mRNA_P-wetherbeei_contig20264.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20264.2.1
Unique NamemRNA_P-wetherbeei_contig20264.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20264.2.1 vs. uniprot
Match: UPI001998623D (Tetratricopeptide repeat protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI001998623D)

HSP 1 Score: 207 bits (527), Expect = 4.550e-67
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 MSAEILNPKMAVFYYYRATVHFYMDRYDDAITDYDLAIRLRRNYADAYYNRGLAFDGKGLLKQALGDLRKALTCNAFAIPASKWTNEARAKVIEIEAKLFETENLQAQT 327
            MSAEILNPKMAVFYYYRATVH+YMDRYDDAITDYDLAIRLRRNYADAYYNRGLAFDGKGLL+ AL DLRKALTCNAFAIPASKWT+EARAK+ EIEAKLFETENLQAQT
Sbjct:   32 MSAEILNPKMAVFYYYRATVHYYMDRYDDAITDYDLAIRLRRNYADAYYNRGLAFDGKGLLRHALSDLRKALTCNAFAIPASKWTDEARAKISEIEAKLFETENLQAQT 140
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BLAST of mRNA_P-wetherbeei_contig20264.2.1 vs. uniprot
Match: UPI0019BC129B (Tetratricopeptide repeat protein n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019BC129B)

HSP 1 Score: 54.3 bits (129), Expect = 2.130e-6
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   31 AVFYYYRATVHFYMDRYDDAITDYDLAIRLRRNYADAYYNRGLAFDGKGLLKQALGDLRKALT 219
            A+FY  R   H     +D AI DY++A+++++NY  A +NRGLA+  KG   +AL D  +A T
Sbjct:   67 ALFYKERGNAHLNQSNFDAAIADYNMALKVKKNYVKAVFNRGLAYYAKGENAKALTDYDRAAT 129
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BLAST of mRNA_P-wetherbeei_contig20264.2.1 vs. uniprot
Match: A0A3A4VLU7_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Microgenomates bacterium TaxID=2093373 RepID=A0A3A4VLU7_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.130e-5
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:    7 AEILNPKMAVFYYYRATVHFYMDRYDDAITDYDLAIRLRRNYADAYYNRGLAFDGKGLLKQALGDLRKALTCNAFAIPASKWTNEARAKVIEIEAKLFETENLQAQT 327
            A +LNP     Y     +++ + ++D+A   + +AI L+ + A+AYYN G A + KG LK AL   +   T  A   P+ K  NE   ++  +E K+  +   QAQT
Sbjct:  575 AILLNPNNPQEYINLGGIYYQLGQWDEAQRQFQIAINLKPDLANAYYNLGHALESKGDLKTALTQYQAVRTLVASDQPSVKKINE---EIAALEQKIGASTQTQAQT 678
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BLAST of mRNA_P-wetherbeei_contig20264.2.1 vs. uniprot
Match: A0A6J4KGR6_9CYAN (TPR domain protein, putative component of TonB system n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6J4KGR6_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 9.190e-5
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:   22 PKMAVFYYYRATVHFYMDRYDDAITDYDLAIRLRRNYADAYYNRGLAFDGKGLLKQALGDLRKAL 216
            P +A  Y  R  V F ++R  + I DY+ AIRL  NYADAYYN GLA       +QAL D R A+
Sbjct:  282 PILAGAYNNRGNVQFALNRTREGIGDYNQAIRLNSNYADAYYNLGLA-------QQALDDRRAAI 339
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BLAST of mRNA_P-wetherbeei_contig20264.2.1 vs. uniprot
Match: UPI0007848D1B (tetratricopeptide repeat protein n=1 Tax=Treponema endosymbiont of Eucomonympha sp. TaxID=1580831 RepID=UPI0007848D1B)

