mRNA_P-wetherbeei_contig20277.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20277.1.1
Unique NamemRNA_P-wetherbeei_contig20277.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC)

HSP 1 Score: 130 bits (326), Expect = 6.520e-30
Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  577 VPQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            +P++V EAL G E  EW  AM+ E  +   NKTW+    +P  R  +GCRWVFAKK  ++G + RYKARLVAQGFSQRPG+D   T+APV    ++R + AL  + D+ +HQMD+VTAYLN
Sbjct:  372 IPRNVKEALSGAEANEWKQAMETEYKSLEENKTWK-LCELPASRTAVGCRWVFAKKFDSEGKLQRYKARLVAQGFSQRPGIDVEQTYAPVTRIQSVRILIALGVQLDWHMHQMDMVTAYLN 491          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A0A1WXQ3_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WXQ3_ZEUCU)

HSP 1 Score: 127 bits (320), Expect = 4.400e-29
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  568 DGPVPQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            DG  P S+  AL  PE  +W  AM+EE+ +H  NKTW  +  +P G+  I  +WVF  KR A+GA +RYKARLV +G SQ+ G+DY  TF+PV+  +++RF+FA+AA+ D  VHQ+D VTA+LN
Sbjct:  767 DGDDPVSLEAALNSPEAGDWKRAMKEEIDSHKSNKTWVLTK-LPKGKRAINSKWVFKTKRNAEGAFVRYKARLVVKGCSQKQGIDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLN 889          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME)

HSP 1 Score: 127 bits (318), Expect = 6.510e-29
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  580 PQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            P ++ EAL  PE  +W  AM+EE+ +H  N+TW  +  +P G+  I  +WVF  KR A+GA++RYKARLV +G SQ+ GVDY  TF+PV+  +++RF+FA+AA+ D  VHQ+D VTA+LN
Sbjct:  233 PVNLEEALNSPEADDWKRAMKEEIESHKTNRTWVLTK-LPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLN 351          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A034VP70_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP70_BACDO)

HSP 1 Score: 127 bits (318), Expect = 7.820e-29
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  580 PQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            P ++ EAL  PE  +W  AM+EE+ +H  N+TW  +  +P G+  I  +WVF  KR A+GA++RYKARLV +G SQ+ GVDY  TF+PV+  +++RF+FA+AA+ D  VHQ+D VTA+LN
Sbjct:  752 PVNLEEALNSPEADDWKRAMKEEIESHKTNRTWVLTK-LPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLN 870          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A5S6QFS2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QFS2_TRIMR)

HSP 1 Score: 119 bits (298), Expect = 2.220e-28
Identity = 58/110 (52.73%), Postives = 81/110 (73.64%), Query Frame = 1
Query:  610 PEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            PE +EW+AA+ EEL+AH RN++W   S++P G+  I  RWVF  K  ADG + + KARLVA+G+ Q+ G+DY  TFAP++S  ++R + ALA + DF V+QMDVVTA+LN
Sbjct:    4 PETSEWLAAVDEELAAHYRNRSWE-ISNLPKGKKAIKSRWVFKTKCKADGTVEKRKARLVAKGYLQKAGIDYEETFAPILSYSSLRLLLALAVQNDFYVNQMDVVTAFLN 112          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 122 bits (306), Expect = 2.720e-28
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  580 PQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            P++  +A+EGPE   W AAM+EEL++    K W   + +P G+  IG +WVF  K  ADG + RYKARLVAQGF+Q+PGVDY  T++PV+S  A+R +F LA   ++ +HQMDV TAYLN
Sbjct:   26 PKTFKQAMEGPESDLWKAAMEEELTSLEVMKVWE-FTELPPGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLN 144          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A1M2VBJ6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VBJ6_TRAPU)

HSP 1 Score: 125 bits (313), Expect = 3.210e-28
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = 1
Query:  544 LTAAAAAVDGPVPQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            + A  A V+G  P+S+AEA   PE   W  AM+EEL+A   ++TWR     P G NV+ CRWVF  K+ A G + RY+ARLVA+GFSQ PGVD+  T+APV    ++R   A AA  DFEVHQ+DV +AYLN
Sbjct:  462 MAAQMAEVEGLDPRSLAEAKRRPEWPRWEEAMEEELTALEAHRTWRLEKPPP-GANVVSCRWVFHAKKDASGNVYRYRARLVARGFSQIPGVDFFDTYAPVAKTASIRIALAFAARHDFEVHQVDVKSAYLN 592          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A060SJQ5_PYCCI (Uncharacterized protein (Fragment) n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJQ5_PYCCI)

