151-CDS-P-wetherbeei_contig20281:465..9241683186195.6423151-CDS-P-wetherbeei_contig20281:465..924Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20281 466..924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20281.1.1prot_P-wetherbeei_contig20281.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20281 466..924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20281.1.1

>prot_P-wetherbeei_contig20281.1.1 ID=prot_P-wetherbeei_contig20281.1.1|Name=mRNA_P-wetherbeei_contig20281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MGHTEILLSVFEYWCSKLKGRPIPARADIVPGELREYLPFLFIADVQKDA
AIGAEITLRLVGTHIERTFGIDLTGLPVGGLNKHWPDFVVGRDLFDVVNQ
PAVIVATHEFCGPDIKEKFALNNSNRANLCYQRLVLPLSSDGKNVDRILG
ALV
back to top

mRNA from alignment at P-wetherbeei_contig20281:466..924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20281.1.1 ID=mRNA_P-wetherbeei_contig20281.1.1|Name=mRNA_P-wetherbeei_contig20281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig20281:466..924+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTCATACTGAAATACTCCTAAGTGTTTTCGAGTATTGGTGTTCTAA ACTTAAGGGACGTCCTATTCCTGCGCGCGCCGATATCGTGCCCGGAGAGT TGCGCGAATACCTGCCTTTCCTGTTTATAGCGGACGTGCAGAAAGATGCG GCCATTGGCGCTGAAATTACCTTGCGGCTGGTGGGCACCCATATTGAACG CACCTTTGGCATTGACCTGACGGGCCTGCCGGTTGGGGGTTTAAACAAGC ATTGGCCGGATTTCGTTGTCGGCCGCGATCTTTTTGATGTTGTAAACCAG CCTGCCGTTATTGTTGCGACACATGAATTTTGCGGTCCTGACATCAAGGA AAAATTTGCCCTTAACAACAGCAACCGCGCCAATCTTTGCTATCAGCGTC TGGTGCTGCCTTTGTCCAGCGATGGAAAAAATGTTGATCGCATTCTGGGG GCGCTGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20281:466..924+

>mRNA_P-wetherbeei_contig20281.1.1 ID=mRNA_P-wetherbeei_contig20281.1.1|Name=mRNA_P-wetherbeei_contig20281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig20281:466..924+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTCATACTGAAATACTCCTAAGTGTTTTCGAGTATTGGTGTTCTAA
ACTTAAGGGACGTCCTATTCCTGCGCGCGCCGATATCGTGCCCGGAGAGT
TGCGCGAATACCTGCCTTTCCTGTTTATAGCGGACGTGCAGAAAGATGCG
GCCATTGGCGCTGAAATTACCTTGCGGCTGGTGGGCACCCATATTGAACG
CACCTTTGGCATTGACCTGACGGGCCTGCCGGTTGGGGGTTTAAACAAGC
ATTGGCCGGATTTCGTTGTCGGCCGCGATCTTTTTGATGTTGTAAACCAG
CCTGCCGTTATTGTTGCGACACATGAATTTTGCGGTCCTGACATCAAGGA
AAAATTTGCCCTTAACAACAGCAACCGCGCCAATCTTTGCTATCAGCGTC
TGGTGCTGCCTTTGTCCAGCGATGGAAAAAATGTTGATCGCATTCTGGGG
GCGCTGGTG
back to top