HSP 1 Score: 50.1 bits (118), Expect = 9.650e-5
Identity = 21/60 (35.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   61 HFYMDRYDDAITDYDLAIRLRRNYADAYYNRGLAFDGKGLLKQALGDLRKALTCNAFAIP 240
            +FY + Y++AI +YD AI+  +NYAD ++N+G+A+      K+    L+KA++ +++ +P
Sbjct:   49 YFYSNDYENAIANYDKAIKQDQNYADVHFNQGIAYQQSSDDKRCFLKLKKAVSLDSYFVP 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20264.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001998623D4.550e-6793.58Tetratricopeptide repeat protein n=1 Tax=Verrucomi... [more]
UPI0019BC129B2.130e-641.27Tetratricopeptide repeat protein n=1 Tax=Rhizobact... [more]
A0A3A4VLU7_9BACT1.130e-532.71Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A6J4KGR6_9CYAN9.190e-547.69TPR domain protein, putative component of TonB sys... [more]
UPI0007848D1B9.650e-535.00tetratricopeptide repeat protein n=1 Tax=Treponema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20264contigP-wetherbeei_contig20264:753..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog575615.HMPREF0670_00963
PFAMsTPR_1,TPR_11,TPR_16,TPR_17,TPR_2,TPR_6,TPR_8
Model size327
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.12e-07
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,4NGGZ@976|Bacteroidetes,2FMHN@200643|Bacteroidia
Descriptiontetratricopeptide repeat
Cds size327
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.039793-CDS-P-wetherbeei_contig20264:752..10791683186195.039793-CDS-P-wetherbeei_contig20264:752..1079Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20264 753..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20264.2.1prot_P-wetherbeei_contig20264.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20264 753..1079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20264.2.1

>prot_P-wetherbeei_contig20264.2.1 ID=prot_P-wetherbeei_contig20264.2.1|Name=mRNA_P-wetherbeei_contig20264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MSAEILNPKMAVFYYYRATVHFYMDRYDDAITDYDLAIRLRRNYADAYYN
RGLAFDGKGLLKQALGDLRKALTCNAFAIPASKWTNEARAKVIEIEAKLF
ETENLQAQT
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mRNA from alignment at P-wetherbeei_contig20264:753..1079-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20264.2.1 ID=mRNA_P-wetherbeei_contig20264.2.1|Name=mRNA_P-wetherbeei_contig20264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20264:753..1079- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGCCGAAATCCTGAACCCGAAGATGGCGGTGTTCTATTATTACCG
CGCCACCGTTCATTTTTATATGGACAGATATGACGACGCCATCACCGACT
ATGACCTGGCAATCAGGCTGCGGCGGAACTACGCCGACGCCTATTACAAC
CGCGGGCTCGCCTTTGACGGCAAGGGGCTTTTGAAACAGGCGCTGGGCGA
TCTCCGCAAGGCGCTGACATGCAATGCCTTTGCGATTCCGGCCAGCAAAT
GGACGAACGAAGCACGCGCCAAAGTCATCGAGATCGAGGCGAAGCTCTTC
GAAACCGAAAATCTTCAGGCCCAGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20264:753..1079-

>mRNA_P-wetherbeei_contig20264.2.1 ID=mRNA_P-wetherbeei_contig20264.2.1|Name=mRNA_P-wetherbeei_contig20264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20264:753..1079- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGCCGAAATCCTGAACCCGAAGATGGCGGTGTTCTATTATTACCG
CGCCACCGTTCATTTTTATATGGACAGATATGACGACGCCATCACCGACT
ATGACCTGGCAATCAGGCTGCGGCGGAACTACGCCGACGCCTATTACAAC
CGCGGGCTCGCCTTTGACGGCAAGGGGCTTTTGAAACAGGCGCTGGGCGA
TCTCCGCAAGGCGCTGACATGCAATGCCTTTGCGATTCCGGCCAGCAAAT
GGACGAACGAAGCACGCGCCAAAGTCATCGAGATCGAGGCGAAGCTCTTC
GAAACCGAAAATCTTCAGGCCCAGACA
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