HSP 1 Score: 124 bits (311), Expect = 6.900e-28
Identity = 77/163 (47.24%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  484 AFPLPLASEAQQYSAA-------TAEILTAAAAA----VDGPVPQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            A PLP   E ++   A       T EI  AA AA    V+G  P+S+AEA++ PE   W  AM+EEL A   +KTWR     P   N++ CRWVF  K+ A G + RY+ARLVA+GFSQ PGVD+  T+APV    ++R   A AA  +FEVHQ+DV +AYLN
Sbjct:  973 AAPLPTVQERREAEEARAVEDLLTEEIGGAAMAAHMAEVEGLDPRSLAEAMQRPEWPRWEEAMEEELRALEAHKTWRLERPPPDA-NIVSCRWVFHAKKDASGNVYRYRARLVARGFSQVPGVDFFDTYAPVAKTASIRVSLAFAARHNFEVHQLDVKSAYLN 1134          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A1M2VVQ8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VVQ8_TRAPU)

HSP 1 Score: 123 bits (309), Expect = 8.270e-28
Identity = 68/132 (51.52%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  544 LTAAAAAVDGPVPQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            + A  A V+G  P S+AEA   PE   W  AM+EEL A   +KTWR     P G N++ CRWVF  K+ A G + RY+ARLVA+GFSQ PGVD+  T+APV    ++R   A AA  DFEVHQ+DV +AYLN
Sbjct:  391 MAAQMAEVEGLDPCSLAEAKRRPEWPHWEEAMEEELHALEAHKTWRLEKPPP-GANIVSCRWVFHAKKDASGNVYRYRARLVARGFSQIPGVDFFDTYAPVAKTASIRIALAFAARHDFEVHQVDVKSAYLN 521          
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 122 bits (305), Expect = 1.850e-27
Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 1
Query:  553 AAAAVDGPVPQSVAEALEGPEGTEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAILRYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMDVVTAYLN 939
            AA   DG  P++V EA    E  +W AA+++EL    +  TW  +   P G NV+G  WVF  KR A GAI +YKARLVAQGFSQ PGVDY  TFAPV    ++R + ALAA FD+E+HQMDV  AYLN
Sbjct:   21 AAGGGDGVEPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPP-GANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLN 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20277.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A075B3L7_ROZAC6.520e-3052.07Integrase, catalytic core domain-containing protei... [more]
A0A0A1WXQ3_ZEUCU4.400e-2950.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C9RAA9_9HYME6.510e-2950.00POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
A0A034VP70_BACDO7.820e-2950.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A5S6QFS2_TRIMR2.220e-2852.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9WI29_LYGHE2.720e-2851.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2VBJ6_TRAPU3.210e-2851.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SJQ5_PYCCI6.900e-2847.24Uncharacterized protein (Fragment) n=1 Tax=Pycnopo... [more]
A0A1M2VVQ8_TRAPU8.270e-2851.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y9ZVS1_9AGAM1.850e-2753.49Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20277contigP-wetherbeei_contig20277:6..944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog161934.XP_010676254.1
PFAMsRVT_2
Model size939
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.72e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3894V@33090|Viridiplantae,3GY0Z@35493|Streptophyta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size921
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.36408-CDS-P-wetherbeei_contig20277:5..9261683186195.36408-CDS-P-wetherbeei_contig20277:5..926Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20277 6..926 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.37377-UTR-P-wetherbeei_contig20277:926..9441683186195.37377-UTR-P-wetherbeei_contig20277:926..944Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20277 927..944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20277.1.1prot_P-wetherbeei_contig20277.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20277 6..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20277.1.1

>prot_P-wetherbeei_contig20277.1.1 ID=prot_P-wetherbeei_contig20277.1.1|Name=mRNA_P-wetherbeei_contig20277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=307bp
MEANTPQTAAPGTAADAERSNADVGAVAEVAAIAGEGDVIPPLDISRLIP
AFPLAAVATTAVTTATAAMAAAVVAEDSETVAAAAELAASRAAYHRWAAM
RCGVVDDNIASDYVAIAGGCAARSVTAPAMAETMASSAADGVWTELSSPT
GVQNLAFPLPLASEAQQYSAATAEILTAAAAAVDGPVPQSVAEALEGPEG
TEWMAAMQEELSAHNRNKTWRRSSHVPHGRNVIGCRWVFAKKRAADGAIL
RYKARLVAQGFSQRPGVDYGATFAPVMSADAMRFIFALAAEFDFEVHQMD
VVTAYLN
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mRNA from alignment at P-wetherbeei_contig20277:6..944-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20277.1.1 ID=mRNA_P-wetherbeei_contig20277.1.1|Name=mRNA_P-wetherbeei_contig20277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig20277:6..944- (Phaeothamnion wetherbeei SAG_119_79)
GCGGAAACTGCAACAGCAATGGAGGCAAACACACCGCAAACGGCGGCGCC GGGGACGGCAGCGGACGCAGAGCGTAGCAATGCTGACGTTGGAGCCGTTG CGGAGGTCGCGGCAATCGCCGGGGAAGGGGATGTCATCCCTCCACTCGAC ATTAGCCGGCTCATCCCCGCCTTCCCGCTAGCAGCGGTGGCGACGACAGC GGTGACGACAGCGACGGCGGCGATGGCAGCTGCTGTAGTAGCGGAGGATT CTGAGACAGTGGCAGCAGCGGCGGAGTTAGCCGCATCACGTGCCGCCTAC CACCGCTGGGCAGCTATGCGGTGCGGCGTCGTAGATGACAACATTGCATC CGATTATGTCGCTATCGCAGGCGGCTGTGCGGCGCGCAGCGTCACAGCGC CGGCCATGGCGGAGACGATGGCATCGTCTGCGGCTGACGGTGTTTGGACG GAGCTTTCGTCGCCGACCGGCGTACAAAACCTTGCTTTTCCGTTACCTTT GGCGTCCGAGGCGCAGCAGTACTCAGCGGCGACTGCCGAGATCCTCACGG CAGCAGCGGCGGCGGTTGACGGCCCTGTGCCACAGTCTGTAGCGGAGGCG CTGGAGGGACCGGAAGGAACGGAGTGGATGGCGGCGATGCAGGAAGAGCT TTCTGCACATAACCGCAACAAGACATGGCGCCGCTCGTCTCATGTTCCTC ATGGTCGCAACGTCATCGGCTGCCGGTGGGTGTTTGCGAAAAAGCGGGCC GCGGACGGGGCCATTCTGCGCTACAAAGCCCGGCTTGTGGCGCAGGGCTT TTCGCAGCGGCCGGGAGTAGACTACGGCGCAACGTTTGCGCCGGTCATGT CGGCTGACGCGATGCGGTTCATCTTTGCGCTGGCGGCGGAGTTTGATTTC GAGGTGCACCAGATGGACGTGGTAACGGCATATCTCAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20277:6..944-

>mRNA_P-wetherbeei_contig20277.1.1 ID=mRNA_P-wetherbeei_contig20277.1.1|Name=mRNA_P-wetherbeei_contig20277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig20277:6..944- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCAAACACACCGCAAACGGCGGCGCCGGGGACGGCAGCGGACGC
AGAGCGTAGCAATGCTGACGTTGGAGCCGTTGCGGAGGTCGCGGCAATCG
CCGGGGAAGGGGATGTCATCCCTCCACTCGACATTAGCCGGCTCATCCCC
GCCTTCCCGCTAGCAGCGGTGGCGACGACAGCGGTGACGACAGCGACGGC
GGCGATGGCAGCTGCTGTAGTAGCGGAGGATTCTGAGACAGTGGCAGCAG
CGGCGGAGTTAGCCGCATCACGTGCCGCCTACCACCGCTGGGCAGCTATG
CGGTGCGGCGTCGTAGATGACAACATTGCATCCGATTATGTCGCTATCGC
AGGCGGCTGTGCGGCGCGCAGCGTCACAGCGCCGGCCATGGCGGAGACGA
TGGCATCGTCTGCGGCTGACGGTGTTTGGACGGAGCTTTCGTCGCCGACC
GGCGTACAAAACCTTGCTTTTCCGTTACCTTTGGCGTCCGAGGCGCAGCA
GTACTCAGCGGCGACTGCCGAGATCCTCACGGCAGCAGCGGCGGCGGTTG
ACGGCCCTGTGCCACAGTCTGTAGCGGAGGCGCTGGAGGGACCGGAAGGA
ACGGAGTGGATGGCGGCGATGCAGGAAGAGCTTTCTGCACATAACCGCAA
CAAGACATGGCGCCGCTCGTCTCATGTTCCTCATGGTCGCAACGTCATCG
GCTGCCGGTGGGTGTTTGCGAAAAAGCGGGCCGCGGACGGGGCCATTCTG
CGCTACAAAGCCCGGCTTGTGGCGCAGGGCTTTTCGCAGCGGCCGGGAGT
AGACTACGGCGCAACGTTTGCGCCGGTCATGTCGGCTGACGCGATGCGGT
TCATCTTTGCGCTGGCGGCGGAGTTTGATTTCGAGGTGCACCAGATGGAC
GTGGTAACGGCATATCTCAAT
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